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Title: Microfluidic approaches to synchrotron radiation-based Fourier transform infrared (SR-FTIR) spectral microscopy of living biosystems

Abstract

A long-standing desire in biological and biomedical sciences is to be able to probe cellular chemistry as biological processes are happening inside living cells. Synchrotron radiation-based Fourier transform infrared (SR-FTIR) spectral microscopy is a label-free and nondestructive analytical technique that can provide spatiotemporal distributions and relative abundances of biomolecules of a specimen by their characteristic vibrational modes. Despite great progress in recent years, SR-FTIR imaging of living biological systems remains challenging because of the demanding requirements on environmental control and strong infrared absorption of water. To meet this challenge, microfluidic devices have emerged as a method to control the water thickness while providing a hospitable environment to measure cellular processes and responses over many hours or days. This paper will provide an overview of microfluidic device development for SR-FTIR imaging of living biological systems, provide contrast between the various techniques including closed and open-channel designs, and discuss future directions of development within this area. Even as the fundamental science and technological demonstrations develop, other ongoing issues must be addressed; for example, choosing applications whose experimental requirements closely match device capabilities, and developing strategies to efficiently complete the cycle of development. These will require imagination, ingenuity and collaboration.

Authors:
 [1];  [2];  [1];  [1]
  1. Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States). Berkeley Synchrotron Infrared Structural Biology (BSISB) Program
  2. Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States). Berkeley Synchrotron Infrared Structural Biology (BSISB) Program; Elettra Synchrotron Light Lab., Trieste (Italy)
Publication Date:
Research Org.:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Basic Energy Sciences (BES); USDOE Office of Science (SC), Biological and Environmental Research (BER)
OSTI Identifier:
1393593
Grant/Contract Number:  
AC02-05CH11231
Resource Type:
Accepted Manuscript
Journal Name:
Protein and Peptide Letters
Additional Journal Information:
Journal Volume: 23; Journal Issue: 3; Journal ID: ISSN 0929-8665
Publisher:
Bentham Science Publishers
Country of Publication:
United States
Language:
English
Subject:
46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND TECHNOLOGY

Citation Formats

Loutherback, Kevin, Birarda, Giovanni, Chen, Liang, and N. Holman, Hoi-Ying. Microfluidic approaches to synchrotron radiation-based Fourier transform infrared (SR-FTIR) spectral microscopy of living biosystems. United States: N. p., 2016. Web. doi:10.2174/0929866523666160106154035.
Loutherback, Kevin, Birarda, Giovanni, Chen, Liang, & N. Holman, Hoi-Ying. Microfluidic approaches to synchrotron radiation-based Fourier transform infrared (SR-FTIR) spectral microscopy of living biosystems. United States. https://doi.org/10.2174/0929866523666160106154035
Loutherback, Kevin, Birarda, Giovanni, Chen, Liang, and N. Holman, Hoi-Ying. Mon . "Microfluidic approaches to synchrotron radiation-based Fourier transform infrared (SR-FTIR) spectral microscopy of living biosystems". United States. https://doi.org/10.2174/0929866523666160106154035. https://www.osti.gov/servlets/purl/1393593.
@article{osti_1393593,
title = {Microfluidic approaches to synchrotron radiation-based Fourier transform infrared (SR-FTIR) spectral microscopy of living biosystems},
author = {Loutherback, Kevin and Birarda, Giovanni and Chen, Liang and N. Holman, Hoi-Ying},
abstractNote = {A long-standing desire in biological and biomedical sciences is to be able to probe cellular chemistry as biological processes are happening inside living cells. Synchrotron radiation-based Fourier transform infrared (SR-FTIR) spectral microscopy is a label-free and nondestructive analytical technique that can provide spatiotemporal distributions and relative abundances of biomolecules of a specimen by their characteristic vibrational modes. Despite great progress in recent years, SR-FTIR imaging of living biological systems remains challenging because of the demanding requirements on environmental control and strong infrared absorption of water. To meet this challenge, microfluidic devices have emerged as a method to control the water thickness while providing a hospitable environment to measure cellular processes and responses over many hours or days. This paper will provide an overview of microfluidic device development for SR-FTIR imaging of living biological systems, provide contrast between the various techniques including closed and open-channel designs, and discuss future directions of development within this area. Even as the fundamental science and technological demonstrations develop, other ongoing issues must be addressed; for example, choosing applications whose experimental requirements closely match device capabilities, and developing strategies to efficiently complete the cycle of development. These will require imagination, ingenuity and collaboration.},
doi = {10.2174/0929866523666160106154035},
journal = {Protein and Peptide Letters},
number = 3,
volume = 23,
place = {United States},
year = {Mon Feb 15 00:00:00 EST 2016},
month = {Mon Feb 15 00:00:00 EST 2016}
}

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Works referenced in this record:

Enhancing high-throughput technology and microfluidics with FTIR spectroscopic imaging
journal, March 2007


Monitoring and manipulation of the pH of single cells using infrared spectromicroscopy and a molecular switch
journal, April 2013

  • Carbone, Marilena; Zlateva, Theodora; Quaroni, Luca
  • Biochimica et Biophysica Acta (BBA) - General Subjects, Vol. 1830, Issue 4
  • DOI: 10.1016/j.bbagen.2012.12.022

Applications of ATR-FTIR spectroscopic imaging to biomedical samples
journal, July 2006


FT-IR imaging of native and tissue-engineered bone and cartilage
journal, May 2007


Synchrotron based infrared imaging and spectroscopy via focal plane array on live fibroblasts in D2O enriched medium
journal, May 2014


