Dissociation of sarin on a cement analogue surface: Effects of humidity and confined geometry
Abstract
Here, first-principles molecular dynamics simulations were used to investigate the dissociation of sarin (GB) on the calcium silicate hydrate (CSH) mineral tobermorite (TBM), a surrogate for cement. CSH minerals (including TBM) and amorphous materials of similar composition are the major components of Portland cement, the binding agent of concrete. Metadynamics simulations were used to investigate the effect of the TBM surface and confinement in a microscale pore on the mechanism and free energy of dissociation of GB. Our results indicate that both the adsorption site and the humidity of the local environment significantly affect the sarin dissociation energy. In particular, sarin dissociation in a low-water environment occurs via a dealkylation mechanism, which is consistent with previous experimental studies.
- Authors:
-
- Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)
- Publication Date:
- Research Org.:
- Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)
- Sponsoring Org.:
- USDOE National Nuclear Security Administration (NNSA)
- OSTI Identifier:
- 1371478
- Report Number(s):
- SAND2017-0620J
Journal ID: ISSN 1932-7447; 655052
- Grant/Contract Number:
- AC04-94AL85000
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Journal of Physical Chemistry. C
- Additional Journal Information:
- Journal Volume: 120; Journal Issue: 49; Journal ID: ISSN 1932-7447
- Publisher:
- American Chemical Society
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY; 36 MATERIALS SCIENCE
Citation Formats
O’Brien, Christopher J., Greathouse, Jeffery A., and Tenney, Craig M. Dissociation of sarin on a cement analogue surface: Effects of humidity and confined geometry. United States: N. p., 2016.
Web. doi:10.1021/acs.jpcc.6b10046.
O’Brien, Christopher J., Greathouse, Jeffery A., & Tenney, Craig M. Dissociation of sarin on a cement analogue surface: Effects of humidity and confined geometry. United States. https://doi.org/10.1021/acs.jpcc.6b10046
O’Brien, Christopher J., Greathouse, Jeffery A., and Tenney, Craig M. Tue .
"Dissociation of sarin on a cement analogue surface: Effects of humidity and confined geometry". United States. https://doi.org/10.1021/acs.jpcc.6b10046. https://www.osti.gov/servlets/purl/1371478.
@article{osti_1371478,
title = {Dissociation of sarin on a cement analogue surface: Effects of humidity and confined geometry},
author = {O’Brien, Christopher J. and Greathouse, Jeffery A. and Tenney, Craig M.},
abstractNote = {Here, first-principles molecular dynamics simulations were used to investigate the dissociation of sarin (GB) on the calcium silicate hydrate (CSH) mineral tobermorite (TBM), a surrogate for cement. CSH minerals (including TBM) and amorphous materials of similar composition are the major components of Portland cement, the binding agent of concrete. Metadynamics simulations were used to investigate the effect of the TBM surface and confinement in a microscale pore on the mechanism and free energy of dissociation of GB. Our results indicate that both the adsorption site and the humidity of the local environment significantly affect the sarin dissociation energy. In particular, sarin dissociation in a low-water environment occurs via a dealkylation mechanism, which is consistent with previous experimental studies.},
doi = {10.1021/acs.jpcc.6b10046},
journal = {Journal of Physical Chemistry. C},
number = 49,
volume = 120,
place = {United States},
year = {Tue Nov 22 00:00:00 EST 2016},
month = {Tue Nov 22 00:00:00 EST 2016}
}
Web of Science
Works referenced in this record:
Determination of the Surface Effects on Sarin Degradation
journal, April 2012
- Kuo, I-Feng W.; Grant, Christian D.; Gee, Richard H.
- The Journal of Physical Chemistry C, Vol. 116, Issue 17
Adsorption of Sarin and Soman on Dickite: An ab Initio ONIOM Study
journal, February 2004
- Michalkova, A.; Gorb, L.; Ilchenko, M.
- The Journal of Physical Chemistry B, Vol. 108, Issue 6
Theoretical Study of Adsorption of Sarin and Soman on Tetrahedral Edge Clay Mineral Fragments
journal, October 2006
- Michalkova, A.; Martinez, J.; Zhikol, O. A.
- The Journal of Physical Chemistry B, Vol. 110, Issue 42
Theoretical Study of the Adsorption and Decomposition of Sarin on Magnesium Oxide
journal, April 2004
- Michalkova, A.; Ilchenko, M.; Gorb, L.
- The Journal of Physical Chemistry B, Vol. 108, Issue 17
Long-Term Evaluation of the Fate of Sulfur Mustard on Dry and Humid Soils, Asphalt, and Concrete
journal, April 2011
- Mizrahi, Dana M.; Goldvaser, Michael; Columbus, Ishay
- Environmental Science & Technology, Vol. 45, Issue 8
Hydrolysis of VX on Concrete: Rate of Degradation by Direct Surface Interrogation Using an Ion Trap Secondary Ion Mass Spectrometer
journal, November 2002
- Groenewold, Gary S.; Williams, John M.; Appelhans, Anthony D.
