Biodegradation of alkaline lignin by Bacillus ligniniphilus L1
Abstract
Lignin is the most abundant aromatic biopolymer in the biosphere and it comprises up to 30% of plant biomass. Although lignin is the most recalcitrant component of the plant cell wall, still there are microorganisms able to decompose it or degrade it. Fungi are recognized as the most widely used microbes for lignin degradation. However, bacteria have also been known to be able to utilize lignin as a carbon or energy source. Bacillus ligniniphilus L1 was selected in this study due to its capability to utilize alkaline lignin as a single carbon or energy source and its excellent ability to survive in extreme environments. To investigate the aromatic metabolites of strain L1 decomposing alkaline lignin, GC–MS analysis was performed and fifteen single phenol ring aromatic compounds were identified. The dominant absorption peak included phenylacetic acid, 4-hydroxy-benzoicacid, and vanillic acid with the highest proportion of metabolites resulting in 42%. Comparison proteomic analysis was carried out for further study showed that approximately 1447 kinds of proteins were produced, 141 of which were at least twofold up-regulated with alkaline lignin as the single carbon source. The up-regulated proteins contents different categories in the biological functions of protein including lignin degradation, ABC transport system,more »
- Authors:
-
- Jiangsu Univ., Zhenjiang, Jiangsu (China). School of Environment and Safety Engineering; Guangdong Inst. of Microbiology, Guangzhou, Guangdong (China). State Key Lab. of Microbial Culture Collection and Application
- Jiangsu Univ., Zhenjiang, Jiangsu (China). School of Environment and Safety Engineering
- Guangdong Inst. of Microbiology, Guangzhou, Guangdong (China). State Key Lab. of Microbial Culture Collection and Application
- Pacific Northwest National Lab. (PNNL), Richland, WA (United States). Biological Sciences Division and Environmental Molecular Sciences Lab.
- Washington State Univ., Pullman, WA (United States). Bioproducts, Sciences and Engineering Lab., Dept. of Biological Systems Engineering
- Publication Date:
- Research Org.:
- Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER)
- OSTI Identifier:
- 1357047
- Report Number(s):
- PNNL-SA-124233
Journal ID: ISSN 1754-6834; PII: 735
- Grant/Contract Number:
- AC05-76RL01830; EE0006112
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Biotechnology for Biofuels
- Additional Journal Information:
- Journal Volume: 10; Journal Issue: 1; Journal ID: ISSN 1754-6834
- Publisher:
- BioMed Central
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; Alkaline lignin; Bacillus ligniniphilus L1; GC–MS; Proteomics
Citation Formats
Zhu, Daochen, Zhang, Peipei, Xie, Changxiao, Zhang, Weimin, Sun, Jianzhong, Qian, Wei-Jun, and Yang, Bin. Biodegradation of alkaline lignin by Bacillus ligniniphilus L1. United States: N. p., 2017.
Web. doi:10.1186/s13068-017-0735-y.
Zhu, Daochen, Zhang, Peipei, Xie, Changxiao, Zhang, Weimin, Sun, Jianzhong, Qian, Wei-Jun, & Yang, Bin. Biodegradation of alkaline lignin by Bacillus ligniniphilus L1. United States. https://doi.org/10.1186/s13068-017-0735-y
Zhu, Daochen, Zhang, Peipei, Xie, Changxiao, Zhang, Weimin, Sun, Jianzhong, Qian, Wei-Jun, and Yang, Bin. Tue .
"Biodegradation of alkaline lignin by Bacillus ligniniphilus L1". United States. https://doi.org/10.1186/s13068-017-0735-y. https://www.osti.gov/servlets/purl/1357047.
