DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Time course field analysis of COMT-downregulated switchgrass: Lignification, recalcitrance, and rust susceptibility

Abstract

Modifying plant cell walls by manipulating lignin biosynthesis can improve biofuel yields from lignocellulosic crops. For example, transgenic switchgrass lines with downregulated expression of caffeic acid O-methyltransferase, a lignin biosynthetic enzyme, produce up to 38% more ethanol than controls. The aim of the present study was to understand cell wall lignification over the second and third growing seasons of COMT-downregulated field-grown switchgrass. COMT gene expression, lignification, and cell wall recalcitrance were assayed for two independent transgenic lines at monthly intervals. Switchgrass rust (Puccinia emaculata) incidence was also tracked across the seasons. Trends in lignification over time differed between the 2 years. In 2012, sampling was initiated in mid-growing season on reproductive-stage plants and there was little variation in the lignin content of all lines (COMT-downregulated and control) over time. COMT-downregulated lines maintained 11-16% less lignin, 33-40% lower S/G (syringyl-to-guaiacyl) ratios, and 15-42% higher sugar release relative to controls for all time points. In 2013, sampling was initiated earlier in the season on elongation-stage plants and the lignin content of all lines steadily increased over time, while sugar release expectedly decreased. S/G ratios increased in non-transgenic control plants as biomass accumulated over the season, while remaining relatively stable across the seasonmore » in the COMT-downregulated lines. Differences in cell wall chemistry between transgenic and non-transgenic lines were not apparent until plants transitioned to reproductive growth in mid-season, after which the cell walls of COMT-downregulated plants exhibited phenotypes consistent with what was observed in 2012. There were no differences in rust damage between transgenics and controls at any time point. Finally, these results provide relevant fundamental insights into the process of lignification in a maturing field-grown biofuel feedstock with downregulated lignin biosynthesis.« less

Authors:
 [1];  [1];  [2];  [3];  [4];  [4];  [3];  [4];  [2];  [2];  [1]
  1. Univ. of Tennessee, Knoxville, TN (United States); Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
  2. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Samuel Roberts Noble Foundation, Ardmore, OK (United States)
  3. Univ. of Tennessee, Knoxville, TN (United States)
  4. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Univ. of North Texas, Denton, TX (United States)
Publication Date:
Research Org.:
National Renewable Energy Laboratory (NREL), Golden, CO (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
OSTI Identifier:
1334241
Report Number(s):
NREL/JA-5100-66619
Journal ID: ISSN 1939-1234
Grant/Contract Number:  
AC36-08GO28308
Resource Type:
Accepted Manuscript
Journal Name:
BioEnergy Research
Additional Journal Information:
Journal Volume: 9; Journal Issue: 4; Journal ID: ISSN 1939-1234
Publisher:
Springer
Country of Publication:
United States
Language:
English
Subject:
09 BIOMASS FUELS; 37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY; biomass; caffeic acid O-methyltransferase (COMT); lignin; lignocellulosic biofuel; switchgrass

