DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Chemical Speciation and Bond Lengths of Organic Solutes by Core-Level Spectroscopy: pH and Solvent Influence on p -Aminobenzoic Acid

Abstract

Through X-ray absorption and emission spectroscopies, the chemical, electronic and structural properties of organic species in solution can be observed. Near-edge X-ray absorption fine structure (NEXAFS) and resonant inelastic X-ray scattering (RIXS) measurements at the nitrogen K-edge of para-aminobenzoic acid reveal both pH- and solvent-dependent variations in the ionisation potential (IP), 1s→π* resonances and HOMO–LUMO gap. These changes unequivocally identify the chemical species (neutral, cationic or anionic) present in solution. It is shown how this incisive chemical state sensitivity is further enhanced by the possibility of quantitative bond length determination, based on the analysis of chemical shifts in IPs and σ* shape resonances in the NEXAFS spectra. Finally, this provides experimental access to detecting even minor variations in the molecular structure of solutes in solution, thereby providing an avenue to examining computational predictions of solute properties and solute–solvent interactions.

Authors:
 [1];  [1];  [2];  [2];  [2];  [3];  [4]
  1. Univ. of Manchester (United Kingdom)
  2. Helmholtz-Zentrum Berlin (HZB), (Germany). German Research Centre for Materials and Energy
  3. Helmholtz-Zentrum Berlin (HZB), (Germany). German Research Centre for Materials and Energy; Freie Univ. Berlin, Berlin (Germany)
  4. Univ. of Manchester (United Kingdom); Univ. of Leeds, Leeds (United Kingdom)
Publication Date:
Research Org.:
Univ. of Manchester (United Kingdom)
Sponsoring Org.:
USDOE Office of Science (SC), Basic Energy Sciences (BES); European Research Council (ERC)
OSTI Identifier:
1343097
Grant/Contract Number:  
AC02-98CH10886; EP/1013563/1; 312284; 279344
Resource Type:
Accepted Manuscript
Journal Name:
Chemistry - A European Journal
Additional Journal Information:
Journal Volume: 21; Journal Issue: 19; Journal ID: ISSN 0947-6539
Publisher:
ChemPubSoc Europe
Country of Publication:
United States
Language:
English
Subject:
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY; ionization potentials; liquids; X-ray scattering; speciation; X-ray absorption spectroscopy

Citation Formats

Stevens, Joanna S., Gainar, Adrian, Suljoti, Edlira, Xiao, Jie, Golnak, Ronny, Aziz, Emad F., and Schroeder, Sven L. M. Chemical Speciation and Bond Lengths of Organic Solutes by Core-Level Spectroscopy: pH and Solvent Influence on p -Aminobenzoic Acid. United States: N. p., 2015. Web. doi:10.1002/chem.201405635.
Stevens, Joanna S., Gainar, Adrian, Suljoti, Edlira, Xiao, Jie, Golnak, Ronny, Aziz, Emad F., & Schroeder, Sven L. M. Chemical Speciation and Bond Lengths of Organic Solutes by Core-Level Spectroscopy: pH and Solvent Influence on p -Aminobenzoic Acid. United States. https://doi.org/10.1002/chem.201405635
Stevens, Joanna S., Gainar, Adrian, Suljoti, Edlira, Xiao, Jie, Golnak, Ronny, Aziz, Emad F., and Schroeder, Sven L. M. Wed . "Chemical Speciation and Bond Lengths of Organic Solutes by Core-Level Spectroscopy: pH and Solvent Influence on p -Aminobenzoic Acid". United States. https://doi.org/10.1002/chem.201405635. https://www.osti.gov/servlets/purl/1343097.
@article{osti_1343097,
title = {Chemical Speciation and Bond Lengths of Organic Solutes by Core-Level Spectroscopy: pH and Solvent Influence on p -Aminobenzoic Acid},
author = {Stevens, Joanna S. and Gainar, Adrian and Suljoti, Edlira and Xiao, Jie and Golnak, Ronny and Aziz, Emad F. and Schroeder, Sven L. M.},
abstractNote = {Through X-ray absorption and emission spectroscopies, the chemical, electronic and structural properties of organic species in solution can be observed. Near-edge X-ray absorption fine structure (NEXAFS) and resonant inelastic X-ray scattering (RIXS) measurements at the nitrogen K-edge of para-aminobenzoic acid reveal both pH- and solvent-dependent variations in the ionisation potential (IP), 1s→π* resonances and HOMO–LUMO gap. These changes unequivocally identify the chemical species (neutral, cationic or anionic) present in solution. It is shown how this incisive chemical state sensitivity is further enhanced by the possibility of quantitative bond length determination, based on the analysis of chemical shifts in IPs and σ* shape resonances in the NEXAFS spectra. Finally, this provides experimental access to detecting even minor variations in the molecular structure of solutes in solution, thereby providing an avenue to examining computational predictions of solute properties and solute–solvent interactions.},
doi = {10.1002/chem.201405635},
journal = {Chemistry - A European Journal},
number = 19,
volume = 21,
place = {United States},
year = {Wed Mar 18 00:00:00 EDT 2015},
month = {Wed Mar 18 00:00:00 EDT 2015}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record