@article{osti_1357047,
title = {Biodegradation of alkaline lignin by Bacillus ligniniphilus L1},
author = {Zhu, Daochen and Zhang, Peipei and Xie, Changxiao and Zhang, Weimin and Sun, Jianzhong and Qian, Wei-Jun and Yang, Bin},
abstractNote = {Lignin is the most abundant aromatic biopolymer in the biosphere and it comprises up to 30% of plant biomass. Although lignin is the most recalcitrant component of the plant cell wall, still there are microorganisms able to decompose it or degrade it. Fungi are recognized as the most widely used microbes for lignin degradation. However, bacteria have also been known to be able to utilize lignin as a carbon or energy source. Bacillus ligniniphilus L1 was selected in this study due to its capability to utilize alkaline lignin as a single carbon or energy source and its excellent ability to survive in extreme environments. To investigate the aromatic metabolites of strain L1 decomposing alkaline lignin, GC–MS analysis was performed and fifteen single phenol ring aromatic compounds were identified. The dominant absorption peak included phenylacetic acid, 4-hydroxy-benzoicacid, and vanillic acid with the highest proportion of metabolites resulting in 42%. Comparison proteomic analysis was carried out for further study showed that approximately 1447 kinds of proteins were produced, 141 of which were at least twofold up-regulated with alkaline lignin as the single carbon source. The up-regulated proteins contents different categories in the biological functions of protein including lignin degradation, ABC transport system, environmental response factors, protein synthesis, assembly, etc. In conclusion, GC–MS analysis showed that alkaline lignin degradation of strain L1 produced 15 kinds of aromatic compounds. Comparison proteomic data and metabolic analysis showed that to ensure the degradation of lignin and growth of strain L1, multiple aspects of cells metabolism including transporter, environmental response factors, and protein synthesis were enhanced. Based on genome and proteomic analysis, at least four kinds of lignin degradation pathway might be present in strain L1, including a Gentisate pathway, the benzoic acid pathway and the β-ketoadipate pathway. The study provides an important basis for lignin degradation by bacteria.},
doi = {10.1186/s13068-017-0735-y},
journal = {Biotechnology for Biofuels},
number = 1,
volume = 10,
place = {United States},
year = {Tue Feb 21 00:00:00 EST 2017},
month = {Tue Feb 21 00:00:00 EST 2017}
}
Web of Science
Works referenced in this record:
Identification of Manganese Superoxide Dismutase from Sphingobacterium sp. T2 as a Novel Bacterial Enzyme for Lignin Oxidation
journal, July 2015
- Rashid, Goran M. M.; Taylor, Charles R.; Liu, Yangqingxue
- ACS Chemical Biology, Vol. 10, Issue 10
Flagella and bacterial pathogenicity: Flagella and bacterial pathogenicity
journal, February 2012
- Duan, Qiangde; Zhou, Mingxu; Zhu, Liqian
- Journal of Basic Microbiology, Vol. 53, Issue 1
Optimization for peptide sample preparation for urine peptidomics
journal, January 2014
- Sigdel, Tara K.; Nicora, Carrie D.; Hsieh, Szu-Chuan
- Clinical Proteomics, Vol. 11, Issue 1
Genes associated with lignin degradation in the polyphagous white-rot pathogen Heterobasidion irregulare show substrate-specific regulation
journal, July 2013
- Yakovlev, Igor A.; Hietala, Ari M.; Courty, Pierre-Emmanuel
- Fungal Genetics and Biology, Vol. 56
Identification of low molecular weight aromatic compounds by gas chromatography–mass spectrometry (GC–MS) from kraft lignin degradation by three Bacillus sp.
journal, June 2007
- Raj, Abhay; Krishna Reddy, M. M.; Chandra, Ram
- International Biodeterioration & Biodegradation, Vol. 59, Issue 4
Depolymerization and decolorization of kraft lignin by bacterium Comamonas sp. B-9
journal, August 2013
- Chai, Li-yuan; Chen, Yue-hui; Tang, Chong-jian
- Applied Microbiology and Biotechnology, Vol. 98, Issue 4
Decolorization of kraft pulp bleaching effluent by a newly isolated fungus,Geotrichum candidum Dec 1
journal, October 2002
- Shintani, Noboru; Sugano, Yasushi; Shoda, Makoto
- Journal of Wood Science, Vol. 48, Issue 5
Lignin oxidation and depolymerisation in ionic liquids
journal, January 2016
- Prado, R.; Brandt, A.; Erdocia, X.
