The buffering capacity of stems: genetic architecture of nonstructural carbohydrates in cultivated Asian rice, Oryza sativa
Abstract
Harnessing stem carbohydrate dynamics in grasses offers an opportunity to help meet future demands for plant-based food, fiber and fuel production, but requires a greater understanding of the genetic controls that govern the synthesis, interconversion and transport of such energy reserves. We map out a blueprint of the genetic architecture of rice (Oryza sativa) stem nonstructural carbohydrates (NSC) at two critical developmental time-points using a subpopulation-specific genome-wide association approach on two diverse germplasm panels followed by quantitative trait loci (QTL) mapping in a biparental population. Overall, 26 QTL are identified; three are detected in multiple panels and are associated with starch-at-maturity, sucrose-at-maturity and NSC-at-heading. They tag OsHXK6 (rice hexokinase), ISA2 (rice isoamylase) and a tandem array of sugar transporters. Furthermore, this study provides the foundation for more in-depth molecular investigation to validate candidate genes underlying rice stem NSC and informs future comparative studies in other agronomically vital grass species.
- Authors:
-
- Cornell Univ., Ithaca, NY (United States)
- National Renewable Energy Lab. (NREL), Golden, CO (United States)
- Publication Date:
- Research Org.:
- National Renewable Energy Laboratory (NREL), Golden, CO (United States)
- Sponsoring Org.:
- USDOE Office of Energy Efficiency and Renewable Energy (EERE)
- OSTI Identifier:
- 1369121
- Report Number(s):
- NREL/JA-5100-68716
Journal ID: ISSN 0028-646X
- Grant/Contract Number:
- AC36-08GO28308
- Resource Type:
- Accepted Manuscript
- Journal Name:
- New Phytologist
- Additional Journal Information:
- Journal Volume: 215; Journal Issue: 2; Journal ID: ISSN 0028-646X
- Publisher:
- Wiley
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 09 BIOMASS FUELS; carbon allocation; climate; genome-wide association; near-infrared spectroscopy; nonstructural carbohydrates (NSC); Oryza sativa; plasticity
Citation Formats
Wang, Diane R., Han, Rongkui, Wolfrum, Edward J., and McCouch, Susan R. The buffering capacity of stems: genetic architecture of nonstructural carbohydrates in cultivated Asian rice, Oryza sativa. United States: N. p., 2017.
Web. doi:10.1111/nph.14614.
Wang, Diane R., Han, Rongkui, Wolfrum, Edward J., & McCouch, Susan R. The buffering capacity of stems: genetic architecture of nonstructural carbohydrates in cultivated Asian rice, Oryza sativa. United States. https://doi.org/10.1111/nph.14614
Wang, Diane R., Han, Rongkui, Wolfrum, Edward J., and McCouch, Susan R. Tue .
"The buffering capacity of stems: genetic architecture of nonstructural carbohydrates in cultivated Asian rice, Oryza sativa". United States. https://doi.org/10.1111/nph.14614. https://www.osti.gov/servlets/purl/1369121.
@article{osti_1369121,
title = {The buffering capacity of stems: genetic architecture of nonstructural carbohydrates in cultivated Asian rice, Oryza sativa},
author = {Wang, Diane R. and Han, Rongkui and Wolfrum, Edward J. and McCouch, Susan R.},
abstractNote = {Harnessing stem carbohydrate dynamics in grasses offers an opportunity to help meet future demands for plant-based food, fiber and fuel production, but requires a greater understanding of the genetic controls that govern the synthesis, interconversion and transport of such energy reserves. We map out a blueprint of the genetic architecture of rice (Oryza sativa) stem nonstructural carbohydrates (NSC) at two critical developmental time-points using a subpopulation-specific genome-wide association approach on two diverse germplasm panels followed by quantitative trait loci (QTL) mapping in a biparental population. Overall, 26 QTL are identified; three are detected in multiple panels and are associated with starch-at-maturity, sucrose-at-maturity and NSC-at-heading. They tag OsHXK6 (rice hexokinase), ISA2 (rice isoamylase) and a tandem array of sugar transporters. Furthermore, this study provides the foundation for more in-depth molecular investigation to validate candidate genes underlying rice stem NSC and informs future comparative studies in other agronomically vital grass species.},
doi = {10.1111/nph.14614},
journal = {New Phytologist},
number = 2,
volume = 215,
place = {United States},
year = {Tue May 30 00:00:00 EDT 2017},
month = {Tue May 30 00:00:00 EDT 2017}
}
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Figures / Tables:
Fig. 1: Genetic architecture of stem nonstructural carbohydrates (NSC) in US tropical japonica rice. Genome-wide association results for stem NSC traits in US-TRJ (126 tropical japonica varieties): (a) starch at heading, (b) starch at maturity, (c) sucrose at heading and (d) sucrose at maturity. Red circles, single nucleotide polymorphisms (SNPs)more »
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Locus prl5 improves lodging resistance of rice by delaying senescence and increasing carbohydrate reaccumulation
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Expression profiling of genes involved in starch synthesis in sink and source organs of rice
journal, November 2005
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Non-structural carbohydrate partitioning in grass stems: a target to increase yield stability, stress tolerance, and biofuel production
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Robust phenotyping strategies for evaluation of stem non-structural carbohydrates (NSC) in rice
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The Monosaccharide Transporter Gene Family in Arabidopsis and Rice: A History of Duplications, Adaptive Evolution, and Functional Divergence
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RiceFREND: a platform for retrieving coexpressed gene networks in rice
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Functional Diversity of Isoamylase Oligomers: The ISA1 Homo-Oligomer Is Essential for Amylopectin Biosynthesis in Rice Endosperm
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Relationships of non-structural carbohydrates accumulation and translocation with yield formation in rice recombinant inbred lines under two nitrogen levels
journal, January 2011
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Function of isoamylase-type starch debranching enzymes ISA1 and ISA2 in the Zea mays leaf
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Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice
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Whole Genome Sequencing of Elite Rice Cultivars as a Comprehensive Information Resource for Marker Assisted Selection
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Genome-Wide Association of Stem Water Soluble Carbohydrates in Bread Wheat
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Association Mapping of Kernel Size and Milling Quality in Wheat ( Triticum aestivum L.) Cultivars
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Hexokinase as a Sugar Sensor in Higher Plants
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