Bacterial Biogeography across the Amazon River-Ocean Continuum
Abstract
Spatial and temporal patterns in microbial biodiversity across the Amazon river-ocean continuum were investigated along ~675 km of the lower Amazon River mainstem, in the Tapajos River tributary, and in the plume and coastal ocean during low and high river discharge using amplicon sequencing of 16S rRNA genes in whole water and size-fractionated samples (0.2-2.0 μm and >2.0 μm). River communities varied among tributaries, but mainstem communities were spatially homogeneous and tracked seasonal changes in river discharge and co-varying factors. Co-occurrence network analysis identified strongly interconnected river assemblages during high (May) and low (December) discharge periods, and weakly interconnected transitional assemblages in September, suggesting that this system supports two seasonal microbial communities linked to river discharge. In contrast, plume communities showed little seasonal differences and instead varied spatially tracking salinity. However, salinity explained only a small fraction of community variability, and plume communities in blooms of diatom-diazotroph assemblages were strikingly different than those in other high salinity plume samples. This suggests that while salinity physically structures plumes through buoyancy and mixing, the composition of plume-specific communities is controlled by other factors including nutrients, phytoplankton community composition, and dissolved organic matter chemistry. Co-occurrence networks identified interconnected assemblages associated with the highlymore »
- Authors:
-
- University of Maryland Center for Environmental Science, Cambridge, MD (United States). Horn Point Laboratory
- Univ. of Georgia, Athens, GA (United States). Department of Marine Sciences
- Marine Biological Laboratory, Woods Hole, MA (United States). Josephine Bay Paul Center
- University of São Paulo, Piracicaba (Brazil). Center of Nuclear Energy in Agriculture
- Oregon State Univ., Corvallis, OR (United States). College of Earth, Ocean, and Atmospheric Sciences
- Univ. of Washington, Seattle, WA (United States). School of Oceanography
- Massachusetts Inst. of Technology (MIT), Cambridge, MA (United States)
- Pacific Northwest National Lab. (PNNL), Richland, WA (United States). Marine Sciences Laboratory
- Publication Date:
- Research Org.:
- Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)
- Sponsoring Org.:
- USDOE
- OSTI Identifier:
- 1371969
- Report Number(s):
- PNNL-SA-125962
Journal ID: ISSN 1664-302X
- Grant/Contract Number:
- AC05-76RL01830
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Frontiers in Microbiology
- Additional Journal Information:
- Journal Volume: 8; Journal ID: ISSN 1664-302X
- Publisher:
- Frontiers Research Foundation
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 58 GEOSCIENCES; 59 BASIC BIOLOGICAL SCIENCES; 60 APPLIED LIFE SCIENCES; Amazon; aquatic; marine; continuum; terrestrial; interface; ecosystem; microbial; bacteria; genomic; metagenome; river; coastal; estuarine; carbon; sequence; biology
Citation Formats
Doherty, Mary, Yager, Patricia L., Moran, Mary Ann, Coles, Victoria J., Fortunato, Caroline S., Krusche, Alex V., Medeiros, Patricia M., Payet, Jerome P., Richey, Jeffrey E., Satinsky, Brandon M., Sawakuchi, Henrique O., Ward, Nicholas D., and Crump, Byron C. Bacterial Biogeography across the Amazon River-Ocean Continuum. United States: N. p., 2017.
Web. doi:10.3389/fmicb.2017.00882.
Doherty, Mary, Yager, Patricia L., Moran, Mary Ann, Coles, Victoria J., Fortunato, Caroline S., Krusche, Alex V., Medeiros, Patricia M., Payet, Jerome P., Richey, Jeffrey E., Satinsky, Brandon M., Sawakuchi, Henrique O., Ward, Nicholas D., & Crump, Byron C. Bacterial Biogeography across the Amazon River-Ocean Continuum. United States. https://doi.org/10.3389/fmicb.2017.00882
Doherty, Mary, Yager, Patricia L., Moran, Mary Ann, Coles, Victoria J., Fortunato, Caroline S., Krusche, Alex V., Medeiros, Patricia M., Payet, Jerome P., Richey, Jeffrey E., Satinsky, Brandon M., Sawakuchi, Henrique O., Ward, Nicholas D., and Crump, Byron C. Tue .
"Bacterial Biogeography across the Amazon River-Ocean Continuum". United States. https://doi.org/10.3389/fmicb.2017.00882. https://www.osti.gov/servlets/purl/1371969.
@article{osti_1371969,
title = {Bacterial Biogeography across the Amazon River-Ocean Continuum},
author = {Doherty, Mary and Yager, Patricia L. and Moran, Mary Ann and Coles, Victoria J. and Fortunato, Caroline S. and Krusche, Alex V. and Medeiros, Patricia M. and Payet, Jerome P. and Richey, Jeffrey E. and Satinsky, Brandon M. and Sawakuchi, Henrique O. and Ward, Nicholas D. and Crump, Byron C.},
abstractNote = {Spatial and temporal patterns in microbial biodiversity across the Amazon river-ocean continuum were investigated along ~675 km of the lower Amazon River mainstem, in the Tapajos River tributary, and in the plume and coastal ocean during low and high river discharge using amplicon sequencing of 16S rRNA genes in whole water and size-fractionated samples (0.2-2.0 μm and >2.0 μm). River communities varied among tributaries, but mainstem communities were spatially homogeneous and tracked seasonal changes in river discharge and co-varying factors. Co-occurrence network analysis identified strongly interconnected river assemblages during high (May) and low (December) discharge periods, and weakly interconnected transitional assemblages in September, suggesting that this system supports two seasonal microbial communities linked to river discharge. In contrast, plume communities showed little seasonal differences and instead varied spatially tracking salinity. However, salinity explained only a small fraction of community variability, and plume communities in blooms of diatom-diazotroph assemblages were strikingly different than those in other high salinity plume samples. This suggests that while salinity physically structures plumes through buoyancy and mixing, the composition of plume-specific communities is controlled by other factors including nutrients, phytoplankton community composition, and dissolved organic matter chemistry. Co-occurrence networks identified interconnected assemblages associated with the highly productive low salinity nearshore region, diatom-diazotroph blooms, and the plume edge region, and weakly interconnected assemblages in high salinity regions. This suggests that the plume supports a transitional community influenced by immigration of ocean bacteria from the plume edge, and by species sorting as these communities adapt to local environmental conditions. Few studies have explored patterns of microbial diversity in tropical rivers and coastal oceans. Comparison of Amazon continuum microbial communities to those from temperate and arctic systems suggest that river discharge and salinity are master variables structuring a range of environmental conditions that control bacterial communities across the river-ocean continuum.},
doi = {10.3389/fmicb.2017.00882},
journal = {Frontiers in Microbiology},
number = ,
volume = 8,
place = {United States},
year = {Tue May 23 00:00:00 EDT 2017},
month = {Tue May 23 00:00:00 EDT 2017}
}
Free Publicly Available Full Text
Publisher's Version of Record
Other availability
Search WorldCat to find libraries that may hold this journal
Cited by: 56 works
Citation information provided by
Web of Science
Web of Science
Save to My Library
You must Sign In or Create an Account in order to save documents to your library.
Works referenced in this record:
Spatial variability of particle-attached and free-living bacterial diversity in surface waters from the Mackenzie River to the Beaufort Sea (Canadian Arctic)
journal, January 2013
- Ortega-Retuerta, E.; Joux, F.; Jeffrey, W. H.
- Biogeosciences, Vol. 10, Issue 4
Seasonal and spatial variability of dissolved organic matter composition in the lower Amazon River
journal, November 2016
- Seidel, Michael; Dittmar, Thorsten; Ward, Nicholas D.
- Biogeochemistry, Vol. 131, Issue 3
Bacterial assemblage structure and carbon metabolism along a productivity gradient in the NE Atlantic Ocean
journal, January 2007
- Alonso-Sáez, L.; Arístegui, J.; Pinhassi, J.