- Green Chemistry, Vol. 18, Issue 3
Gene clusters involved in anaerobic benzoate degradation of Geobacter metallireducens: Benzoate metabolism in G. metallireducens
journal, October 2005
- Wischgoll, Simon; Heintz, Dimitri; Peters, Franziska
- Molecular Microbiology, Vol. 58, Issue 5
High activity catechol 1,2-dioxygenase from Stenotrophomonas maltophilia strain KB2 as a useful tool in cis,cis-muconic acid production
journal, March 2013
- Guzik, Urszula; Hupert-Kocurek, Katarzyna; Sitnik, Małgorzata
- Antonie van Leeuwenhoek, Vol. 103, Issue 6
A cloned Bacillus halodurans multicopper oxidase exhibiting alkaline laccase activity
journal, February 2004
- Ruijssenaars, H. J.; Hartmans, S.
- Applied Microbiology and Biotechnology, Vol. 65, Issue 2
Catalytic Lignin Valorization Process for the Production of Aromatic Chemicals and Hydrogen
journal, June 2012
- Zakzeski, Joseph; Jongerius, Anna L.; Bruijnincx, Pieter C. A.
- ChemSusChem, Vol. 5, Issue 8
Identification and Characterization of a Multifunctional Dye Peroxidase from a Lignin-Reactive Bacterium
journal, September 2012
- Brown, Margaret E.; Barros, Tiago; Chang, Michelle C. Y.
- ACS Chemical Biology, Vol. 7, Issue 12
Discovery and Characterization of Heme Enzymes from Unsequenced Bacteria: Application to Microbial Lignin Degradation
journal, November 2011
- Brown, Margaret E.; Walker, Mark C.; Nakashige, Toshiki G.
- Journal of the American Chemical Society, Vol. 133, Issue 45
Enzymatic "Combustion": The Microbial Degradation of Lignin
journal, October 1987
- Kirk, T. K.; Farrell, R. L.
- Annual Review of Microbiology, Vol. 41, Issue 1, p. 465-501
Detecting differential protein expression in large-scale population proteomics
journal, June 2014
- Ryu, So Young; Qian, Wei-Jun; Camp, David G.
- Bioinformatics, Vol. 30, Issue 19
Bacillus ligniniphilus sp. nov., an alkaliphilic and halotolerant bacterium isolated from sediments of the South China Sea
journal, February 2014
- Zhu, D.; Tanabe, S. -H.; Xie, C.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 5
Biogenesis and functions of bacterial S-layers
journal, February 2014
- Fagan, Robert P.; Fairweather, Neil F.
- Nature Reviews Microbiology, Vol. 12, Issue 3
Lignin plays a negative role in the biochemical process for producing lignocellulosic biofuels
journal, June 2014
- Zeng, Yining; Zhao, Shuai; Yang, Shihui
- Current Opinion in Biotechnology, Vol. 27
Degradation of dimeric lignin model compounds by aerobic bacteria isolated from the hindgut of xylophagous termites
journal, January 1997
- Kuhnigk, Thomas; König, Helmut
- Journal of Basic Microbiology, Vol. 37, Issue 3
Structural Basis of Substrate Conversion in a New Aromatic Peroxygenase: CYTOCHROME P450 FUNCTIONALITY WITH BENEFITS
journal, October 2013
- Piontek, Klaus; Strittmatter, Eric; Ullrich, René
- Journal of Biological Chemistry, Vol. 288, Issue 48
Improvement in efficiency of lignin degradation by Fenton reaction using synergistic catalytic action
journal, December 2015
- Seesuriyachan, Phisit; Kuntiya, Ampin; Kawee-ai, Arthitaya
- Ecological Engineering, Vol. 85
Comamonas testosteroni uses a chemoreceptor for tricarboxylic acid cycle intermediates to trigger chemotactic responses towards aromatic compounds : New mechanism for chemotaxis towards aromatic compounds
journal, October 2013
- Ni, Bin; Huang, Zhou; Fan, Zheng
- Molecular Microbiology, Vol. 90, Issue 4
Evidence supporting dissimilatory and assimilatory lignin degradation in Enterobacter lignolyticus SCF1
journal, January 2013
- DeAngelis, Kristen M.; Sharma, Deepak; Varney, Rebecca
- Frontiers in Microbiology, Vol. 4
Fungal aryl-alcohol oxidase: a peroxide-producing flavoenzyme involved in lignin degradation
journal, January 2012
- Hernández-Ortega, Aitor; Ferreira, Patricia; Martínez, Angel T.
