Transcriptional responses of Arabidopsis thaliana to chewing and sucking insect herbivores
Abstract
We tested the hypothesis that Arabidopsis can recognize and respond differentially to insect species at the transcriptional level using a genome wide microarray. Transcriptional reprogramming was characterized using co-expression analysis in damaged and undamaged leaves at two times in response to mechanical wounding and four insect species. In all, 2778 (10.6%) of annotated genes on the array were differentially expressed in at least one treatment. Responses differed mainly between aphid and caterpillar and sampling times. Responses to aphids and caterpillars shared only 10% of up-regulated and 8% of down-regulated genes. Responses to two caterpillars shared 21 and 12% of up- and down-regulated genes, whereas responses to the two aphids shared only 7 and 4% of up-regulated and down-regulated genes. Overlap in genes expressed between 6 and 24 h was 3–15%, and depended on the insect species. Responses in attacked and unattacked leaves differed at 6 h but converged by 24 h. Genes responding to the insects are also responsive to many stressors and included primary metabolism. Aphids down-regulated amino acid catabolism; caterpillars stimulated production of amino acids involved in glucosinolate synthesis. Co-expression analysis revealed 17 response networks. Transcription factors were a major portion of differentially expressed genes throughout and responsivemore »
- Authors:
-
- Univ. of Missouri, Columbia, MO (United States)
- Pennsylvania State Univ., University Park, PA (United States)
- Univ. of British Columbia, Vancouver, BC (Canada); Univ. of Victoria, BC (Canada)
- Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
- Fitchburg State Univ., Fitchburg, MA (United States)
- Univ. of British Columbia, Vancouver, BC (Canada)
- Publication Date:
- Research Org.:
- Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)
- Sponsoring Org.:
- USDOE
- OSTI Identifier:
- 1265717
- Grant/Contract Number:
- AC05-00OR22725
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Frontiers in Plant Science
- Additional Journal Information:
- Journal Volume: 5; Journal ID: ISSN 1664-462X
- Publisher:
- Frontiers Research Foundation
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 60 APPLIED LIFE SCIENCES
Citation Formats
Appel, Heidi M., Fescemyer, Howard, Ehlting, Juergen, Weston, David, Rehrig, Erin, Joshi, Trupti, Xu, Dong, Bohlmann, Joerg, and Schultz, Jack. Transcriptional responses of Arabidopsis thaliana to chewing and sucking insect herbivores. United States: N. p., 2014.
Web. doi:10.3389/fpls.2014.00565.
Appel, Heidi M., Fescemyer, Howard, Ehlting, Juergen, Weston, David, Rehrig, Erin, Joshi, Trupti, Xu, Dong, Bohlmann, Joerg, & Schultz, Jack. Transcriptional responses of Arabidopsis thaliana to chewing and sucking insect herbivores. United States. https://doi.org/10.3389/fpls.2014.00565
Appel, Heidi M., Fescemyer, Howard, Ehlting, Juergen, Weston, David, Rehrig, Erin, Joshi, Trupti, Xu, Dong, Bohlmann, Joerg, and Schultz, Jack. Fri .
"Transcriptional responses of Arabidopsis thaliana to chewing and sucking insect herbivores". United States. https://doi.org/10.3389/fpls.2014.00565. https://www.osti.gov/servlets/purl/1265717.
@article{osti_1265717,
title = {Transcriptional responses of Arabidopsis thaliana to chewing and sucking insect herbivores},
author = {Appel, Heidi M. and Fescemyer, Howard and Ehlting, Juergen and Weston, David and Rehrig, Erin and Joshi, Trupti and Xu, Dong and Bohlmann, Joerg and Schultz, Jack},
abstractNote = {We tested the hypothesis that Arabidopsis can recognize and respond differentially to insect species at the transcriptional level using a genome wide microarray. Transcriptional reprogramming was characterized using co-expression analysis in damaged and undamaged leaves at two times in response to mechanical wounding and four insect species. In all, 2778 (10.6%) of annotated genes on the array were differentially expressed in at least one treatment. Responses differed mainly between aphid and caterpillar and sampling times. Responses to aphids and caterpillars shared only 10% of up-regulated and 8% of down-regulated genes. Responses to two caterpillars shared 21 and 12% of up- and down-regulated genes, whereas responses to the two aphids shared only 7 and 4% of up-regulated and down-regulated genes. Overlap in genes expressed between 6 and 24 h was 3–15%, and depended on the insect species. Responses in attacked and unattacked leaves differed at 6 h but converged by 24 h. Genes responding to the insects are also responsive to many stressors and included primary metabolism. Aphids down-regulated amino acid catabolism; caterpillars stimulated production of amino acids involved in glucosinolate synthesis. Co-expression analysis revealed 17 response networks. Transcription factors were a major portion of differentially expressed genes throughout and responsive genes shared most of the known or postulated binding sites. However, cis-element composition of genes down regulated by the aphid M. persicae was unique, as were those of genes down-regulated by caterpillars. As many as 20 cis-elements were over-represented in one or more treatments, including some from well-characterized classes and others as yet uncharacterized. We suggest that transcriptional changes elicited by wounding and insects are heavily influenced by transcription factors and involve both enrichment of a common set of cis-elements and a unique enrichment of a few cis-elements in responding genes.},
doi = {10.3389/fpls.2014.00565},
journal = {Frontiers in Plant Science},
number = ,
volume = 5,
place = {United States},
year = {Fri Nov 14 00:00:00 EST 2014},
month = {Fri Nov 14 00:00:00 EST 2014}
}
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