- Aquatic Microbial Ecology, Vol. 46
Influence of Salinity on Bacterioplankton Communities from the Brazilian Rain Forest to the Coastal Atlantic Ocean
journal, March 2011
- Silveira, Cynthia B.; Vieira, Ricardo P.; Cardoso, Alexander M.
- PLoS ONE, Vol. 6, Issue 3
Microbial Gene Abundance and Expression Patterns across a River to Ocean Salinity Gradient
journal, November 2015
- Fortunato, Caroline S.; Crump, Byron C.
- PLOS ONE, Vol. 10, Issue 11
CoNet app: inference of biological association networks using Cytoscape
journal, January 2016
- Faust, Karoline; Raes, Jeroen
- F1000Research, Vol. 5
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
journal, August 2013
- Langille, Morgan G. I.; Zaneveld, Jesse; Caporaso, J. Gregory
- Nature Biotechnology, Vol. 31, Issue 9
Outgassing from Amazonian rivers and wetlands as a large tropical source of atmospheric CO2
journal, April 2002
- Richey, Jeffrey E.; Melack, John M.; Aufdenkampe, Anthony K.
- Nature, Vol. 416, Issue 6881
Biogeochemistry of carbon in the Amazon River
journal, March 1990
- Richey, Jeffrey E.; Hedges, John I.; Devol, Allan H.
- Limnology and Oceanography, Vol. 35, Issue 2
Nitrogen sources and net growth efficiency of zooplankton in three Amazon River plume food webs: Zooplankton net growth efficiency in the Amazon plume
journal, November 2015
- Loick-Wilde, Natalie; Weber, Sarah C.; Conroy, Brandon J.
- Limnology and Oceanography, Vol. 61, Issue 2
The Amazon continuum dataset: quantitative metagenomic and metatranscriptomic inventories of the Amazon River plume, June 2010
journal, January 2014
- Satinsky, Brandon M.; Zielinski, Brian L.; Doherty, Mary
- Microbiome, Vol. 2, Issue 1
Metagenomics of the Water Column in the Pristine Upper Course of the Amazon River
journal, August 2011
- Ghai, Rohit; Rodŕíguez-Valera, Francisco; McMahon, Katherine D.
- PLoS ONE, Vol. 6, Issue 8
Pyrosequencing reveals contrasting seasonal dynamics of taxa within Baltic Sea bacterioplankton communities
journal, October 2009
- Andersson, Anders F.; Riemann, Lasse; Bertilsson, Stefan
- The ISME Journal, Vol. 4, Issue 2
Microbial Biogeography along an Estuarine Salinity Gradient: Combined Influences of Bacterial Growth and Residence Time
journal, March 2004
- Crump, B. C.; Hopkinson, C. S.; Sogin, M. L.
- Applied and Environmental Microbiology, Vol. 70, Issue 3
Bacterioplankton Community Composition in Flowing Waters of the Ipswich River Watershed
journal, October 2002
- Levine, Uri Y.; Crump, Byron C.
- The Biological Bulletin, Vol. 203, Issue 2
A Guide to the Natural History of Freshwater Lake Bacteria
journal, March 2011
- Newton, R. J.; Jones, S. E.; Eiler, A.
- Microbiology and Molecular Biology Reviews, Vol. 75, Issue 1
Complete genome sequence of Coraliomargarita akajimensis type strain (04OKA010-24T)
journal, June 2010
- Mavromatis, Konstantinos; Abt, Birte; Brambilla, Evelyne
- Standards in Genomic Sciences, Vol. 2, Issue 3
Stability of Bacterial Composition and Activity in Different Salinity Waters in the Dynamic Patos Lagoon Estuary: Evidence from a Lagrangian-Like Approach
journal, June 2013
- They, Ng Haig; Ferreira, Lise Maria Holanda; Marins, Luís Fernando
- Microbial Ecology, Vol. 66, Issue 3
Terrestrial origin of bacterial communities in complex boreal freshwater networks
journal, August 2015
- Ruiz-González, Clara; Niño-García, Juan Pablo; del Giorgio, Paul A.
- Ecology Letters, Vol. 18, Issue 11
Comparison of free-living, suspended particle, and aggregate-associated Bacterial and Archaeal communities in the Laptev Sea
journal, September 2009
- Kellogg, Cte; Deming, Jw
- Aquatic Microbial Ecology, Vol. 57
Microbial Co-occurrence Relationships in the Human Microbiome
journal, July 2012
- Faust, Karoline; Sathirapongsasuti, J. Fah; Izard, Jacques
- PLoS Computational Biology, Vol. 8, Issue 7
Extensive bloom of a N2-fixing diatom/cyanobacterial association in the tropical Atlantic Ocean
journal, January 1999
- Carpenter, Ej; Montoya, Jp; Burns, J.
- Marine Ecology Progress Series, Vol. 185
Estimating cell-to-cell land surface drainage paths from digital channel networks, with an application to the Amazon basin
journal, December 2005
- Mayorga, Emilio; Logsdon, Miles G.; Ballester, Maria Victoria R.
- Journal of Hydrology, Vol. 315, Issue 1-4
Spatiotemporal Variability in Dissolved Organic Matter Composition is More Strongly Related to Bacterioplankton Community Composition than to Metabolic Capability in a Blackwater Estuarine System
journal, June 2013
- Wear, Emma K.; Koepfler, Eric T.; Smith, Erik M.
- Estuaries and Coasts, Vol. 37, Issue 1
Circumpolar synchrony in big river bacterioplankton
journal, November 2009
- Crump, Byron C.; Peterson, Bruce J.; Raymond, Peter A.
- Proceedings of the National Academy of Sciences, Vol. 106, Issue 50
Removing Noise From Pyrosequenced Amplicons
journal, January 2011
- Quince, Christopher; Lanzen, Anders; Davenport, Russell J.
- BMC Bioinformatics, Vol. 12, Issue 1
Bacterial diversity along a 2600 km river continuum: River bacterioplankton diversity
journal, June 2015
- Savio, Domenico; Sinclair, Lucas; Ijaz, Umer Z.
- Environmental Microbiology, Vol. 17, Issue 12
Non-parametric multivariate analyses of changes in community structure
journal, March 1993
- Clarke, K. R.
- Austral Ecology, Vol. 18, Issue 1
Seasonality and vertical structure of microbial communities in an ocean gyre
journal, June 2009
- Treusch, Alexander H.; Vergin, Kevin L.; Finlay, Liam A.
- The ISME Journal, Vol. 3, Issue 10
Description of Freshwater Bacterial Assemblages from the Upper Paraná River Floodpulse System, Brazil
journal, June 2008
- Lemke, Michael J.; Lienau, E. Kurt; Rothe, Jean
- Microbial Ecology, Vol. 57, Issue 1
Prokaryotic Genomes and Diversity in Surface Ocean Waters: Interrogating the Global Ocean Sampling Metagenome
journal, February 2009
- Biers, E. J.; Sun, S.; Howard, E. C.
- Applied and Environmental Microbiology, Vol. 75, Issue 7
Combined phylogenetic and genomic approaches for the high-throughput study of microbial habitat adaptation
journal, October 2011
- Zaneveld, Jesse R. R.; Parfrey, Laura Wegener; Van Treuren, Will
- Trends in Microbiology, Vol. 19, Issue 10
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
journal, November 2007
- Pruesse, E.; Quast, C.; Knittel, K.
- Nucleic Acids Research, Vol. 35, Issue 21
Fate of the Amazon River dissolved organic matter in the tropical Atlantic Ocean: DOM IN THE AMAZON RIVER-OCEAN CONTINUUM
journal, May 2015
- Medeiros, Patricia M.; Seidel, Michael; Ward, Nicholas D.