- Applied Microbiology and Biotechnology, Vol. 93, Issue 4
Roles of Small Laccases from Streptomyces in Lignin Degradation
journal, June 2014
- Majumdar, Sudipta; Lukk, Tiit; Solbiati, Jose O.
- Biochemistry, Vol. 53, Issue 24
Proteomic identification and quantification of S-glutathionylation in mouse macrophages using resin-assisted enrichment and isobaric labeling
journal, February 2014
- Su, Dian; Gaffrey, Matthew J.; Guo, Jia
- Free Radical Biology and Medicine, Vol. 67
Vanillin Production from Lignin and Its Use as a Renewable Chemical
journal, December 2015
- Fache, Maxence; Boutevin, Bernard; Caillol, Sylvain
- ACS Sustainable Chemistry & Engineering, Vol. 4, Issue 1
The emerging role for bacteria in lignin degradation and bio-product formation
journal, June 2011
- Bugg, Timothy DH; Ahmad, Mark; Hardiman, Elizabeth M.
- Current Opinion in Biotechnology, Vol. 22, Issue 3
Cloning and characterization of a new laccase from Bacillus licheniformis catalyzing dimerization of phenolic acids
journal, March 2008
- Koschorreck, Katja; Richter, Sven M.; Ene, Augusta B.
- Applied Microbiology and Biotechnology, Vol. 79, Issue 2
Development of novel assays for lignin degradation: comparative analysis of bacterial and fungal lignin degraders
journal, January 2010
- Ahmad, Mark; Taylor, Charles R.; Pink, David
- Molecular BioSystems, Vol. 6, Issue 5
The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes
journal, June 2012
- Floudas, Dimitrios; Binder, Manfred; Riley, Robert
- Science, Vol. 336, Issue 6089
Genetic and biochemical characterization of a 4-hydroxybenzoate hydroxylase from Corynebacterium glutamicum
journal, December 2007
- Huang, Yan; Zhao, Ke-xin; Shen, Xi-Hui
- Applied Microbiology and Biotechnology, Vol. 78, Issue 1
The Catalytic Valorization of Lignin for the Production of Renewable Chemicals
journal, June 2010
- Zakzeski, Joseph; Bruijnincx, Pieter C. A.; Jongerius, Anna L.
- Chemical Reviews, Vol. 110, Issue 6, p. 3552-3599
Breaking Down Lignin to High-Value Chemicals: The Conversion of Lignocellulose to Vanillin in a Gene Deletion Mutant of Rhodococcus jostii RHA1
journal, August 2013
- Sainsbury, Paul D.; Hardiman, Elizabeth M.; Ahmad, Mark
- ACS Chemical Biology, Vol. 8, Issue 10
Probability-Based Evaluation of Peptide and Protein Identifications from Tandem Mass Spectrometry and SEQUEST Analysis: The Human Proteome
journal, February 2005
- Qian, Wei-Jun; Liu, Tao; Monroe, Matthew E.
- Journal of Proteome Research, Vol. 4, Issue 1
Biotechnological opportunities with the β-ketoadipate pathway
journal, December 2012
- Wells, Tyrone; Ragauskas, Arthur J.
- Trends in Biotechnology, Vol. 30, Issue 12
Effect of oxidized leachate on degradation of lignin by sulfate-reducing bacteria
journal, May 2009
- Kim, Jong-Ho; Kim, Moonil; Bae, Wooken
- Waste Management & Research, Vol. 27, Issue 5
Vanillin oligomerization as a model of side reactions in lignin fragmentation
journal, July 2012
- Constant, Sandra; Robitzer, Mike; Quignard, Françoise
- Catalysis Today, Vol. 189, Issue 1, p. 123-128
Stimulation of Mn peroxidase activity: a possible role for oxalate in lignin biodegradation.
journal, February 1993
- Kuan, I. C.; Tien, M.