Citation Formats

Baxter, Holly L., Mazarei, Mitra, Fu, Chunxiang, Cheng, Qunkang, Turner, Geoffrey B., Sykes, Robert W., Windham, Mark T., Davis, Mark F., Dixon, Richard A., Wang, Zeng -Yu, and Stewart, Jr., C. Neal. Time course field analysis of COMT-downregulated switchgrass: Lignification, recalcitrance, and rust susceptibility. United States: N. p., 2016. Web. doi:10.1007/s12155-016-9751-1.
Baxter, Holly L., Mazarei, Mitra, Fu, Chunxiang, Cheng, Qunkang, Turner, Geoffrey B., Sykes, Robert W., Windham, Mark T., Davis, Mark F., Dixon, Richard A., Wang, Zeng -Yu, & Stewart, Jr., C. Neal. Time course field analysis of COMT-downregulated switchgrass: Lignification, recalcitrance, and rust susceptibility. United States. https://doi.org/10.1007/s12155-016-9751-1
Baxter, Holly L., Mazarei, Mitra, Fu, Chunxiang, Cheng, Qunkang, Turner, Geoffrey B., Sykes, Robert W., Windham, Mark T., Davis, Mark F., Dixon, Richard A., Wang, Zeng -Yu, and Stewart, Jr., C. Neal. Wed . "Time course field analysis of COMT-downregulated switchgrass: Lignification, recalcitrance, and rust susceptibility". United States. https://doi.org/10.1007/s12155-016-9751-1. https://www.osti.gov/servlets/purl/1334241.
@article{osti_1334241,
title = {Time course field analysis of COMT-downregulated switchgrass: Lignification, recalcitrance, and rust susceptibility},
author = {Baxter, Holly L. and Mazarei, Mitra and Fu, Chunxiang and Cheng, Qunkang and Turner, Geoffrey B. and Sykes, Robert W. and Windham, Mark T. and Davis, Mark F. and Dixon, Richard A. and Wang, Zeng -Yu and Stewart, Jr., C. Neal},
abstractNote = {Modifying plant cell walls by manipulating lignin biosynthesis can improve biofuel yields from lignocellulosic crops. For example, transgenic switchgrass lines with downregulated expression of caffeic acid O-methyltransferase, a lignin biosynthetic enzyme, produce up to 38% more ethanol than controls. The aim of the present study was to understand cell wall lignification over the second and third growing seasons of COMT-downregulated field-grown switchgrass. COMT gene expression, lignification, and cell wall recalcitrance were assayed for two independent transgenic lines at monthly intervals. Switchgrass rust (Puccinia emaculata) incidence was also tracked across the seasons. Trends in lignification over time differed between the 2 years. In 2012, sampling was initiated in mid-growing season on reproductive-stage plants and there was little variation in the lignin content of all lines (COMT-downregulated and control) over time. COMT-downregulated lines maintained 11-16% less lignin, 33-40% lower S/G (syringyl-to-guaiacyl) ratios, and 15-42% higher sugar release relative to controls for all time points. In 2013, sampling was initiated earlier in the season on elongation-stage plants and the lignin content of all lines steadily increased over time, while sugar release expectedly decreased. S/G ratios increased in non-transgenic control plants as biomass accumulated over the season, while remaining relatively stable across the season in the COMT-downregulated lines. Differences in cell wall chemistry between transgenic and non-transgenic lines were not apparent until plants transitioned to reproductive growth in mid-season, after which the cell walls of COMT-downregulated plants exhibited phenotypes consistent with what was observed in 2012. There were no differences in rust damage between transgenics and controls at any time point. Finally, these results provide relevant fundamental insights into the process of lignification in a maturing field-grown biofuel feedstock with downregulated lignin biosynthesis.},
doi = {10.1007/s12155-016-9751-1},
journal = {BioEnergy Research},
number = 4,
volume = 9,
place = {United States},
year = {Wed May 18 00:00:00 EDT 2016},
month = {Wed May 18 00:00:00 EDT 2016}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record

Citation Metrics:
Cited by: 10 works
Citation information provided by
Web of Science

Figures / Tables:

Fig. 1 Fig. 1: Pictures of the field taken at various time points across the 2012 (a) and 2013 (b) growing seasons. Vertical bar = 2 m.

Save / Share:

Works referenced in this record:

Cellulosic Biofuels
journal, June 2009


Feedstocks for Lignocellulosic Biofuels
journal, August 2010

  • Somerville, Cris; Youngs, Heather; Taylor, Caroline
  • Science, Vol. 329, Issue 5993, p. 790-792
  • DOI: 10.1126/science.1189268

Managing and enhancing switchgrass as a bioenergy feedstock
journal, November 2008

  • Mitchell, Rob; Vogel, Kenneth P.; Sarath, Gautam
  • Biofuels, Bioproducts and Biorefining, Vol. 2, Issue 6
  • DOI: 10.1002/bbb.106

Ethanol yields and cell wall properties in divergently bred switchgrass genotypes
journal, October 2011


Genetic manipulation of lignin reduces recalcitrance and improves ethanol production from switchgrass
journal, February 2011

  • Fu, Chunxiang; Mielenz, Jonathan R.; Xiao, Xirong
  • Proceedings of the National Academy of Sciences, Vol. 108, Issue 9, p. 3803-3808
  • DOI: 10.1073/pnas.1100310108

Functional characterization of the switchgrass (Panicum virgatum) R2R3-MYB transcription factor PvMYB4 for improvement of lignocellulosic feedstocks
journal, October 2011


Enhanced characteristics of genetically modified switchgrass (Panicum virgatum L.) for high biofuel production
journal, January 2013