- Global Biogeochemical Cycles, Vol. 29, Issue 5
Analysis of Composition and Structure of Coastal to Mesopelagic Bacterioplankton Communities in the Northern Gulf of Mexico
journal, January 2013
- King, Gary M.; Smith, Conor B.; Tolar, Bradley
- Frontiers in Microbiology, Vol. 3
Catchment-scale biogeography of riverine bacterioplankton
journal, September 2014
- Read, Daniel S.; Gweon, Hyun S.; Bowes, Michael J.
- The ISME Journal, Vol. 9, Issue 2
Metagenomic and metatranscriptomic inventories of the lower Amazon River, May 2011
journal, September 2015
- Satinsky, Brandon M.; Fortunato, Caroline S.; Doherty, Mary
- Microbiome, Vol. 3, Issue 1
Canonical Correspondence Analysis: A New Eigenvector Technique for Multivariate Direct Gradient Analysis
journal, October 1986
- ter Braak, Cajo J. F.
- Ecology, Vol. 67, Issue 5
Infrequent marine–freshwater transitions in the microbial world
journal, September 2009
- Logares, Ramiro; Bråte, Jon; Bertilsson, Stefan
- Trends in Microbiology, Vol. 17, Issue 9
Influence of the Amazon River discharge on the biogeography of phytoplankton communities in the western tropical north Atlantic
journal, January 2014
- Goes, Joaquim I.; Gomes, Helga do Rosario; Chekalyuk, Alexander M.
- Progress in Oceanography, Vol. 120
Core functional traits of bacterial communities in the Upper Mississippi River show limited variation in response to land cover
journal, August 2014
- Staley, Christopher; Gould, Trevor J.; Wang, Ping
- Frontiers in Microbiology, Vol. 5
Mississippi River Plume Enriches Microbial Diversity in the Northern Gulf of Mexico
journal, July 2016
- Mason, Olivia U.; Canter, Erin J.; Gillies, Lauren E.
- Frontiers in Microbiology, Vol. 7
Implications of streamlining theory for microbial ecology
journal, April 2014
- Giovannoni, Stephen J.; Cameron Thrash, J.; Temperton, Ben
- The ISME Journal, Vol. 8, Issue 8
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
journal, October 2009
- Schloss, P. D.; Westcott, S. L.; Ryabin, T.
- Applied and Environmental Microbiology, Vol. 75, Issue 23, p. 7537-7541
Community Dynamics of Free-living and Particle-associated Bacterial Assemblages during a Freshwater Phytoplankton Bloom
journal, October 2001
- Riemann, L.; Winding, A.
- Microbial Ecology, Vol. 42, Issue 3
QIIME allows analysis of high-throughput community sequencing data
journal, April 2010
- Caporaso, J. Gregory; Kuczynski, Justin; Stombaugh, Jesse
- Nature Methods, Vol. 7, Issue 5
The River Continuum Concept
journal, January 1980
- Vannote, Robin L.; Minshall, G. Wayne; Cummins, Kenneth W.
- Canadian Journal of Fisheries and Aquatic Sciences, Vol. 37, Issue 1
The pathways and properties of the Amazon River Plume in the tropical North Atlantic Ocean: AMAZON RIVER PLUME
journal, December 2013
- Coles, Victoria J.; Brooks, Maureen T.; Hopkins, Julia
- Journal of Geophysical Research: Oceans, Vol. 118, Issue 12
Bacterioplankton Community Shifts in an Arctic Lake Correlate with Seasonal Changes in Organic Matter Source
journal, April 2003
- Crump, B. C.; Kling, G. W.; Bahr, M.
- Applied and Environmental Microbiology, Vol. 69, Issue 4
Pelagicoccus croceus sp. nov., a novel marine member of the family Puniceicoccaceae within the phylum 'Verrucomicrobia' isolated from seagrass
journal, December 2007
- Yoon, J.; Oku, N.; Matsuda, S.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 57, Issue 12
Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex
journal, February 2008
- Hamady, Micah; Walker, Jeffrey J.; Harris, J. Kirk
- Nature Methods, Vol. 5, Issue 3, p. 235-237
The Simes Method for Multiple Hypothesis Testing with Positively Dependent Test Statistics
journal, December 1997
- Sarkar, Sanat K.; Chang, Chung-Kuei
- Journal of the American Statistical Association, Vol. 92, Issue 440
Macroecological patterns of marine bacteria on a global scale
journal, November 2012
- Amend, Anthony S.; Oliver, Tom A.; Amaral-Zettler, Linda A.
- Journal of Biogeography, Vol. 40, Issue 4
A method of linking multivariate community structure to environmental variables
journal, January 1993
- Clarke, Kr; Ainsworth, M.
- Marine Ecology Progress Series, Vol. 92
Natural Assemblages of Marine Proteobacteria and Members of the Cytophaga-Flavobacter Cluster Consuming Low- and High-Molecular-Weight Dissolved Organic Matter
journal, April 2000
- Cottrell, M. T.; Kirchman, D. L.
- Applied and Environmental Microbiology, Vol. 66, Issue 4
Phylogenetic diversity of aggregate-attached vs. free-living marine bacterial assemblages
journal, July 1993
- DeLong, Edward F.; Franks, Diana G.; Alldredge, Alice L.
- Limnology and Oceanography, Vol. 38, Issue 5
Differences in organic matter and bacterioplankton between sections of the largest Arctic river: Mosaic or continuum?: Differences in POM in the Yenisei River
journal, May 2015
- Gladyshev, Michail I.; Kolmakova, Olesia V.; Tolomeev, Alexander P.
- Limnology and Oceanography, Vol. 60, Issue 4
Factors controlling water-column respiration in rivers of the central and southwestern Amazon Basin
journal, March 2012
- Ellis, Erin E.; Richey, Jeffrey E.; Aufdenkampe, Anthony K.
- Limnology and Oceanography, Vol. 57, Issue 2
Organic matter diagenesis and bacterial contributions to detrital carbon and nitrogen in the Amazon River system
journal, May 2009
- Tremblay, Luc; Benner, Ronald
- Limnology and Oceanography, Vol. 54, Issue 3
Global patterns in bacterial diversity
journal, June 2007
- Lozupone, C. A.; Knight, R.
- Proceedings of the National Academy of Sciences, Vol. 104, Issue 27
Annual Patterns in Bacterioplankton Community Variability in a Humic Lake
journal, October 2004
- Kent, A. D.; Jones, S. E.; Yannarell, A. C.
- Microbial Ecology, Vol. 48, Issue 4
Influence of Amazon and Orinoco offshore surface water plumes on oligotrophic bacterioplankton diversity in the west tropical Atlantic
journal, May 2006
- Hewson, I.; Capone, Dg; Steele, Ja
- Aquatic Microbial Ecology, Vol. 43
Master recyclers: features and functions of bacteria associated with phytoplankton blooms
journal, August 2014
- Buchan, Alison; LeCleir, Gary R.; Gulvik, Christopher A.
- Nature Reviews Microbiology, Vol. 12, Issue 10
Biogeography of bacterioplankton in the tropical seawaters of Singapore
journal, January 2013
- Lau, Stanley C. K.; Zhang, Rui; Brodie, Eoin L.
- FEMS Microbiology Ecology, Vol. 84, Issue 2
Bacterial activity and genetic richness along an estuarine gradient (Rhone River plume, France)
journal, January 2002
- Troussellier, M.; Schäfer, H.; Batailler, N.
- Aquatic Microbial Ecology, Vol. 28
Diversity and dynamics of free-living and particle-associated Betaproteobacteria and Actinobacteria in relation to phytoplankton and zooplankton communities
journal, June 2011
- Parveen, Bushra; Reveilliez, Jean-Philippe; Mary, Isabelle
- FEMS Microbiology Ecology, Vol. 77, Issue 3
Bacterial carbon metabolism in the Amazon River system
journal, November 1995
- Benner, Ronald; Opsahl, Stephen; Chin-Leo, Gerardo
- Limnology and Oceanography, Vol. 40, Issue 7
Bacterioplankton Community Variation Across River to Ocean Environmental Gradients
journal, February 2011
- Fortunato, Caroline S.; Crump, Byron C.