Citation Metrics:
Cited by: 15 works
Citation information provided by
Web of Science

Save / Share:

Works referenced in this record:

Textbook of Medical Biochemistry
book, January 2012


Nucleation of Organic Crystals-A Molecular Perspective
journal, January 2013

  • Davey, Roger J.; Schroeder, Sven L. M.; ter Horst, Joop H.
  • Angewandte Chemie International Edition, Vol. 52, Issue 8
  • DOI: 10.1002/anie.201204824

Keimbildung organischer Kristalle aus molekularer Sichtweise
journal, January 2013

  • Davey, Roger J.; Schroeder, Sven L. M.; ter Horst, Joop H.
  • Angewandte Chemie, Vol. 125, Issue 8
  • DOI: 10.1002/ange.201204824

Crystal engineering – nucleation, the key step
journal, January 2002

  • Davey, R. J.; Allen, K.; Blagden, N.
  • CrystEngComm, Vol. 4, Issue 47
  • DOI: 10.1039/B203521A

Toward Stereochemical Control, Monitoring, and Understanding of Crystal Nucleation
journal, March 2003

  • Weissbuch, Isabelle; Lahav, Meir; Leiserowitz, Leslie
  • Crystal Growth & Design, Vol. 3, Issue 2
  • DOI: 10.1021/cg0200560

Prenucleation clusters and non-classical nucleation
journal, December 2011


Uncovering Molecular Processes in Crystal Nucleation and Growth by Using Molecular Simulation
journal, January 2011

  • Anwar, Jamshed; Zahn, Dirk
  • Angewandte Chemie International Edition, Vol. 50, Issue 9
  • DOI: 10.1002/anie.201000463

Atomistisches Verständnis der Keimbildung und des Kristallwachstums durch molekulare Simulationen
journal, January 2011


Pre-nucleation clusters as solute precursors in crystallisation
journal, January 2014

  • Gebauer, Denis; Kellermeier, Matthias; Gale, Julian D.
  • Chem. Soc. Rev., Vol. 43, Issue 7
  • DOI: 10.1039/C3CS60451A

In-Situ Monitoring of the Formation of Crystalline Solids
journal, February 2011

  • Pienack, Nicole; Bensch, Wolfgang
  • Angewandte Chemie International Edition, Vol. 50, Issue 9
  • DOI: 10.1002/anie.201001180

In-situ-Verfolgung der Bildung kristalliner Feststoffe
journal, February 2011


Proton transfer and hydrogen bonding in the organic solid state: a combined XRD/XPS/ssNMR study of 17 organic acid–base complexes
journal, January 2014

  • Stevens, Joanna S.; Byard, Stephen J.; Seaton, Colin C.
  • Phys. Chem. Chem. Phys., Vol. 16, Issue 3
  • DOI: 10.1039/C3CP53907E

Crystallography Aided by Atomic Core-Level Binding Energies: Proton Transfer versus Hydrogen Bonding in Organic Crystal Structures
journal, September 2011

  • Stevens, Joanna S.; Byard, Stephen J.; Seaton, Colin C.
  • Angewandte Chemie International Edition, Vol. 50, Issue 42
  • DOI: 10.1002/anie.201103981

