Removing the barrier to the calculation of activation energies
Abstract
Approaches for directly calculating the activation energy for a chemical reaction from a simulation at a single temperature are explored with applications to both classical and quantum systems. The activation energy is obtained from a time correlation function that can be evaluated from the same molecular dynamics trajectories or quantum dynamics used to evaluate the rate constant itself and thus requires essentially no extra computational work.
- Authors:
-
- Univ. of Kansas, Lawrence, KS (United States). Dept. of Chemistry
- Publication Date:
- Research Org.:
- Univ. of Kansas, Lawrence, KS (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Basic Energy Sciences (BES)
- OSTI Identifier:
- 1329013
- Alternate Identifier(s):
- OSTI ID: 1328056
- Grant/Contract Number:
- FG02-05ER15708
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Journal of Chemical Physics
- Additional Journal Information:
- Journal Volume: 145; Journal Issue: 13; Journal ID: ISSN 0021-9606
- Publisher:
- American Institute of Physics (AIP)
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY; 71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSICS; 74 ATOMIC AND MOLECULAR PHYSICS; rate constants; chemical dynamics; reactive flux; simulation
Citation Formats
Mesele, Oluwaseun O., and Thompson, Ward H. Removing the barrier to the calculation of activation energies. United States: N. p., 2016.
Web. doi:10.1063/1.4964284.
Mesele, Oluwaseun O., & Thompson, Ward H. Removing the barrier to the calculation of activation energies. United States. https://doi.org/10.1063/1.4964284
Mesele, Oluwaseun O., and Thompson, Ward H. Thu .
"Removing the barrier to the calculation of activation energies". United States. https://doi.org/10.1063/1.4964284. https://www.osti.gov/servlets/purl/1329013.
@article{osti_1329013,
title = {Removing the barrier to the calculation of activation energies},
author = {Mesele, Oluwaseun O. and Thompson, Ward H.},
abstractNote = {Approaches for directly calculating the activation energy for a chemical reaction from a simulation at a single temperature are explored with applications to both classical and quantum systems. The activation energy is obtained from a time correlation function that can be evaluated from the same molecular dynamics trajectories or quantum dynamics used to evaluate the rate constant itself and thus requires essentially no extra computational work.},
doi = {10.1063/1.4964284},
journal = {Journal of Chemical Physics},
number = 13,
volume = 145,
place = {United States},
year = {Thu Oct 06 00:00:00 EDT 2016},
month = {Thu Oct 06 00:00:00 EDT 2016}
}
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Works referenced in this record:
Statistical mechanics of isomerization dynamics in liquids and the transition state approximation
journal, January 1978
- Chandler, David
- The Journal of Chemical Physics, Vol. 68, Issue 6
An iteration method for the solution of the eigenvalue problem of linear differential and integral operators
journal, October 1950
- Lanczos, C.
- Journal of Research of the National Bureau of Standards, Vol. 45, Issue 4
On the Molecular Mechanism of Water Reorientation
journal, November 2008
- Laage, Damien; Hynes, James T.
- The Journal of Physical Chemistry B, Vol. 112, Issue 45
Quantum mechanical rate constants for bimolecular reactions
journal, November 1983
- Miller, William H.; Schwartz, Steven D.; Tromp, John W.
- The Journal of Chemical Physics, Vol. 79, Issue 10
Quantum flux operators and thermal rate constant: Collinear H+H 2
journal, April 1988
- Park, Tae Jun; Light, J. C.
- The Journal of Chemical Physics, Vol. 88, Issue 8
A novel discrete variable representation for quantum mechanical reactive scattering via the S ‐matrix Kohn method
journal, February 1992
- Colbert, Daniel T.; Miller, William H.
- The Journal of Chemical Physics, Vol. 96, Issue 3
Statistical Merchanics Applied to Chemical Kinetics.
journal, December 1920
- Tolman, Richard C.
- Journal of the American Chemical Society, Vol. 42, Issue 12
Application of transition path sampling methods in catalysis: A new mechanism for CC bond formation in the methanol coupling reaction in chabazite
journal, July 2005
- Lo, Cynthia S.; Radhakrishnan, Ravi; Trout, Bernhardt L.