- Microbial Ecology, Vol. 62, Issue 2
Spatial variability overwhelms seasonal patterns in bacterioplankton communities across a river to ocean gradient
journal, October 2011
- Fortunato, Caroline S.; Herfort, Lydie; Zuber, Peter
- The ISME Journal, Vol. 6, Issue 3
Species Assemblages and Indicator Species: The Need for a Flexible Asymmetrical Approach
journal, August 1997
- Dufrene, Marc; Legendre, Pierre
- Ecological Monographs, Vol. 67, Issue 3
Degradation of terrestrially derived macromolecules in the Amazon River
journal, May 2013
- Ward, Nicholas D.; Keil, Richard G.; Medeiros, Patricia M.
- Nature Geoscience, Vol. 6, Issue 7
Bacterioplankton community in Chesapeake Bay: Predictable or random assemblages
journal, September 2006
- Kan, Jinjun; Crump, Byron C.; Wang, Kui
- Limnology and Oceanography, Vol. 51, Issue 5
Effects of large river dam regulation on bacterioplankton community structure
journal, January 2013
- Ruiz-González, Clara; Proia, Lorenzo; Ferrera, Isabel
- FEMS Microbiology Ecology, Vol. 84, Issue 2
Variation in Dissolved Organic Matter Controls Bacterial Production and Community Composition
journal, August 2006
- Judd, Kristin E.; Crump, Byron C.; Kling, George W.
- Ecology, Vol. 87, Issue 8
Interannual dynamics and phenology of bacterial communities in a eutrophic lake
journal, March 2007
- Shade, Ashley; Kent, Angela D.; Jones, Stuart E.
- Limnology and Oceanography, Vol. 52, Issue 2
Similarity of particle-associated and free-living bacterial communities in northern San Francisco Bay, California
journal, January 2000
- Hollibaugh, Jt; Wong, Ps; Murrell, Mc
- Aquatic Microbial Ecology, Vol. 21
Spatial-Temporal Changes of Bacterioplankton Community along an Exhorheic River
journal, March 2016
- Ma, Lili; Mao, Guannan; Liu, Jie
- Frontiers in Microbiology, Vol. 7
Global patterns of diversity and community structure in marine bacterioplankton: MARINE BACTERIA DIVERSITY and DISTRIBUTION
journal, December 2006
- Pommier, T.; CanbÄCk, B.; Riemann, L.
- Molecular Ecology, Vol. 16, Issue 4
Ecology of marine Bacteroidetes: a comparative genomics approach
journal, January 2013
- Fernández-Gómez, Beatriz; Richter, Michael; Schüler, Margarete
- The ISME Journal, Vol. 7, Issue 5
Determining indicator taxa across spatial and seasonal gradients in the Columbia River coastal margin
journal, May 2013
- Fortunato, Caroline S.; Eiler, Alexander; Herfort, Lydie
- The ISME Journal, Vol. 7, Issue 10
Influence of the Amazon River plume on distributions of free-living and symbiotic cyanobacteria in the western tropical north Atlantic Ocean
journal, March 2007
- Foster, R. A.; Subramaniam, A.; Mahaffey, C.
- Limnology and Oceanography, Vol. 52, Issue 2
The Amazon River Plume during AMASSEDS: Spatial characteristics and salinity variability
journal, January 1995
- Lentz, Steven J.; Limeburner, Richard
- Journal of Geophysical Research, Vol. 100, Issue C2
Distance-Based Redundancy Analysis: Testing Multispecies Responses in Multifactorial Ecological Experiments
journal, February 1999
- Legendre, Pierre; Anderson, Marti J.
- Ecological Monographs, Vol. 69, Issue 1
Annually reoccurring bacterial communities are predictable from ocean conditions
journal, August 2006
- Fuhrman, J. A.; Hewson, I.; Schwalbach, M. S.
- Proceedings of the National Academy of Sciences, Vol. 103, Issue 35
Microspatial gene expression patterns in the Amazon River Plume
journal, July 2014
- Satinsky, B. M.; Crump, B. C.; Smith, C. B.
- Proceedings of the National Academy of Sciences, Vol. 111, Issue 30
Non-Random Assembly of Bacterioplankton Communities in the Subtropical North Pacific Ocean
journal, January 2011
- Eiler, Alexander; Hayakawa, Darin H.; Rappé, Michael S.
- Frontiers in Microbiology, Vol. 2
Metatranscriptomics of N2-fixing cyanobacteria in the Amazon River plume
journal, December 2014
- Hilton, Jason A.; Satinsky, Brandon M.; Doherty, Mary
- The ISME Journal, Vol. 9, Issue 7
Different community structure and temperature optima of heterotrophic picoplankton in various regions of the Southern Ocean
journal, January 1999
- Simon, M.; Glöckner, Fo; Amann, R.
- Aquatic Microbial Ecology, Vol. 18
Free-Living and Particle-Associated Bacterioplankton in Large Rivers of the Mississippi River Basin Demonstrate Biogeographic Patterns
journal, September 2014
- Jackson, Colin R.; Millar, Justin J.; Payne, Jason T.
- Applied and Environmental Microbiology, Vol. 80, Issue 23
Spatial biodiversity of bacteria along the largest Arctic river determined by next-generation sequencing
journal, June 2014
- Kolmakova, Olesya V.; Gladyshev, Michail I.; Rozanov, Alexey S.
- FEMS Microbiology Ecology, Vol. 89, Issue 2
Microbial community dynamics in a humic lake: differential persistence of common freshwater phylotypes
journal, June 2006
- Newton, Ryan J.; Kent, Angela D.; Triplett, Eric W.
- Environmental Microbiology, Vol. 8, Issue 6
Synchrony and seasonality in bacterioplankton communities of two temperate rivers
journal, November 2005
- Crump, Byron C.; Hobbie, John E.
- Limnology and Oceanography, Vol. 50, Issue 6
The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific
journal, March 2007
- Rusch, Douglas B.; Halpern, Aaron L.; Sutton, Granger
- PLoS Biology, Vol. 5, Issue 3
Amazon River influence on nitrogen fixation and export production in the western tropical North Atlantic: Amazon River influence on nitrogen fixation
journal, November 2016
- Weber, Sarah C.; Carpenter, Edward J.; Coles, Victoria J.
- Limnology and Oceanography, Vol. 62, Issue 2
Seasonal changes in microbial community composition in river water studied using 454-pyrosequencing
journal, April 2016
- Kaevska, Marija; Videnska, Petra; Sedlar, Karel
- SpringerPlus, Vol. 5, Issue 1
Impact of diatom-diazotroph associations on carbon export in the Amazon River plume: DDA IMPACT ON AMAZON PLUME CARBON EXPORT
journal, September 2012
- Yeung, Laurence Y.; Berelson, William M.; Young, Edward D.
- Geophysical Research Letters, Vol. 39, Issue 18
Use of Internal Standards for Quantitative Metatranscriptome and Metagenome Analysis
book, January 2013
- Satinsky, Brandon M.; Gifford, Scott M.; Crump, Byron C.
- Methods in Enzymology
Substrate-Controlled Succession of Marine Bacterioplankton Populations Induced by a Phytoplankton Bloom
journal, May 2012
- Teeling, H.; Fuchs, B. M.; Becher, D.
- Science, Vol. 336, Issue 6081
A method of estimating in-stream residence time of water in rivers
journal, May 2014
- Worrall, F.; Howden, N. J. K.; Burt, T. P.