- Environmental Science & Technology, Vol. 36, Issue 22
Degradation of Sulfur Mustard and Sarin over Hardened Cement Paste
journal, March 2009
- Tang, Hairong; Cheng, Zhenxing; Zhou, Liming
- Environmental Science & Technology, Vol. 43, Issue 5
Effect of Drop Size on the Degradation of VX in Concrete
journal, August 2004
- Wagner, George W.; O'Connor, Richard J.; Edwards, Jennifer L.
- Langmuir, Vol. 20, Issue 17
Molecular dynamics modeling of the structure, dynamics and energetics of mineral–water interfaces: Application to cement materials
journal, March 2007
- Kalinichev, Andrey G.; Wang, Jianwei; Kirkpatrick, R. James
- Cement and Concrete Research, Vol. 37, Issue 3
A realistic molecular model of cement hydrates
journal, September 2009
- Pellenq, R. J. -M.; Kushima, A.; Shahsavari, R.
- Proceedings of the National Academy of Sciences, Vol. 106, Issue 38
Molecular Dynamics to Understand the Mechanical Behavior of Cement Paste
journal, January 2010
- Murray, Shanique Julie; Subramani, Vikramraja Janakiram; Selvam, R. Panneer
- Transportation Research Record: Journal of the Transportation Research Board, Vol. 2142, Issue 1
Molecular dynamics study of water and ions transport in nano-pore of layered structure: A case study of tobermorite
journal, September 2014
- Hou, Dongshuai; Li, Zongjin
- Microporous and Mesoporous Materials, Vol. 195
Docking 90Sr radionuclide in cement: An atomistic modeling study
journal, January 2014
- Youssef, Mostafa; Pellenq, Roland J. -M.; Yildiz, Bilge
- Physics and Chemistry of the Earth, Parts A/B/C, Vol. 70-71
Water transport in the nano-pore of the calcium silicate phase: reactivity, structure and dynamics
journal, January 2015
- Hou, Dongshuai; Li, Zongjin; Zhao, Tiejun
- Physical Chemistry Chemical Physics, Vol. 17, Issue 2
Mesoscale texture of cement hydrates
journal, February 2016
- Ioannidou, Katerina; Krakowiak, Konrad J.; Bauchy, Mathieu
- Proceedings of the National Academy of Sciences, Vol. 113, Issue 8
The role of heterogeneity in the kinetics of a surface reactionII. Kinetics of decomposition of isopropyl methylphosphonofluoridate adsorbed on γ-alumina
journal, June 1976
- Vanbokhoven, J.; Kuiper, A.; Medema, J.
- Journal of Catalysis, Vol. 43, Issue 1-3
Investigation of the Interaction of γ-Al 2 O 3 with Aqueous Solutions of Dimethyl Methylphosphonate Using Infrared Multiple Internal Reflection Spectroscopy
journal, January 2013
- Bermudez, V. M.
- Langmuir, Vol. 29, Issue 5
The role of heterogeneity in the kinetics of a surface reactionI. Infrared characterization of the adsorption structures of organophosphonates and their decomposition
journal, June 1976
- Kuiper, A.; Vanbokhoven, J.; Medema, J.
- Journal of Catalysis, Vol. 43, Issue 1-3
Reactions of VX, GB, GD, and HD with Nanosize Al 2 O 3 . Formation of Aluminophosphonates
journal, February 2001
- Wagner, George W.; Procell, Lawrence R.; O'Connor, Richard J.
- Journal of the American Chemical Society, Vol. 123, Issue 8
Adsorption and Reaction of 2-Chloroethylethyl Sulfide with Al 2 O 3 Surfaces
journal, July 1999
- Mawhinney, Douglas B.; Rossin, Joseph A.; Gerhart, Karl
- Langmuir, Vol. 15, Issue 14
Chemical Warfare Agent Surface Adsorption: Hydrogen Bonding of Sarin and Soman to Amorphous Silica
journal, March 2014
- Davis, Erin Durke; Gordon, Wesley O.; Wilmsmeyer, Amanda R.
- The Journal of Physical Chemistry Letters, Vol. 5, Issue 8
Theoretical Study of the Adsorption of Organophosphorous Compounds to Models of a Silica Surface
journal, July 2013
- Troya, Diego; Edwards, Angela C.; Morris, John R.
- The Journal of Physical Chemistry C, Vol. 117, Issue 28
Ab initio investigation of Sarin micro-hydration
journal, September 2012
- Alam, Todd M.; Pearce, Charles J.; Jenkins, Janelle E.
- Computational and Theoretical Chemistry, Vol. 995
First-principles molecular dynamics simulations of condensed-phase V-type nerve agent reaction pathways and energy barriers
journal, January 2012
- Gee, Richard H.; Kuo, I-Feng W.; Chinn, Sarah C.