- Proceedings of the National Academy of Sciences, Vol. 90, Issue 4
Structure-based Insights into the Catalytic Power and Conformational Dexterity of Peroxiredoxins
journal, August 2011
- Hall, Andrea; Nelson, Kimberly; Poole, Leslie B.
- Antioxidants & Redox Signaling, Vol. 15, Issue 3
Photodegradation of lignin from black liquor using a UV/TiO2 system
journal, January 2003
- Ksibi, M.
- Journal of Photochemistry and Photobiology A: Chemistry, Vol. 154, Issue 2-3
Bioconversion of lignin model compounds with oleaginous Rhodococci
journal, December 2011
- Kosa, Matyas; Ragauskas, Arthur J.
- Applied Microbiology and Biotechnology, Vol. 93, Issue 2
Crystal structure of a ferredoxin reductase for the CYP199A2 system from Rhodopseudomonas palustris
journal, December 2009
- Xu, Feng; Bell, Stephen G.; Peng, Ying
- Proteins: Structure, Function, and Bioinformatics, Vol. 77, Issue 4
Lignin degradation by selected fungal species
journal, June 2013
- Knežević, Aleksandar; Milovanović, Ivan; Stajić, Mirjana
- Bioresource Technology, Vol. 138
Lignin Solubilization and Aqueous Phase Reforming for the Production of Aromatic Chemicals and Hydrogen
journal, January 2011
- Zakzeski, Joseph; Weckhuysen, Bert M.
- ChemSusChem, Vol. 4, Issue 3
2-Cys peroxiredoxin function in intracellular signal transduction: therapeutic implications
journal, December 2005
- Kang, Sang Won; Rhee, Sue Goo; Chang, Tong-Shin
- Trends in Molecular Medicine, Vol. 11, Issue 12
Crystal structure of NADH-dependent ferredoxin reductase component in biphenyl dioxygenase
journal, December 2000
- Senda, Toshiya; Yamada, Takahiro; Sakurai, Nobuyuki
- Journal of Molecular Biology, Vol. 304, Issue 3
The Biological Degradation of Lignin1
journal, January 1953
- Day, William C.; Gottlieb, Sidney; Pelczar, Michael J.
- Applied Microbiology, Vol. 1, Issue 2
Comparative mitochondrial genome analysis reveals intron dynamics and gene rearrangements in two Trametes species
journal, January 2021
- Chen, Cheng; Li, Qiang; Fu, Rongtao
- Scientific Reports, Vol. 11, Issue 1
Lignin Solubilization and Aqueous Phase Reforming for the Production of Aromatic Chemicals and Hydrogen
journal, January 2011
- Zakzeski, Joseph; Weckhuysen, Bert M.
- ChemSusChem, Vol. 4, Issue 3
Catalytic Lignin Valorization Process for the Production of Aromatic Chemicals and Hydrogen
journal, June 2012
- Zakzeski, Joseph; Jongerius, Anna L.; Bruijnincx, Pieter C. A.
- ChemSusChem, Vol. 5, Issue 8
Degradation of dimeric lignin model compounds by aerobic bacteria isolated from the hindgut of xylophagous termites
journal, January 1997
- Kuhnigk, Thomas; König, Helmut
- Journal of Basic Microbiology, Vol. 37, Issue 3
Crystal structure of NADH-dependent ferredoxin reductase component in biphenyl dioxygenase
journal, December 2000
- Senda, Toshiya; Yamada, Takahiro; Sakurai, Nobuyuki
- Journal of Molecular Biology, Vol. 304, Issue 3
Genetic and biochemical characterization of a 4-hydroxybenzoate hydroxylase from Corynebacterium glutamicum
journal, December 2007
- Huang, Yan; Zhao, Ke-xin; Shen, Xi-Hui
- Applied Microbiology and Biotechnology, Vol. 78, Issue 1
Bioconversion of lignin model compounds with oleaginous Rhodococci
journal, December 2011
- Kosa, Matyas; Ragauskas, Arthur J.