- Journal of Hydrology, Vol. 512
Amazon River enhances diazotrophy and carbon sequestration in the tropical North Atlantic Ocean
journal, July 2008
- Subramaniam, A.; Yager, P. L.; Carpenter, E. J.
- Proceedings of the National Academy of Sciences, Vol. 105, Issue 30
Changes in the community structure of free-living heterotrophic bacteria in the open tropical Pacific Ocean in response to microalgal lysate-derived dissolved organic matter
journal, May 2016
- Tada, Yuya; Suzuki, Koji
- FEMS Microbiology Ecology, Vol. 92, Issue 7
Nutrient dynamics in Amazon shelf waters: results from AMASSEDS
journal, March 1996
- Demaster, David J.; Pope, Robert H.
- Continental Shelf Research, Vol. 16, Issue 3
The compositional evolution of dissolved and particulate organic matter along the lower Amazon River—Óbidos to the ocean
journal, December 2015
- Ward, Nicholas D.; Krusche, Alex V.; Sawakuchi, Henrique O.
- Marine Chemistry, Vol. 177
Spatiotemporal dynamics and determinants of planktonic bacterial and microeukaryotic communities in a Chinese subtropical river
journal, July 2015
- Wang, Yongming; Liu, Lemian; Chen, Huihuang
- Applied Microbiology and Biotechnology, Vol. 99, Issue 21
Molecular-level changes of dissolved organic matter along the Amazon River-to-ocean continuum
journal, December 2015
- Seidel, Michael; Yager, Patricia L.; Ward, Nicholas D.
- Marine Chemistry, Vol. 177
Species sorting and seasonal dynamics primarily shape bacterial communities in the Upper Mississippi River
journal, February 2015
- Staley, Christopher; Gould, Trevor J.; Wang, Ping
- Science of The Total Environment, Vol. 505
Global distribution and diversity of marine Verrucomicrobia
journal, February 2012
- Freitas, Sara; Hatosy, Stephen; Fuhrman, Jed A.
- The ISME Journal, Vol. 6, Issue 8
Defining seasonal marine microbial community dynamics
journal, August 2011
- Gilbert, Jack A.; Steele, Joshua A.; Caporaso, J. Gregory
- The ISME Journal, Vol. 6, Issue 2
The reactivity of plant-derived organic matter and the potential importance of priming effects along the lower Amazon River: ORGANIC MATTER REACTIVITY IN THE AMAZON
journal, June 2016
- Ward, Nicholas D.; Bianchi, Thomas S.; Sawakuchi, Henrique O.
- Journal of Geophysical Research: Biogeosciences, Vol. 121, Issue 6
Bacterial diversity, community structure and potential growth rates along an estuarine salinity gradient
journal, August 2012
- Campbell, Barbara J.; Kirchman, David L.
- The ISME Journal, Vol. 7, Issue 1
Interactions between marine snow and heterotrophic bacteria: aggregate formation and microbial dynamics
journal, January 2006
- Grossart, Hp; Kiørboe, T.; Tang, Kw
- Aquatic Microbial Ecology, Vol. 42
Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea
journal, April 2011
- Herlemann, Daniel PR; Labrenz, Matthias; Jürgens, Klaus
- The ISME Journal, Vol. 5, Issue 10
Phylogenetic Analysis of Particle-Attached and Free-Living Bacterial Communities in the Columbia River, Its Estuary, and the Adjacent Coastal Ocean
journal, July 1999
- Crump, Byron C.; Armbrust, E. Virginia; Baross, John A.
- Applied and Environmental Microbiology, Vol. 65, Issue 7
DNA recovery from soils of diverse composition.
journal, January 1996
- Zhou, J.; Bruns, M. A.; Tiedje, J. M.
- Applied and environmental microbiology, Vol. 62, Issue 2
CoNet app: inference of biological association networks using Cytoscape
journal, January 2016
- Faust, Karoline; Raes, Jeroen
- F1000Research, Vol. 5
Species Assemblages and Indicator Species:The need for a Flexible Asymmetrical Approach
journal, August 1997
- Dufrêne, Marc; Legendre, Pierre
- Ecological Monographs, Vol. 67, Issue 3
Spatial variability of particle-attached and free-living bacterial diversity in surface waters from the Mackenzie River to the Beaufort Sea (Canadian Arctic)
posted_content, December 2012
- Ortega-Retuerta, E.; Joux, F.; Jeffrey, W. H.
- Biogeosciences Discussions
Influence of the Amazon River plume on distributions of free-living and symbiotic cyanobacteria in the western tropical north Atlantic Ocean
text, January 2007
- Foster, R. A.; Subramaniam, Ajit; Mahaffey, C.
- Columbia University
Pelagicoccus croceus sp. nov., a novel marine member of the
family Puniceicoccaceae within the phylum ‘Verrucomicrobia’ isolated from seagrass
journal, March 2010
- Yoon, Jaewoo; Oku, Naoya; Matsuda, Satoru
- International Journal of Systematic and Evolutionary Microbiology, Vol. 60, Issue 3
Influence of the Amazon River Discharge on the Biogeography of Phytoplankton Communities in the Western Tropical North Atlantic
text, January 2014
- Goes, Joaquim I.; Gomes, Maria Fatima Helga D.; Carpenter, Edward J.
- Columbia University
Nitrogen sources and net growth efficiency of zooplankton in three Amazon River plume food webs: Zooplankton net growth efficiency in the Amazon plume
journal, November 2015
- Loick-Wilde, Natalie; Weber, Sarah C.; Conroy, Brandon J.
- Limnology and Oceanography, Vol. 61, Issue 2
Amazon River influence on nitrogen fixation and export production in the western tropical North Atlantic: Amazon River influence on nitrogen fixation
journal, November 2016
- Weber, Sarah C.; Carpenter, Edward J.; Coles, Victoria J.
- Limnology and Oceanography, Vol. 62, Issue 2
Community Dynamics of Free-living and Particle-associated Bacterial Assemblages during a Freshwater Phytoplankton Bloom
journal, October 2001
- Riemann, L.; Winding, A.
- Microbial Ecology, Vol. 42, Issue 3
Annual Patterns in Bacterioplankton Community Variability in a Humic Lake
journal, October 2004
- Kent, A. D.; Jones, S. E.; Yannarell, A. C.
- Microbial Ecology, Vol. 48, Issue 4
Description of Freshwater Bacterial Assemblages from the Upper Paraná River Floodpulse System, Brazil
journal, June 2008
- Lemke, Michael J.; Lienau, E. Kurt; Rothe, Jean
- Microbial Ecology, Vol. 57, Issue 1
Bacterioplankton Community Variation Across River to Ocean Environmental Gradients
journal, February 2011
- Fortunato, Caroline S.; Crump, Byron C.
- Microbial Ecology, Vol. 62, Issue 2
Stability of Bacterial Composition and Activity in Different Salinity Waters in the Dynamic Patos Lagoon Estuary: Evidence from a Lagrangian-Like Approach
journal, June 2013
- They, Ng Haig; Ferreira, Lise Maria Holanda; Marins, Luís Fernando
- Microbial Ecology, Vol. 66, Issue 3
Spatiotemporal dynamics and determinants of planktonic bacterial and microeukaryotic communities in a Chinese subtropical river
journal, July 2015
- Wang, Yongming; Liu, Lemian; Chen, Huihuang
- Applied Microbiology and Biotechnology, Vol. 99, Issue 21
Potential forensic biogeographic application of diatom colony consistency analysis employing pyrosequencing profiles of the 18S rDNA V7 region
journal, May 2018
- Zhao, Yuancun; Chen, Xiaogang; Yang, Yiwen
- International Journal of Legal Medicine, Vol. 132, Issue 6
Seasonal and spatial variability of dissolved organic matter composition in the lower Amazon River
journal, November 2016
- Seidel, Michael; Dittmar, Thorsten; Ward, Nicholas D.