- Catalysis Today, Vol. 105, Issue 1
Quantum Statistical Mechanical Theory of the Rate of Exchange Chemical Reactions in the Gas Phase
journal, July 1960
- Yamamoto, Tsunenobu
- The Journal of Chemical Physics, Vol. 33, Issue 1
Overcoming barriers in trajectory space: Mechanism and kinetics of rare events via Wang–Landau enhanced transition path sampling
journal, October 2010
- Borrero, Ernesto E.; Dellago, Christoph
- The Journal of Chemical Physics, Vol. 133, Issue 13
On the “direct” calculation of thermal rate constants. II. The flux-flux autocorrelation function with absorbing potentials, with application to the O+HCl→OH+Cl reaction
journal, January 1997
- Thompson, Ward H.; Miller, William H.
- The Journal of Chemical Physics, Vol. 106, Issue 1
A Molecular Jump Mechanism of Water Reorientation
journal, February 2006
- Laage, D.
- Science, Vol. 311, Issue 5762
The stable states picture of chemical reactions. II. Rate constants for condensed and gas phase reaction models
journal, September 1980
- Grote, Richard F.; Hynes, James T.
- The Journal of Chemical Physics, Vol. 73, Issue 6
The stable states picture of chemical reactions. I. Formulation for rate constants and initial condition effects
journal, September 1980
- Northrup, Scott H.; Hynes, James T.
- The Journal of Chemical Physics, Vol. 73, Issue 6
On the Reorientation and Hydrogen-Bond Dynamics of Alcohols
journal, October 2011
- Vartia, Anthony A.; Mitchell-Koch, Katie R.; Stirnemann, Guillaume
- The Journal of Physical Chemistry B, Vol. 115, Issue 42
Activation energy for a model ferrous-ferric half reaction from transition path sampling
journal, January 2012
- Drechsel-Grau, Christof; Sprik, Michiel
- The Journal of Chemical Physics, Vol. 136, Issue 3
T RANSITION P ATH S AMPLING : Throwing Ropes Over Rough Mountain Passes, in the Dark
journal, October 2002
- Bolhuis, Peter G.; Chandler, David; Dellago, Christoph
- Annual Review of Physical Chemistry, Vol. 53, Issue 1
On transition‐state theory and the classical mechanics of collinear collisions
journal, February 1973
- Pechukas, Philip; McLafferty, Francis J.
- The Journal of Chemical Physics, Vol. 58, Issue 4
Fast Parallel Algorithms for Short-Range Molecular Dynamics
journal, March 1995
- Plimpton, Steve
- Journal of Computational Physics, Vol. 117, Issue 1
The missing term in effective pair potentials
journal, November 1987
- Berendsen, H. J. C.; Grigera, J. R.; Straatsma, T. P.
- The Journal of Physical Chemistry, Vol. 91, Issue 24
Quantum mechanical transition state theory and a new semiclassical model for reaction rate constants
journal, September 1974
- Miller, William H.
- The Journal of Chemical Physics, Vol. 61, Issue 5
Activation Energies from Transition Path Sampling Simulations
journal, September 2004
- Dellago, Christoph; Bolhuis, Peter G.
- Molecular Simulation, Vol. 30, Issue 11-12
Works referencing / citing this record:
Removing the barrier to the calculation of activation energies: Diffusion coefficients and reorientation times in liquid water
journal, October 2017
- Piskulich, Zeke A.; Mesele, Oluwaseun O.; Thompson, Ward H.
- The Journal of Chemical Physics, Vol. 147, Issue 13
Expanding the calculation of activation volumes: Self-diffusion in liquid water
journal, April 2018
- Piskulich, Zeke A.; Mesele, Oluwaseun O.; Thompson, Ward H.
- The Journal of Chemical Physics, Vol. 148, Issue 13
The activation energy for water reorientation differs between IR pump-probe and NMR measurements
journal, October 2018
- Piskulich, Zeke A.; Thompson, Ward H.
- The Journal of Chemical Physics, Vol. 149, Issue 16
Rate constants in spatially inhomogeneous systems
journal, May 2019
- Schile, Addison J.; Limmer, David T.
- The Journal of Chemical Physics, Vol. 150, Issue 19
On the temperature dependence of liquid structure
journal, January 2020
- Piskulich, Zeke A.; Thompson, Ward H.
- The Journal of Chemical Physics, Vol. 152, Issue 1