- Applied Microbiology and Biotechnology, Vol. 93, Issue 2
Fungal aryl-alcohol oxidase: a peroxide-producing flavoenzyme involved in lignin degradation
journal, January 2012
- Hernández-Ortega, Aitor; Ferreira, Patricia; Martínez, Angel T.
- Applied Microbiology and Biotechnology, Vol. 93, Issue 4
High activity catechol 1,2-dioxygenase from Stenotrophomonas maltophilia strain KB2 as a useful tool in cis,cis-muconic acid production
journal, March 2013
- Guzik, Urszula; Hupert-Kocurek, Katarzyna; Sitnik, Małgorzata
- Antonie van Leeuwenhoek, Vol. 103, Issue 6
Lignin degradation by selected fungal species
journal, June 2013
- Knežević, Aleksandar; Milovanović, Ivan; Stajić, Mirjana
- Bioresource Technology, Vol. 138
Vanillin oligomerization as a model of side reactions in lignin fragmentation
journal, July 2012
- Constant, Sandra; Robitzer, Mike; Quignard, Françoise
- Catalysis Today, Vol. 189, Issue 1, p. 123-128
The emerging role for bacteria in lignin degradation and bio-product formation
journal, June 2011
- Bugg, Timothy DH; Ahmad, Mark; Hardiman, Elizabeth M.
- Current Opinion in Biotechnology, Vol. 22, Issue 3
Improvement in efficiency of lignin degradation by Fenton reaction using synergistic catalytic action
journal, December 2015
- Seesuriyachan, Phisit; Kuntiya, Ampin; Kawee-ai, Arthitaya
- Ecological Engineering, Vol. 85
Proteomic identification and quantification of S-glutathionylation in mouse macrophages using resin-assisted enrichment and isobaric labeling
journal, February 2014
- Su, Dian; Gaffrey, Matthew J.; Guo, Jia
- Free Radical Biology and Medicine, Vol. 67
Identification of low molecular weight aromatic compounds by gas chromatography–mass spectrometry (GC–MS) from kraft lignin degradation by three Bacillus sp.
journal, June 2007
- Raj, Abhay; Krishna Reddy, M. M.; Chandra, Ram
- International Biodeterioration & Biodegradation, Vol. 59, Issue 4
2-Cys peroxiredoxin function in intracellular signal transduction: therapeutic implications
journal, December 2005
- Kang, Sang Won; Rhee, Sue Goo; Chang, Tong-Shin
- Trends in Molecular Medicine, Vol. 11, Issue 12
Identification of Manganese Superoxide Dismutase from Sphingobacterium sp. T2 as a Novel Bacterial Enzyme for Lignin Oxidation
journal, July 2015
- Rashid, Goran M. M.; Taylor, Charles R.; Liu, Yangqingxue
- ACS Chemical Biology, Vol. 10, Issue 10
Discovery and Characterization of Heme Enzymes from Unsequenced Bacteria: Application to Microbial Lignin Degradation
journal, November 2011
- Brown, Margaret E.; Walker, Mark C.; Nakashige, Toshiki G.
- Journal of the American Chemical Society, Vol. 133, Issue 45
Probability-Based Evaluation of Peptide and Protein Identifications from Tandem Mass Spectrometry and SEQUEST Analysis: The Human Proteome
journal, February 2005
- Qian, Wei-Jun; Liu, Tao; Monroe, Matthew E.
- Journal of Proteome Research, Vol. 4, Issue 1
Biogenesis and functions of bacterial S-layers
journal, February 2014
- Fagan, Robert P.; Fairweather, Neil F.
- Nature Reviews Microbiology, Vol. 12, Issue 3
Development of novel assays for lignin degradation: comparative analysis of bacterial and fungal lignin degraders
journal, January 2010
- Ahmad, Mark; Taylor, Charles R.; Pink, David
- Molecular BioSystems, Vol. 6, Issue 5
Stimulation of Mn peroxidase activity: a possible role for oxalate in lignin biodegradation.
journal, February 1993
- Kuan, I. C.; Tien, M.