Droplet-Based Microfluidic Platforms for the Encapsulation and Screening of Mammalian Cells and Multicellular Organisms
journal, August 2008


Fabrication of a microfluidic platform for investigating dynamic biochemical processes in living samples by FTIR microspectroscopy
journal, May 2010

  • Birarda, Giovanni; Grenci, Gianluca; Businaro, Luca
  • Microelectronic Engineering, Vol. 87, Issue 5-8
  • DOI: 10.1016/j.mee.2009.11.081

Single-Cell Enzyme Concentrations, Kinetics, and Inhibition Analysis Using High-Density Hydrodynamic Cell Isolation Arrays
journal, May 2006

  • Di Carlo, Dino; Aghdam, Nima; Lee, Luke P.
  • Analytical Chemistry, Vol. 78, Issue 14
  • DOI: 10.1021/ac060541s

Open-Channel Microfluidic Membrane Device for Long-Term FT-IR Spectromicroscopy of Live Adherent Cells
journal, April 2015


Live-Fibroblast IR Imaging of a Cytoprotective PhotoCORM Activated with Visible Light
journal, August 2013

  • Zobi, Fabio; Quaroni, Luca; Santoro, Giuseppe
  • Journal of Medicinal Chemistry, Vol. 56, Issue 17
  • DOI: 10.1021/jm400527k

Imaging individual mRNA molecules using multiple singly labeled probes
journal, September 2008

  • Raj, Arjun; van den Bogaard, Patrick; Rifkin, Scott A.
  • Nature Methods, Vol. 5, Issue 10
  • DOI: 10.1038/nmeth.1253

Single-cell genomics
journal, March 2011


Differentiation of individual human mesenchymal stem cells probed by FTIR microscopic imaging
journal, January 2007

  • Krafft, Christoph; Salzer, Reiner; Seitz, Sebastian
  • The Analyst, Vol. 132, Issue 7
  • DOI: 10.1039/b700368d

Spectroscopic signatures of single, isolated cancer cell nuclei using synchrotron infrared microscopy
journal, January 2009

  • Pijanka, Jacek Klaudiusz; Kohler, Achim; Yang, Ying
  • The Analyst, Vol. 134, Issue 6
  • DOI: 10.1039/b821112d

Measurement of metabolite formation in single living cells of Chlamydomonas reinhardtii using synchrotron Fourier-Transform Infrared spectromicroscopy
journal, January 2009

  • Goff, Kira L.; Quaroni, Luca; Wilson, Kenneth E.
  • The Analyst, Vol. 134, Issue 11
  • DOI: 10.1039/b915810c

Infrared microspectroscopy of live cells in aqueous media
journal, January 2010

  • (Swain) Marcsisin, Ellen J.; Uttero, Christina M.; Miljković, Miloš
  • The Analyst, Vol. 135, Issue 12
  • DOI: 10.1039/c0an00548g

Infrared spectromicroscopy of biochemistry in functional single cells
journal, January 2011

  • Quaroni, Luca; Zlateva, Theodora
  • The Analyst, Vol. 136, Issue 16
  • DOI: 10.1039/c1an15060j

Electric field standing wave artefacts in FTIR micro-spectroscopy of biological materials
journal, January 2012

  • Filik, Jacob; Frogley, Mark D.; Pijanka, Jacek K.
  • The Analyst, Vol. 137, Issue 4
  • DOI: 10.1039/c2an15995c

Determination of cell cycle phases in live B16 melanoma cells using IRMS
journal, January 2013

  • Bedolla, Diana E.; Kenig, Saša; Mitri, Elisa
  • The Analyst, Vol. 138, Issue 14
  • DOI: 10.1039/c3an00318c

Apoptotic pathways of U937 leukemic monocytes investigated by infrared microspectroscopy and flow cytometry
journal, January 2014

  • Birarda, Giovanni; Bedolla, Diana E.; Mitri, Elisa
  • The Analyst, Vol. 139, Issue 12
  • DOI: 10.1039/c4an00317a

A novel single-cell screening platform reveals proteome plasticity during yeast stress responses
journal, March 2013

  • Breker, Michal; Gymrek, Melissa; Schuldiner, Maya
  • Journal of Cell Biology, Vol. 200, Issue 6
  • DOI: 10.1083/jcb.201301120

Microfluidics: Fluid physics at the nanoliter scale
journal, October 2005


Infrared Spectra of Tissues
journal, August 1949


Single Cell Synchrotron FT-IR Microspectroscopy Reveals a Link between Neutral Lipid and Storage Carbohydrate Fluxes in S. cerevisiae
journal, September 2013


Infrared Spectroscopy with Multivariate Analysis Potentially Facilitates the Segregation of Different Types of Prostate Cell
journal, May 2006


Works referencing / citing this record:

Estimating and correcting interference fringes in infrared spectra in infrared hyperspectral imaging
journal, January 2018

  • Azarfar, Ghazal; Aboualizadeh, Ebrahim; Walter, Nicholas M.
  • The Analyst, Vol. 143, Issue 19
  • DOI: 10.1039/c8an00093j

Synchrotron infrared nanospectroscopy on a graphene chip
journal, January 2019

  • Meireles, Leonel M.; Barcelos, Ingrid D.; Ferrari, Gustavo A.
  • Lab on a Chip, Vol. 19, Issue 21
  • DOI: 10.1039/c9lc00686a

Vibrational Spectroscopy for Imaging Single Microbial Cells in Complex Biological Samples
journal, April 2017


Estimating and correcting interference fringes in infrared spectra in infrared hyperspectral imaging
text, January 2018


Vibrational Spectroscopy for Imaging Single Microbial Cells in Complex Biological Samples
journal, April 2017