- Biogeochemistry, Vol. 131, Issue 3
Spatiotemporal Variability in Dissolved Organic Matter Composition is More Strongly Related to Bacterioplankton Community Composition than to Metabolic Capability in a Blackwater Estuarine System
journal, June 2013
- Wear, Emma K.; Koepfler, Eric T.; Smith, Erik M.
- Estuaries and Coasts, Vol. 37, Issue 1
Estimating cell-to-cell land surface drainage paths from digital channel networks, with an application to the Amazon basin
journal, December 2005
- Mayorga, Emilio; Logsdon, Miles G.; Ballester, Maria Victoria R.
- Journal of Hydrology, Vol. 315, Issue 1-4
A method of estimating in-stream residence time of water in rivers
journal, May 2014
- Worrall, F.; Howden, N. J. K.; Burt, T. P.
- Journal of Hydrology, Vol. 512
The compositional evolution of dissolved and particulate organic matter along the lower Amazon River—Óbidos to the ocean
journal, December 2015
- Ward, Nicholas D.; Krusche, Alex V.; Sawakuchi, Henrique O.
- Marine Chemistry, Vol. 177
Molecular-level changes of dissolved organic matter along the Amazon River-to-ocean continuum
journal, December 2015
- Seidel, Michael; Yager, Patricia L.; Ward, Nicholas D.
- Marine Chemistry, Vol. 177
Infrequent marine–freshwater transitions in the microbial world
journal, September 2009
- Logares, Ramiro; Bråte, Jon; Bertilsson, Stefan
- Trends in Microbiology, Vol. 17, Issue 9
Combined phylogenetic and genomic approaches for the high-throughput study of microbial habitat adaptation
journal, October 2011
- Zaneveld, Jesse R. R.; Parfrey, Laura Wegener; Van Treuren, Will
- Trends in Microbiology, Vol. 19, Issue 10
Impact of diatom-diazotroph associations on carbon export in the Amazon River plume: DDA IMPACT ON AMAZON PLUME CARBON EXPORT
journal, September 2012
- Yeung, Laurence Y.; Berelson, William M.; Young, Edward D.
- Geophysical Research Letters, Vol. 39, Issue 18
Outgassing from Amazonian rivers and wetlands as a large tropical source of atmospheric CO2
journal, April 2002
- Richey, Jeffrey E.; Melack, John M.; Aufdenkampe, Anthony K.
- Nature, Vol. 416, Issue 6881
Pyrosequencing reveals contrasting seasonal dynamics of taxa within Baltic Sea bacterioplankton communities
journal, October 2009
- Andersson, Anders F.; Riemann, Lasse; Bertilsson, Stefan
- The ISME Journal, Vol. 4, Issue 2
Seasonality and vertical structure of microbial communities in an ocean gyre
journal, June 2009
- Treusch, Alexander H.; Vergin, Kevin L.; Finlay, Liam A.
- The ISME Journal, Vol. 3, Issue 10
Defining seasonal marine microbial community dynamics
journal, August 2011
- Gilbert, Jack A.; Steele, Joshua A.; Caporaso, J. Gregory
- The ISME Journal, Vol. 6, Issue 2
Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea
journal, April 2011
- Herlemann, Daniel PR; Labrenz, Matthias; Jürgens, Klaus
- The ISME Journal, Vol. 5, Issue 10
Ecology of marine Bacteroidetes: a comparative genomics approach
journal, January 2013
- Fernández-Gómez, Beatriz; Richter, Michael; Schüler, Margarete
- The ISME Journal, Vol. 7, Issue 5
Global distribution and diversity of marine Verrucomicrobia
journal, February 2012
- Freitas, Sara; Hatosy, Stephen; Fuhrman, Jed A.
- The ISME Journal, Vol. 6, Issue 8
Bacterial diversity, community structure and potential growth rates along an estuarine salinity gradient
journal, August 2012
- Campbell, Barbara J.; Kirchman, David L.
- The ISME Journal, Vol. 7, Issue 1
Determining indicator taxa across spatial and seasonal gradients in the Columbia River coastal margin
journal, May 2013
- Fortunato, Caroline S.; Eiler, Alexander; Herfort, Lydie
- The ISME Journal, Vol. 7, Issue 10
Catchment-scale biogeography of riverine bacterioplankton
journal, September 2014
- Read, Daniel S.; Gweon, Hyun S.; Bowes, Michael J.
- The ISME Journal, Vol. 9, Issue 2
Degradation of terrestrially derived macromolecules in the Amazon River
journal, May 2013
- Ward, Nicholas D.; Keil, Richard G.; Medeiros, Patricia M.
- Nature Geoscience, Vol. 6, Issue 7
Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex
journal, February 2008
- Hamady, Micah; Walker, Jeffrey J.; Harris, J. Kirk
- Nature Methods, Vol. 5, Issue 3, p. 235-237
Master recyclers: features and functions of bacteria associated with phytoplankton blooms
journal, August 2014
- Buchan, Alison; LeCleir, Gary R.; Gulvik, Christopher A.
- Nature Reviews Microbiology, Vol. 12, Issue 10
Relationships Between Environmental Conditions And Fish Assemblages In Tropical Savanna Headwater Streams
journal, February 2020
- Vieira, Thiago Bernardi; Tejerina-Garro, Francisco Leonardo
- Scientific Reports, Vol. 10, Issue 1
Site-specific molecular analysis of the bacteriota on worn spectacles
journal, March 2020
- Fritz, Birgit; März, Melanie; Weis, Severin
- Scientific Reports, Vol. 10, Issue 1
Infant gut microbiota characteristics generally do not modify effects of lipid-based nutrient supplementation on growth or inflammation: secondary analysis of a randomized controlled trial in Malawi
journal, September 2020
- Hughes, Riley L.; Arnold, Charles D.; Young, Rebecca R.
- Scientific Reports, Vol. 10, Issue 1
Environmental factors shape the epiphytic bacterial communities of Gracilariopsis lemaneiformis
journal, April 2021
- Pei, Pengbing; Aslam, Muhammad; Du, Hong
- Scientific Reports, Vol. 11, Issue 1
Annually reoccurring bacterial communities are predictable from ocean conditions
journal, August 2006
- Fuhrman, J. A.; Hewson, I.; Schwalbach, M. S.
- Proceedings of the National Academy of Sciences, Vol. 103, Issue 35
Global patterns in bacterial diversity
journal, June 2007
- Lozupone, C. A.; Knight, R.
- Proceedings of the National Academy of Sciences, Vol. 104, Issue 27
Amazon River enhances diazotrophy and carbon sequestration in the tropical North Atlantic Ocean
journal, July 2008
- Subramaniam, A.; Yager, P. L.; Carpenter, E. J.
- Proceedings of the National Academy of Sciences, Vol. 105, Issue 30
Circumpolar synchrony in big river bacterioplankton
journal, November 2009
- Crump, Byron C.; Peterson, Bruce J.; Raymond, Peter A.
- Proceedings of the National Academy of Sciences, Vol. 106, Issue 50
Microspatial gene expression patterns in the Amazon River Plume
journal, July 2014
- Satinsky, B. M.; Crump, B. C.; Smith, C. B.
- Proceedings of the National Academy of Sciences, Vol. 111, Issue 30
The Simes Method for Multiple Hypothesis Testing with Positively Dependent Test Statistics
journal, December 1997
- Sarkar, Sanat K.; Chang, Chung-Kuei
- Journal of the American Statistical Association, Vol. 92, Issue 440
Changes in the community structure of free-living heterotrophic bacteria in the open tropical Pacific Ocean in response to microalgal lysate-derived dissolved organic matter
journal, May 2016
- Tada, Yuya; Suzuki, Koji
- FEMS Microbiology Ecology, Vol. 92, Issue 7
Pelagicoccus croceus sp. nov., a novel marine member of the family Puniceicoccaceae within the phylum 'Verrucomicrobia' isolated from seagrass
journal, December 2007
- Yoon, J.; Oku, N.; Matsuda, S.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 57, Issue 12
Biogeography of bacterioplankton in the tropical seawaters of Singapore
journal, January 2013
- Lau, Stanley C. K.; Zhang, Rui; Brodie, Eoin L.