- Proceedings of the National Academy of Sciences, Vol. 90, Issue 4
Global Analysis of the Regulon of the Transcriptional Repressor LexA, a Key Component of SOS Response in Mycobacterium tuberculosis
journal, April 2012
- Smollett, Katherine L.; Smith, Kimberley M.; Kahramanoglou, Christina
- Journal of Biological Chemistry, Vol. 287, Issue 26
Structure-based Insights into the Catalytic Power and Conformational Dexterity of Peroxiredoxins
journal, August 2011
- Hall, Andrea; Nelson, Kimberly; Poole, Leslie B.
- Antioxidants & Redox Signaling, Vol. 15, Issue 3
Bacillus ligniniphilus sp. nov., an alkaliphilic and halotolerant bacterium isolated from sediments of the South China Sea
journal, February 2014
- Zhu, D.; Tanabe, S. -H.; Xie, C.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 5
Identification of Three Alcohol Dehydrogenase Genes Involved in the Stereospecific Catabolism of Arylglycerol- -Aryl Ether by Sphingobium sp. Strain SYK-6
journal, June 2009
- Sato, Y.; Moriuchi, H.; Hishiyama, S.
- Applied and Environmental Microbiology, Vol. 75, Issue 16
Differential Expression in Phanerochaete chrysosporium of Membrane-Associated Proteins Relevant to Lignin Degradation
journal, October 2008
- Shary, S.; Kapich, A. N.; Panisko, E. A.
- Applied and Environmental Microbiology, Vol. 74, Issue 23
Requirement for a Growth Substrate During Lignin Decomposition by Two Wood-Rotting Fungi
journal, January 1976
- Kirk, T. Kent; Connors, W. J.; Zeikus, J. Gregory
- Applied and Environmental Microbiology, Vol. 32, Issue 1
Biotransformation of substituted benzoates to the corresponding cis-diols by an engineered strain of Pseudomonas oleovorans producing the TOL plasmid-specified enzyme toluate-1,2-dioxygenase.
journal, January 1990
- Wubbolts, M. G.; Timmis, K. N.
- Applied and Environmental Microbiology, Vol. 56, Issue 2
Solubilization and Mineralization of Lignin by White Rot Fungi
journal, January 1992
- Boyle, C. David; Kropp, Bradley R.; Reid, Ian D.
- Applied and Environmental Microbiology, Vol. 58, Issue 10
Decolorization and Detoxification of Extraction-Stage Effluent from Chlorine Bleaching of Kraft Pulp by Rhizopus oryzae
journal, March 1999
- Nagarathnamma, R.; Bajpai, Pratima
- Applied and Environmental Microbiology, Vol. 65, Issue 3
The Biological Degradation of Lignin
journal, March 1953
- Day, William C.; Gottlieb, Sidney; Pelczar, Michael J.
- Applied Microbiology, Vol. 1, Issue 2
CotA of Bacillus subtilis Is a Copper-Dependent Laccase
journal, September 2001
- Hullo, M. -F.; Moszer, I.; Danchin, A.
- Journal of Bacteriology, Vol. 183, Issue 18
Optimization for peptide sample preparation for urine peptidomics
journal, January 2014
- Sigdel, Tara K.; Nicora, Carrie D.; Hsieh, Szu-Chuan
- Clinical Proteomics, Vol. 11, Issue 1
P450 monooxygenases (P450ome) of the model white rot fungus Phanerochaete chrysosporium
journal, March 2012
- Syed, Khajamohiddin; Yadav, Jagjit S.
- Critical Reviews in Microbiology, Vol. 38, Issue 4
Evidence supporting dissimilatory and assimilatory lignin degradation in Enterobacter lignolyticus SCF1
journal, January 2013
- DeAngelis, Kristen M.; Sharma, Deepak; Varney, Rebecca
- Frontiers in Microbiology, Vol. 4
Connecting lignin-degradation pathway with pre-treatment inhibitor sensitivity of Cupriavidus necator
journal, May 2014
- Wang, Wei; Yang, Shihui; Hunsinger, Glendon B.