  • Shen, Hui; Poovaiah, Charleson R.; Ziebell, Angela
  • Biotechnology for Biofuels, Vol. 6, Issue 1
  • DOI: 10.1186/1754-6834-6-71

Silencing of 4-coumarate:coenzyme A ligase in switchgrass leads to reduced lignin content and improved fermentable sugar yields for biofuel production
journal, July 2011


Cell-wall carbohydrates and their modification as a resource for biofuels
journal, May 2008


Abiotic and Biotic Stresses and Changes in the Lignin Content and Composition in Plants
journal, April 2010

  • Moura, Jullyana Cristina Magalhães Silva; Bonine, Cesar Augusto Valencise; de Oliveira Fernandes Viana, Juliana
  • Journal of Integrative Plant Biology, Vol. 52, Issue 4
  • DOI: 10.1111/j.1744-7909.2010.00892.x

The role of the secondary cell wall in plant resistance to pathogens
journal, August 2014


Investigating plant cell wall components that affect biomass recalcitrance in poplar and switchgrass
journal, January 2013

  • DeMartini, Jaclyn D.; Pattathil, Sivakumar; Miller, Jeffrey S.
  • Energy & Environmental Science, Vol. 6, Issue 3
  • DOI: 10.1039/c3ee23801f

Biomass pretreatment: Fundamentals toward application
journal, November 2011


Methods for Pretreatment of Lignocellulosic Biomass for Efficient Hydrolysis and Biofuel Production
journal, April 2009

  • Kumar, Parveen; Barrett, Diane M.; Delwiche, Michael J.
  • Industrial & Engineering Chemistry Research, Vol. 48, Issue 8, p. 3713-3729
  • DOI: 10.1021/ie801542g

Altered lignin biosynthesis using biotechnology to improve lignocellulosic biofuel feedstocks
journal, July 2014

  • Poovaiah, Charleson R.; Nageswara-Rao, Madhugiri; Soneji, Jaya R.
  • Plant Biotechnology Journal, Vol. 12, Issue 9
  • DOI: 10.1111/pbi.12225

Genetic manipulation of lignocellulosic biomass for bioenergy
journal, December 2015


Developmental Control of Lignification in Stems of Lowland Switchgrass Variety Alamo and the Effects on Saccharification Efficiency
journal, October 2009


Standardization of Switchgrass Sample Collection for Cell Wall and Biomass Trait Analysis
journal, January 2013


Maize stem tissues: ferulate deposition in developing internode cell walls
journal, July 2003


Lignin Deposition and Associated Changes in Anatomy, Enzyme Activity, Gene Expression, and Ruminal Degradability in Stems of Tall Fescue at Different Developmental Stages
journal, September 2002

  • Chen, Lei; Auh, Chungkyoon; Chen, Fang
  • Journal of Agricultural and Food Chemistry, Vol. 50, Issue 20
  • DOI: 10.1021/jf020516x

Maize Stem Tissues
journal, January 2006


Chemical composition and response to dilute-acid pretreatment and enzymatic saccharification of alfalfa, reed canarygrass, and switchgrass
journal, October 2006


Two-year field analysis of reduced recalcitrance transgenic switchgrass
journal, April 2014

  • Baxter, Holly L.; Mazarei, Mitra; Labbe, Nicole
  • Plant Biotechnology Journal, Vol. 12, Issue 7
  • DOI: 10.1111/pbi.12195

Describing and Quantifying Growth Stages of Perennial Forage Grasses
journal, January 1991


Reducing the Effect of Variable Starch Levels in Biomass Recalcitrance Screening
book, January 2012


ORIGINAL RESEARCH: Lignocellulose recalcitrance screening by integrated high-throughput hydrothermal pretreatment and enzymatic saccharification
journal, April 2010

  • Selig, Michael J.; Tucker, Melvin P.; Sykes, Robert W.
  • Industrial Biotechnology, Vol. 6, Issue 2
  • DOI: 10.1089/ind.2010.0009

New routes for lignin biosynthesis defined by biochemical characterization of recombinant ferulate 5-hydroxylase, a multifunctional cytochrome P450-dependent monooxygenase
journal, August 1999

  • Humphreys, J. M.; Hemm, M. R.; Chapple, C.
  • Proceedings of the National Academy of Sciences, Vol. 96, Issue 18
  • DOI: 10.1073/pnas.96.18.10045