Crystallography Aided by Atomic Core-Level Binding Energies: Proton Transfer versus Hydrogen Bonding in Organic Crystal Structures
journal, September 2011

  • Stevens, Joanna S.; Byard, Stephen J.; Seaton, Colin C.
  • Angewandte Chemie, Vol. 123, Issue 42
  • DOI: 10.1002/ange.201103981

pH-Induced Protonation of Lysine in Aqueous Solution Causes Chemical Shifts in X-ray Photoelectron Spectroscopy
journal, November 2007

  • Nolting, Dirk; Aziz, Emad F.; Ottosson, Niklas
  • Journal of the American Chemical Society, Vol. 129, Issue 45
  • DOI: 10.1021/ja072971l

Pseudoequivalent Nitrogen Atoms in Aqueous Imidazole Distinguished by Chemical Shifts in Photoelectron Spectroscopy
journal, July 2008

  • Nolting, Dirk; Ottosson, Niklas; Faubel, Manfred
  • Journal of the American Chemical Society, Vol. 130, Issue 26
  • DOI: 10.1021/ja8022384

NEXAFS Spectroscopy
book, January 1992


Nitrogen K -edge XANES – an overview of reference compounds used to identify `unknown' organic nitrogen in environmental samples
journal, October 2007

  • Leinweber, Peter; Kruse, Jens; Walley, Fran L.
  • Journal of Synchrotron Radiation, Vol. 14, Issue 6
  • DOI: 10.1107/S0909049507042513

pH Dependence of the Electronic Structure of Glycine
journal, March 2005

  • Messer, B. M.; Cappa, C. D.; Smith, J. D.
  • The Journal of Physical Chemistry B, Vol. 109, Issue 11
  • DOI: 10.1021/jp0457592

Nitrogen 1s Near-Edge X-ray Absorption Fine Structure Spectroscopy of Amino Acids:  Resolving Zwitterionic Effects
journal, November 2006

  • Otero, Edwige; Urquhart, Stephen G.
  • The Journal of Physical Chemistry A, Vol. 110, Issue 44
  • DOI: 10.1021/jp064082a

Shape resonances of oriented molecules
journal, December 2000

  • Arvanitis, D.; Haack, N.; Ceballos, G.
  • Journal of Electron Spectroscopy and Related Phenomena, Vol. 113, Issue 1
  • DOI: 10.1016/S0368-2048(00)00198-5

Shape Resonances of Oriented Molecules: ab initio Theory and Experiment on Hydrocarbon Molecules
journal, January 2000


Chemical bonding on surfaces probed by X-ray emission spectroscopy and density functional theory
journal, October 2004


Photoelectron spectroscopy of liquid water, some alcohols, and pure nonane in free micro jets
journal, June 1997

  • Faubel, Manfred; Steiner, Björn; Toennies, J. Peter
  • The Journal of Chemical Physics, Vol. 106, Issue 22
  • DOI: 10.1063/1.474034

On the Origin of the Hydrogen-Bond-Network Nature of Water: X-Ray Absorption and Emission Spectra of Water-Acetonitrile Mixtures
journal, September 2011

  • Lange, Kathrin M.; Könnecke, René; Soldatov, Mikhail
  • Angewandte Chemie International Edition, Vol. 50, Issue 45
  • DOI: 10.1002/anie.201104161

On the Origin of the Hydrogen-Bond-Network Nature of Water: X-Ray Absorption and Emission Spectra of Water-Acetonitrile Mixtures
journal, September 2011

  • Lange, Kathrin M.; Könnecke, René; Soldatov, Mikhail
  • Angewandte Chemie, Vol. 123, Issue 45
  • DOI: 10.1002/ange.201104161

High resolution X-ray emission spectroscopy of water and aqueous ions using the micro-jet technique
journal, November 2010


Soft X-ray Absorption and X-ray Photoelectron Spectroscopic Study of Tautomerism in Intramolecular Hydrogen Bonds of N -Salicylideneaniline Derivatives
journal, July 1997

  • Ito, Eisuke; Oji, Hiroshi; Araki, Tohru
  • Journal of the American Chemical Society, Vol. 119, Issue 27
  • DOI: 10.1021/ja9641362