- Frontiers in Microbiology, Vol. 5
Works referencing / citing this record:
Biotransformation of lignin: Mechanisms, applications and future work
journal, October 2019
- Li, Xiang; Zheng, Yi
- Biotechnology Progress, Vol. 36, Issue 1
Mapping the diversity of microbial lignin catabolism: experiences from the eLignin database
journal, April 2019
- Brink, Daniel P.; Ravi, Krithika; Lidén, Gunnar
- Applied Microbiology and Biotechnology, Vol. 103, Issue 10
Biodegradation of lignin by Pseudomonas sp. Q18 and the characterization of a novel bacterial DyP-type peroxidase
journal, July 2018
- Yang, Chenxian; Yue, Fangfang; Cui, Yanlong
- Journal of Industrial Microbiology & Biotechnology, Vol. 45, Issue 10
Potential of Bacillus subtilis from marine environment to degrade aromatic hydrocarbons
journal, July 2019
- Velupillaimani, Daisy; Muthaiyan, Arunachalam
- Environmental Sustainability, Vol. 2, Issue 4
Lignin Valorization: Two Hybrid Biochemical Routes for the Conversion of Polymeric Lignin into Value-added Chemicals
journal, August 2017
- Wu, Weihua; Dutta, Tanmoy; Varman, Arul M.
- Scientific Reports, Vol. 7, Issue 1
Whole metagenome sequencing reveals links between mosquito microbiota and insecticide resistance in malaria vectors
journal, February 2018
- Dada, Nsa; Sheth, Mili; Liebman, Kelly
- Scientific Reports, Vol. 8, Issue 1
Genomic and proteomic analysis of lignin degrading and polyhydroxyalkanoate accumulating β-proteobacterium Pandoraea sp. ISTKB
journal, June 2018
- Kumar, Madan; Verma, Sandhya; Gazara, Rajesh Kumar
- Biotechnology for Biofuels, Vol. 11, Issue 1
Genomics and biochemistry investigation on the metabolic pathway of milled wood and alkali lignin-derived aromatic metabolites of Comamonas serinivorans SP-35
journal, December 2018
- Zhu, Daochen; Si, Haibing; Zhang, Peipei
- Biotechnology for Biofuels, Vol. 11, Issue 1
Recent advances in lignin valorization with bacterial cultures: microorganisms, metabolic pathways, and bio-products
journal, February 2019
- Xu, Zhaoxian; Lei, Peng; Zhai, Rui
- Biotechnology for Biofuels, Vol. 12, Issue 1
Genomic analysis of Burkholderia sp. ISTR5 for biofunneling of lignin-derived compounds
journal, November 2019
- Morya, Raj; Kumar, Madan; Singh, Shashi Shekhar
- Biotechnology for Biofuels, Vol. 12, Issue 1
Lignin Valorization: Two Hybrid Biochemical Routes for the Conversion of Polymeric Lignin into Value-added Chemicals
journal, August 2017
- Wu, Weihua; Dutta, Tanmoy; Varman, Arul M.
- Scientific Reports, Vol. 7, Issue 1
Whole metagenome sequencing reveals links between mosquito microbiota and insecticide resistance in malaria vectors
journal, February 2018
- Dada, Nsa; Sheth, Mili; Liebman, Kelly
- Scientific Reports, Vol. 8, Issue 1
Erratum for Ho et al., “Complete Genome Sequence of Acinetobacter calcoaceticus CA16, a Bacterium Capable of Degrading Diesel and Lignin”
journal, August 2017
- Ho, Margaret T.; Weselowski, Brian; Yuan, Ze-Chun
- Genome Announcements, Vol. 5, Issue 31
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journal, December 2018
- Zhu, Daochen; Si, Haibing; Zhang, Peipei
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journal, September 2019
- Lee, Siseon; Kang, Minsik; Bae, Jung-Hoon
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