Structure-Function Analyses of a Caffeic Acid O -Methyltransferase from Perennial Ryegrass Reveal the Molecular Basis for Substrate Preference
journal, December 2010


Coniferyl aldehyde 5-hydroxylation and methylation direct syringyl lignin biosynthesis in angiosperms
journal, August 1999

  • Osakabe, K.; Tsao, C. C.; Li, L.
  • Proceedings of the National Academy of Sciences, Vol. 96, Issue 16
  • DOI: 10.1073/pnas.96.16.8955

Genetic background impacts soluble and cell wall-bound aromatics in brown midrib mutants of sorghum
journal, September 2008


The brown midrib3 (bm3) mutation in maize occurs in the gene encoding caffeic acid O-methyltransferase.
journal, April 1995

  • Vignols, F.; Rigau, J.; Torres, M. A.
  • The Plant Cell, Vol. 7, Issue 4
  • DOI: 10.1105/tpc.7.4.407

Cell Wall Metabolism in Response to Abiotic Stress
journal, February 2015

  • Le Gall, Hyacinthe; Philippe, Florian; Domon, Jean-Marc
  • Plants, Vol. 4, Issue 1
  • DOI: 10.3390/plants4010112

Can genetic engineering of lignin deposition be accomplished without an unacceptable yield penalty?
journal, April 2013


Field Evaluation of Transgenic Switchgrass Plants Overexpressing PvMYB4 for Reduced Biomass Recalcitrance
journal, January 2015

  • Baxter, Holly L.; Poovaiah, Charleson R.; Yee, Kelsey L.
  • BioEnergy Research, Vol. 8, Issue 3
  • DOI: 10.1007/s12155-014-9570-1

RNA interference suppression of lignin biosynthesis increases fermentable sugar yields for biofuel production from field-grown sugarcane
journal, April 2013

  • Jung, Je Hyeong; Vermerris, Wilfred; Gallo, Maria
  • Plant Biotechnology Journal, Vol. 11, Issue 6
  • DOI: 10.1111/pbi.12061

Genetic and molecular basis of grass cell-wall degradability. I. Lignin–cell wall matrix interactions
journal, May 2004


Hydroxycinnamates in lignification
journal, August 2009


Monitoring switchgrass composition to optimize harvesting periods for bioenergy and value-added products
journal, September 2013


Development of switchgrass (Panicum virgatum) as a bioenergy feedstock in the United States
journal, June 2005


Biomass Yield and Biofuel Quality of Switchgrass Harvested in Fall or Spring
journal, January 2006

  • Adler, Paul R.; Sanderson, Matt A.; Boateng, Akwasi A.
  • Agronomy Journal, Vol. 98, Issue 6
  • DOI: 10.2134/agronj2005.0351

Effects of altered lignin biosynthesis on phenylpropanoid metabolism and plant stress
journal, November 2013

  • Baxter, Holly L.; Stewart, C. Neal
  • Biofuels, Vol. 4, Issue 6
  • DOI: 10.4155/bfs.13.56

Altering the Cell Wall and Its Impact on Plant Disease: From Forage to Bioenergy
journal, August 2014


Characterization of the Rust Fungus, Puccinia emaculata, and Evaluation of Genetic Variability for Rust Resistance in Switchgrass Populations
journal, October 2012

  • Uppalapati, Srinivasa Rao; Serba, Desalegn D.; Ishiga, Yasuhiro
  • BioEnergy Research, Vol. 6, Issue 2
  • DOI: 10.1007/s12155-012-9263-6

First Report of Rust on Switchgrass ( Panicum virgatum ) Caused by Puccinia emaculata in Tennessee
journal, December 2008


Works referencing / citing this record:

Study of traits and recalcitrance reduction of field-grown COMT down-regulated switchgrass
journal, January 2017


Low Lignin Mutants and Reduction of Lignin Content in Grasses for Increased Utilisation of Lignocellulose
journal, May 2019


Effects of field-grown transgenic switchgrass carbon inputs on soil organic carbon cycling
journal, January 2019


Simultaneous Downregulation of MTHFR and COMT in Switchgrass Affects Plant Performance and Induces Lesion-Mimic Cell Death
journal, June 2017


Effects of field-grown transgenic switchgrass carbon inputs on soil organic carbon cycling
journal, January 2019


Figures/Tables have been extracted from DOE-funded journal article accepted manuscripts.