- Physical Chemistry Chemical Physics, Vol. 14, Issue 10
Decontamination of chemical warfare agents
journal, December 1992
- Yang, Yu Chu; Baker, James A.; Ward, J. Richard
- Chemical Reviews, Vol. 92, Issue 8
Destruction and Detection of Chemical Warfare Agents
journal, September 2011
- Kim, Kibong; Tsay, Olga G.; Atwood, David A.
- Chemical Reviews, Vol. 111, Issue 9
Metadynamics: a method to simulate rare events and reconstruct the free energy in biophysics, chemistry and material science
journal, November 2008
- Laio, Alessandro; Gervasio, Francesco L.
- Reports on Progress in Physics, Vol. 71, Issue 12
Molecular Models of Hydroxide, Oxyhydroxide, and Clay Phases and the Development of a General Force Field
journal, January 2004
- Cygan, Randall T.; Liang, Jian-Jie; Kalinichev, Andrey G.
- The Journal of Physical Chemistry B, Vol. 108, Issue 4
Interaction Models for Water in Relation to Protein Hydration
book, January 1981
- Berendsen, H. J. C.; Postma, J. P. M.; van Gunsteren, W. F.
- The Jerusalem Symposia on Quantum Chemistry and Biochemistry
Development and testing of a general amber force field
journal, January 2004
- Wang, Junmei; Wolf, Romain M.; Caldwell, James W.
- Journal of Computational Chemistry, Vol. 25, Issue 9
PACKMOL: A package for building initial configurations for molecular dynamics simulations
journal, October 2009
- Martínez, L.; Andrade, R.; Birgin, E. G.
- Journal of Computational Chemistry, Vol. 30, Issue 13
Fast Parallel Algorithms for Short-Range Molecular Dynamics
journal, March 1995
- Plimpton, Steve
- Journal of Computational Physics, Vol. 117, Issue 1
VMD: Visual molecular dynamics
journal, February 1996
- Humphrey, William; Dalke, Andrew; Schulten, Klaus
- Journal of Molecular Graphics, Vol. 14, Issue 1
cp2k: atomistic simulations of condensed matter systems
journal, June 2013
- Hutter, Jürg; Iannuzzi, Marcella; Schiffmann, Florian
- Wiley Interdisciplinary Reviews: Computational Molecular Science, Vol. 4, Issue 1
A hybrid Gaussian and plane wave density functional scheme
journal, October 1997
- Lippert, Gerald; Hutter, JuRG; Parrinello, Michele
- Molecular Physics, Vol. 92, Issue 3
An efficient orbital transformation method for electronic structure calculations
journal, March 2003
- VandeVondele, Joost; Hutter, Jürg
- The Journal of Chemical Physics, Vol. 118, Issue 10
Gaussian basis sets for accurate calculations on molecular systems in gas and condensed phases
journal, September 2007
- VandeVondele, Joost; Hutter, Jürg
- The Journal of Chemical Physics, Vol. 127, Issue 11
Quickstep: Fast and accurate density functional calculations using a mixed Gaussian and plane waves approach
journal, April 2005
- VandeVondele, Joost; Krack, Matthias; Mohamed, Fawzi
- Computer Physics Communications, Vol. 167, Issue 2
A consistent and accurate ab initio parametrization of density functional dispersion correction (DFT-D) for the 94 elements H-Pu
journal, April 2010
- Grimme, Stefan; Antony, Jens; Ehrlich, Stephan
- The Journal of Chemical Physics, Vol. 132, Issue 15
Escaping free-energy minima
journal, September 2002
- Laio, A.; Parrinello, M.
- Proceedings of the National Academy of Sciences, Vol. 99, Issue 20
Assessing the Accuracy of Metadynamics †
journal, April 2005
- Laio, Alessandro; Rodriguez-Fortea, Antonio; Gervasio, Francesco Luigi
- The Journal of Physical Chemistry B, Vol. 109, Issue 14
Solvation Effects on the S N 2 Reaction between CH 3 Cl and Cl - in Water
journal, April 2001
- Ensing, Bernd; Meijer, Evert Jan; Blöchl, P. E.
- The Journal of Physical Chemistry A, Vol. 105, Issue 13
Comparison of the Accurate Kohn−Sham Solution with the Generalized Gradient Approximations (GGAs) for the S N 2 Reaction F - + CH 3 F → FCH 3 + F - : A Qualitative Rule To Predict Success or Failure of GGAs
journal, August 2000
- Gritsenko, O. V.; Ensing, B.; Schipper, P. R. T.
- The Journal of Physical Chemistry A, Vol. 104, Issue 37
Works referencing / citing this record:
Theoretical study of the molecular aspect of the suspected novichok agent A234 of the Skripal poisoning
journal, February 2019
- Bhakhoa, Hanusha; Rhyman, Lydia; Ramasami, Ponnadurai
- Royal Society Open Science, Vol. 6, Issue 2