- FEMS Microbiology Ecology, Vol. 84, Issue 2
Effects of large river dam regulation on bacterioplankton community structure
journal, January 2013
- Ruiz-González, Clara; Proia, Lorenzo; Ferrera, Isabel
- FEMS Microbiology Ecology, Vol. 84, Issue 2
Terrestrial origin of bacterial communities in complex boreal freshwater networks
journal, August 2015
- Ruiz-González, Clara; Niño-García, Juan Pablo; del Giorgio, Paul A.
- Ecology Letters, Vol. 18, Issue 11
Microbial community dynamics in a humic lake: differential persistence of common freshwater phylotypes
journal, June 2006
- Newton, Ryan J.; Kent, Angela D.; Triplett, Eric W.
- Environmental Microbiology, Vol. 8, Issue 6
Macroecological patterns of marine bacteria on a global scale
journal, November 2012
- Amend, Anthony S.; Oliver, Tom A.; Amaral-Zettler, Linda A.
- Journal of Biogeography, Vol. 40, Issue 4
Substrate-Controlled Succession of Marine Bacterioplankton Populations Induced by a Phytoplankton Bloom
journal, May 2012
- Teeling, H.; Fuchs, B. M.; Becher, D.
- Science, Vol. 336, Issue 6081
Longitudinal Changes in the Bacterial Community Composition of the Danube River: a Whole-River Approach
journal, November 2006
- Winter, C.; Hein, T.; Kavka, G.
- Applied and Environmental Microbiology, Vol. 73, Issue 2
Flavobacteria Blooms in Four Eutrophic Lakes: Linking Population Dynamics of Freshwater Bacterioplankton to Resource Availability
journal, April 2007
- Eiler, A.; Bertilsson, S.
- Applied and Environmental Microbiology, Vol. 73, Issue 11
Succession of Bacterial Community Structure along the Changjiang River Determined by Denaturing Gradient Gel Electrophoresis and Clone Library Analysis
journal, October 2002
- Sekiguchi, H.; Watanabe, M.; Nakahara, T.
- Applied and Environmental Microbiology, Vol. 68, Issue 10
The Amazon continuum dataset: quantitative metagenomic and metatranscriptomic inventories of the Amazon River plume, June 2010
journal, January 2014
- Satinsky, Brandon M.; Zielinski, Brian L.; Doherty, Mary
- Microbiome, Vol. 2, Issue 1
Seasonal changes in microbial community composition in river water studied using 454-pyrosequencing
journal, April 2016
- Kaevska, Marija; Videnska, Petra; Sedlar, Karel
- SpringerPlus, Vol. 5, Issue 1
Metagenomic and metatranscriptomic inventories of the lower Amazon River, May 2011
journal, September 2015
- Satinsky, Brandon M.; Fortunato, Caroline S.; Doherty, Mary
- Microbiome, Vol. 3, Issue 1
The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific
journal, March 2007
- Rusch, Douglas B.; Halpern, Aaron L.; Sutton, Granger
- PLoS Biology, Vol. 5, Issue 3
Microbial Co-occurrence Relationships in the Human Microbiome
journal, July 2012
- Faust, Karoline; Sathirapongsasuti, J. Fah; Izard, Jacques
- PLoS Computational Biology, Vol. 8, Issue 7
Influence of Salinity on Bacterioplankton Communities from the Brazilian Rain Forest to the Coastal Atlantic Ocean
journal, March 2011
- Silveira, Cynthia B.; Vieira, Ricardo P.; Cardoso, Alexander M.
- PLoS ONE, Vol. 6, Issue 3
Metagenomics of the Water Column in the Pristine Upper Course of the Amazon River
journal, August 2011
- Ghai, Rohit; Rodŕíguez-Valera, Francisco; McMahon, Katherine D.
- PLoS ONE, Vol. 6, Issue 8
Bacterioplankton Community Composition in Flowing Waters of the Ipswich River Watershed
journal, October 2002
- Levine, Uri Y.; Crump, Byron C.
- The Biological Bulletin, Vol. 203, Issue 2
Canonical Correspondence Analysis: A New Eigenvector Technique for Multivariate Direct Gradient Analysis
journal, October 1986
- ter Braak, Cajo J. F.
- Ecology, Vol. 67, Issue 5
Species Assemblages and Indicator Species: The Need for a Flexible Asymmetrical Approach
journal, August 1997
- Dufrene, Marc; Legendre, Pierre
- Ecological Monographs, Vol. 67, Issue 3
Comparison of free-living, suspended particle, and aggregate-associated Bacterial and Archaeal communities in the Laptev Sea
journal, September 2009
- Kellogg, Cte; Deming, Jw
- Aquatic Microbial Ecology, Vol. 57
Different community structure and temperature optima of heterotrophic picoplankton in various regions of the Southern Ocean
journal, January 1999
- Simon, M.; Glöckner, Fo; Amann, R.
- Aquatic Microbial Ecology, Vol. 18
Similarity of particle-associated and free-living bacterial communities in northern San Francisco Bay, California
journal, January 2000
- Hollibaugh, Jt; Wong, Ps; Murrell, Mc
- Aquatic Microbial Ecology, Vol. 21
Bacterial activity and genetic richness along an estuarine gradient (Rhone River plume, France)
journal, January 2002
- Troussellier, M.; Schäfer, H.; Batailler, N.
- Aquatic Microbial Ecology, Vol. 28
Interactions between marine snow and heterotrophic bacteria: aggregate formation and microbial dynamics
journal, January 2006
- Grossart, Hp; Kiørboe, T.; Tang, Kw
- Aquatic Microbial Ecology, Vol. 42
Influence of Amazon and Orinoco offshore surface water plumes on oligotrophic bacterioplankton diversity in the west tropical Atlantic
journal, May 2006
- Hewson, I.; Capone, Dg; Steele, Ja
- Aquatic Microbial Ecology, Vol. 43
Bacterial assemblage structure and carbon metabolism along a productivity gradient in the NE Atlantic Ocean
journal, January 2007
- Alonso-Sáez, L.; Arístegui, J.; Pinhassi, J.
- Aquatic Microbial Ecology, Vol. 46
Extensive bloom of a N2-fixing diatom/cyanobacterial association in the tropical Atlantic Ocean
journal, January 1999
- Carpenter, Ej; Montoya, Jp; Burns, J.
- Marine Ecology Progress Series, Vol. 185
Non-Random Assembly of Bacterioplankton Communities in the Subtropical North Pacific Ocean
journal, January 2011
- Eiler, Alexander; Hayakawa, Darin H.; Rappé, Michael S.
- Frontiers in Microbiology, Vol. 2
Analysis of Composition and Structure of Coastal to Mesopelagic Bacterioplankton Communities in the Northern Gulf of Mexico
journal, January 2013
- King, Gary M.; Smith, Conor B.; Tolar, Bradley
- Frontiers in Microbiology, Vol. 3
Core functional traits of bacterial communities in the Upper Mississippi River show limited variation in response to land cover
journal, August 2014
- Staley, Christopher; Gould, Trevor J.; Wang, Ping
- Frontiers in Microbiology, Vol. 5
Particle-Associated Differ from Free-Living Bacteria in Surface Waters of the Baltic Sea
journal, December 2015
- Rieck, Angelika; Herlemann, Daniel P. R.; Jürgens, Klaus
- Frontiers in Microbiology, Vol. 6
Mississippi River Plume Enriches Microbial Diversity in the Northern Gulf of Mexico
journal, July 2016
- Mason, Olivia U.; Canter, Erin J.; Gillies, Lauren E.