Substituent effects. 7. Microscopic dissociation constants of 4-amino- and 4-(dimethylamino)benzoic acid
journal, February 1981

  • Van de Graaf, B.; Hoefnagel, A. J.; Wepster, B. M.
  • The Journal of Organic Chemistry, Vol. 46, Issue 4
  • DOI: 10.1021/jo00317a002

Revealing the Roles of Desolvation and Molecular Self-Assembly in Crystal Nucleation from Solution: Benzoic and p -Aminobenzoic Acids
journal, April 2014

  • Sullivan, R. A.; Davey, R. J.; Sadiq, G.
  • Crystal Growth & Design, Vol. 14, Issue 5
  • DOI: 10.1021/cg500441g

Application of the Glass Electrode to the Determination of the Thermodynamic Ionization Constants of p-Aminobenzoic Acid
journal, May 1957

  • Deviney, Marvin L.; Anderson, R. C.; Felsing, W. A.
  • Journal of the American Chemical Society, Vol. 79, Issue 10
  • DOI: 10.1021/ja01567a008

The crystal structure of p-aminobenzoic acid
journal, June 1967


Determination of intramolecular bond lengths in gas phase molecules from K shell shape resonances
journal, December 1984

  • Sette, F.; Stöhr, J.; Hitchcock, A. P.
  • The Journal of Chemical Physics, Vol. 81, Issue 11
  • DOI: 10.1063/1.447528

Structural studies of benzene derivatives. VII. The structure of p -aminobenzoic acid hydrochloride
journal, February 1980

  • Colapietro, M.; Domenicano, A.; Portalone, G.
  • Acta Crystallographica Section B Structural Crystallography and Crystal Chemistry, Vol. 36, Issue 2
  • DOI: 10.1107/S0567740880003251

Incisive Probing of Intermolecular Interactions in Molecular Crystals: Core Level Spectroscopy Combined with Density Functional Theory
journal, October 2014

  • Stevens, Joanna S.; Seabourne, Che R.; Jaye, Cherno
  • The Journal of Physical Chemistry B, Vol. 118, Issue 42
  • DOI: 10.1021/jp506983s

ATHENA , ARTEMIS , HEPHAESTUS : data analysis for X-ray absorption spectroscopy using IFEFFIT
journal, June 2005


IFEFFIT  : interactive XAFS analysis and FEFF fitting
journal, March 2001


Resonant inelastic X-ray scattering as a probe of molecular structure and electron dynamics in solutions
journal, June 2013

  • Lange, Kathrin M.; Suljoti, Edlira; Aziz, Emad F.
  • Journal of Electron Spectroscopy and Related Phenomena, Vol. 188
  • DOI: 10.1016/j.elspec.2012.09.010

Magnetosomes could be protective shields against metal stress in magnetotactic bacteria
journal, July 2020


Textbook of Medical Biochemistry
journal, January 2002


Textbook of Medical Biochemistry
book, January 2007


pH Dependence of the Electronic Structure of Glycine
journal, March 2005

  • Messer, B. M.; Cappa, C. D.; Smith, J. D.
  • The Journal of Physical Chemistry B, Vol. 109, Issue 11
  • DOI: 10.1021/jp0457592

Nitrogen 1s Near-Edge X-ray Absorption Fine Structure Spectroscopy of Amino Acids:  Resolving Zwitterionic Effects
journal, November 2006

  • Otero, Edwige; Urquhart, Stephen G.
  • The Journal of Physical Chemistry A, Vol. 110, Issue 44
  • DOI: 10.1021/jp064082a

Works referencing / citing this record:

A liquid flatjet system for solution phase soft-x-ray spectroscopy
journal, August 2015

  • Ekimova, Maria; Quevedo, Wilson; Faubel, Manfred
  • Structural Dynamics, Vol. 2, Issue 5
  • DOI: 10.1063/1.4928715

A liquid flatjet system for solution phase soft-x-ray spectroscopy
journal, August 2015

  • Ekimova, Maria; Quevedo, Wilson; Faubel, Manfred
  • Structural Dynamics, Vol. 2, Issue 5
  • DOI: 10.1063/1.4928715