- Frontiers in Microbiology, Vol. 7
Complete genome sequence of Coraliomargarita akajimensis type strain (04OKA010-24T)
journal, June 2010
- Mavromatis, Konstantinos; Abt, Birte; Brambilla, Evelyne
- Standards in Genomic Sciences, Vol. 2, Issue 3
Comparison of bacterial communities in the Solimões and Negro River tributaries of the Amazon River based on small subunit rRNA gene sequences
journal, January 2011
- Peixoto, J. C. C.; Leomil, L.; Souza, J. V.
- Genetics and Molecular Research, Vol. 10, Issue 4
Biogeochemistry of carbon in the Amazon River
journal, March 1990
- Richey, Jeffrey E.; Hedges, John I.; Devol, Allan H.
- Limnology and Oceanography, Vol. 35, Issue 2
Phylogenetic diversity of aggregate-attached vs. free-living marine bacterial assemblages
journal, July 1993
- DeLong, Edward F.; Franks, Diana G.; Alldredge, Alice L.
- Limnology and Oceanography, Vol. 38, Issue 5
Bacterial carbon metabolism in the Amazon River system
journal, November 1995
- Benner, Ronald; Opsahl, Stephen; Chin-Leo, Gerardo
- Limnology and Oceanography, Vol. 40, Issue 7
Synchrony and seasonality in bacterioplankton communities of two temperate rivers
journal, November 2005
- Crump, Byron C.; Hobbie, John E.
- Limnology and Oceanography, Vol. 50, Issue 6
Interannual dynamics and phenology of bacterial communities in a eutrophic lake
journal, March 2007
- Shade, Ashley; Kent, Angela D.; Jones, Stuart E.
- Limnology and Oceanography, Vol. 52, Issue 2
Influence of the Amazon River plume on distributions of free-living and symbiotic cyanobacteria in the western tropical north Atlantic Ocean
journal, March 2007
- Foster, R. A.; Subramaniam, A.; Mahaffey, C.
- Limnology and Oceanography, Vol. 52, Issue 2
Organic matter diagenesis and bacterial contributions to detrital carbon and nitrogen in the Amazon River system
journal, May 2009
- Tremblay, Luc; Benner, Ronald
- Limnology and Oceanography, Vol. 54, Issue 3
Factors controlling water-column respiration in rivers of the central and southwestern Amazon Basin
journal, March 2012
- Ellis, Erin E.; Richey, Jeffrey E.; Aufdenkampe, Anthony K.
- Limnology and Oceanography, Vol. 57, Issue 2
Influence of the Amazon River Discharge on the Biogeography of Phytoplankton Communities in the Western Tropical North Atlantic
text, January 2014
- Goes, Joaquim I.; Gomes, Maria Fatima Helga D.; Carpenter, Edward J.
- Columbia University
Works referencing / citing this record:
Patterns and processes of free‐living and particle‐associated bacterioplankton and archaeaplankton communities in a subtropical river‐bay system in South China
journal, January 2020
- Wang, Yongming; Pan, Jie; Yang, Jun
- Limnology and Oceanography, Vol. 65, Issue S1
Plankton community interactions in an Amazonian floodplain lake, from bacteria to zooplankton
journal, January 2019
- Feitosa, I. B.; Huszar, V. L. M.; Domingues, C. D.
- Hydrobiologia, Vol. 831, Issue 1
Distinct distribution patterns of ammonia-oxidizing archaea and bacteria in sediment and water column of the Yellow River estuary
journal, January 2018
- Li, Mingcong; Wei, Guangshan; Shi, Wenchong
- Scientific Reports, Vol. 8, Issue 1
Primer selection impacts specific population abundances but not community dynamics in a monthly time-series 16S rRNA gene amplicon analysis of coastal marine bacterioplankton: Primer choice effects on populations, communities
journal, April 2018
- Wear, Emma K.; Wilbanks, Elizabeth G.; Nelson, Craig E.
- Environmental Microbiology, Vol. 20, Issue 8
Primer Design for an Accurate View of Picocyanobacterial Community Structure by Using High-Throughput Sequencing
journal, February 2019
- Huber, Paula; Cornejo-Castillo, Francisco M.; Ferrera, Isabel
- Applied and Environmental Microbiology, Vol. 85, Issue 7
Enhanced Aquatic Respiration Associated With Mixing of Clearwater Tributary and Turbid Amazon River Waters
journal, May 2019
- Ward, Nicholas D.; Sawakuchi, Henrique O.; Richey, Jeffrey E.
- Frontiers in Earth Science, Vol. 7
Biogeographical distribution of microbial communities along the Rajang River–South China Sea continuum
journal, January 2019
- Sia, Edwin Sien Aun; Zhu, Zhuoyi; Zhang, Jing
- Biogeosciences, Vol. 16, Issue 21
Predicting Hydrologic Function With Aquatic Gene Fragments
journal, March 2018
- Good, S. P.; URycki, D. R.; Crump, B. C.
- Water Resources Research, Vol. 54, Issue 3
Comparison of specific endophytic bacterial communities in different developmental stages of Passiflora incarnata using culture‐dependent and culture‐independent analysis
journal, July 2019
- Goulart, Marcela C.; Cueva‐Yesquén, Luis G.; Hidalgo Martinez, Kelly J.
- MicrobiologyOpen, Vol. 8, Issue 10
Flood pulse regulation of bacterioplankton community composition in an Amazonian floodplain lake
journal, November 2018
- de Melo, Michaela L.; Bertilsson, Stefan; Amaral, João Henrique F.
- Freshwater Biology, Vol. 64, Issue 1
Spatial heterogeneity and hydrological fluctuations drive bacterioplankton community composition in an Amazon floodplain system
journal, August 2019
- Câmara dos Reis, Mariana; Lacativa Bagatini, Inessa; de Oliveira Vidal, Luciana
- PLOS ONE, Vol. 14, Issue 8
Shift of Bacterial Community Structures in Sediments From the Changjiang (Yangtze River) Estuary to the East China Sea Linked to Environmental Gradients
text, January 2018
- Liu, Qian; Wu, Yue-Hong; Liao, Li
- Taylor & Francis
Ocean biogeochemistry modeled with emergent trait-based genomics
journal, November 2017
- Coles, V. J.; Stukel, M. R.; Brooks, M. T.
- Science, Vol. 358, Issue 6367
Shift of Bacterial Community Structures in Sediments From the Changjiang (Yangtze River) Estuary to the East China Sea Linked to Environmental Gradients
text, January 2018
- Liu, Qian; Wu, Yue-Hong; Liao, Li
- Taylor & Francis
Shift of Bacterial Community Structures in Sediments From the Changjiang (Yangtze River) Estuary to the East China Sea Linked to Environmental Gradients
journal, September 2018
- Liu, Qian; Wu, Yue-Hong; Liao, Li
- Geomicrobiology Journal, Vol. 35, Issue 10
Correction: Spatial heterogeneity and hydrological fluctuations drive bacterioplankton community composition in an Amazon floodplain system
journal, January 2020
- Câmara dos Reis, Mariana; Lacativa Bagatini, Inessa; de Oliveira Vidal, Luciana
- PLOS ONE, Vol. 15, Issue 1
Comparison of specific endophytic bacterial communities in different developmental stages of Passiflora incarnata using culture‐dependent and culture‐independent analysis
journal, July 2019
- Goulart, Marcela C.; Cueva‐Yesquén, Luis G.; Hidalgo Martinez, Kelly J.
- MicrobiologyOpen, Vol. 8, Issue 10
Microbial Community Structure–Function Relationships in Yaquina Bay Estuary Reveal Spatially Distinct Carbon and Nitrogen Cycling Capacities
journal, June 2018
- Kieft, Brandon; Li, Zhou; Bryson, Samuel
- Frontiers in Microbiology, Vol. 9