Microbial mineral colonization across a subsurface redox transition zone
Abstract
Here, this study employed 16S rRNA gene amplicon pyrosequencing to examine the hypothesis that chemolithotrophic Fe(II)-oxidizing bacteria (FeOB) would preferentially colonize the Fe(II)-bearing mineral biotite compared to quartz sand when the minerals were incubated in situ within a subsurface redox transition zone (RTZ) at the Hanford 300 Area site in Richland, WA, USA. The work was motivated by the recently documented presence of neutral-pH chemolithotrophic FeOB capable of oxidizing structural Fe(II) in primary silicate and secondary phyllosilicate minerals in 300 Area sediments and groundwater (Benzine et al., 2013). Sterilized portions of sand+biotite or sand alone were incubated in situ for 5 months within a multilevel sampling (MLS) apparatus that spanned a ca. 2-m interval across the RTZ in two separate groundwater wells. Parallel MLS measurements of aqueous geochemical species were performed prior to deployment of the minerals. Contrary to expectations, the 16S rRNA gene libraries showed no significant difference in microbial communities that colonized the sand+biotite vs. sand-only deployments. Both mineral-associated and groundwater communities were dominated by heterotrophic taxa, with organisms from the Pseudomonadaceae accounting for up to 70% of all reads from the colonized minerals. These results are consistent with previous results indicating the capacity for heterotrophic metabolism (includingmore »
- Authors:
-
- Univ. of Wisconsin-Madison, Madison, WI (United States)
- Pacific Northwest National Lab. (PNNL), Richland, WA (United States)
- Publication Date:
- Research Org.:
- Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER)
- OSTI Identifier:
- 1260831
- Alternate Identifier(s):
- OSTI ID: 1347712
- Report Number(s):
- PNNL-SA-112780
Journal ID: ISSN 1664-302X
- Grant/Contract Number:
- AC05-76RL01830
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Frontiers in Microbiology
- Additional Journal Information:
- Journal Volume: 6; Journal ID: ISSN 1664-302X
- Publisher:
- Frontiers Research Foundation
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; subsurface sediments; redox transition; minerals; colonization; amplicon sequencing; 58 GEOSCIENCES
Citation Formats
Converse, Brandon J., McKinley, James P., Resch, Charles T., and Roden, Eric E. Microbial mineral colonization across a subsurface redox transition zone. United States: N. p., 2015.
Web. doi:10.3389/fmicb.2015.00858.
Converse, Brandon J., McKinley, James P., Resch, Charles T., & Roden, Eric E. Microbial mineral colonization across a subsurface redox transition zone. United States. https://doi.org/10.3389/fmicb.2015.00858
Converse, Brandon J., McKinley, James P., Resch, Charles T., and Roden, Eric E. Fri .
"Microbial mineral colonization across a subsurface redox transition zone". United States. https://doi.org/10.3389/fmicb.2015.00858. https://www.osti.gov/servlets/purl/1260831.
@article{osti_1260831,
title = {Microbial mineral colonization across a subsurface redox transition zone},
author = {Converse, Brandon J. and McKinley, James P. and Resch, Charles T. and Roden, Eric E.},
abstractNote = {Here, this study employed 16S rRNA gene amplicon pyrosequencing to examine the hypothesis that chemolithotrophic Fe(II)-oxidizing bacteria (FeOB) would preferentially colonize the Fe(II)-bearing mineral biotite compared to quartz sand when the minerals were incubated in situ within a subsurface redox transition zone (RTZ) at the Hanford 300 Area site in Richland, WA, USA. The work was motivated by the recently documented presence of neutral-pH chemolithotrophic FeOB capable of oxidizing structural Fe(II) in primary silicate and secondary phyllosilicate minerals in 300 Area sediments and groundwater (Benzine et al., 2013). Sterilized portions of sand+biotite or sand alone were incubated in situ for 5 months within a multilevel sampling (MLS) apparatus that spanned a ca. 2-m interval across the RTZ in two separate groundwater wells. Parallel MLS measurements of aqueous geochemical species were performed prior to deployment of the minerals. Contrary to expectations, the 16S rRNA gene libraries showed no significant difference in microbial communities that colonized the sand+biotite vs. sand-only deployments. Both mineral-associated and groundwater communities were dominated by heterotrophic taxa, with organisms from the Pseudomonadaceae accounting for up to 70% of all reads from the colonized minerals. These results are consistent with previous results indicating the capacity for heterotrophic metabolism (including anaerobic metabolism below the RTZ) as well as the predominance of heterotrophic taxa within 300 Area sediments and groundwater. Although heterotrophic organisms clearly dominated the colonized minerals, several putative lithotrophic (NH4+, H2, Fe(II), and HS- oxidizing) taxa were detected in significant abundance above and within the RTZ. Lastly, such organisms may play a role in the coupling of anaerobic microbial metabolism to oxidative pathways with attendant impacts on elemental cycling and redox-sensitive contaminant behavior in the vicinity of the RTZ.},
doi = {10.3389/fmicb.2015.00858},
journal = {Frontiers in Microbiology},
number = ,
volume = 6,
place = {United States},
year = {Fri Aug 28 00:00:00 EDT 2015},
month = {Fri Aug 28 00:00:00 EDT 2015}
}
Free Publicly Available Full Text
Publisher's Version of Record
Other availability
Search WorldCat to find libraries that may hold this journal
Cited by: 16 works
Citation information provided by
Web of Science
Web of Science
Save to My Library
You must Sign In or Create an Account in order to save documents to your library.
Works referenced in this record:
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
journal, September 1997
- Altschul, Stephen F.; Madden, Thomas L.; Schäffer, Alejandro A.
- Nucleic Acids Research, Vol. 25, Issue 17, p. 3389-3402
Potential plant growth promoting traits and bioacidulation of rock phosphate by thiosulfate oxidizing bacteria isolated from crop plants
journal, December 2008
- Anandham, R.; Gandhi, P. Indira; Madhaiyan, M.
- Journal of Basic Microbiology, Vol. 48, Issue 6
Examining the global distribution of dominant archaeal populations in soil
journal, November 2010
- Bates, Scott T.; Berg-Lyons, Donna; Caporaso, J. Gregory
- The ISME Journal, Vol. 5, Issue 5
Fe-phyllosilicate redox cycling organisms from a redox transition zone in Hanford 300 Area sediments
journal, January 2013
- Benzine, Jason; Shelobolina, Evgenya; Xiong, Mai Yia
- Frontiers in Microbiology, Vol. 4
The Role of Nitrogen Fixation in Cyanobacterial Bloom Toxicity in a Temperate, Eutrophic Lake
journal, February 2013
- Beversdorf, Lucas J.; Miller, Todd R.; McMahon, Katherine D.
- PLoS ONE, Vol. 8, Issue 2
Application of a High-Density Oligonucleotide Microarray Approach To Study Bacterial Population Dynamics during Uranium Reduction and Reoxidation
journal, September 2006
- Brodie, E. L.; DeSantis, T. Z.; Joyner, D. C.
- Applied and Environmental Microbiology, Vol. 72, Issue 9
Bioreduction of biotite and chlorite by a Shewanella species
journal, August 2014
- Brookshaw, D. R.; Lloyd, J. R.; Vaughan, D. J.
- American Mineralogist, Vol. 99, Issue 8-9
QIIME allows analysis of high-throughput community sequencing data
journal, April 2010
- Caporaso, J. Gregory; Kuczynski, Justin; Stombaugh, Jesse
- Nature Methods, Vol. 7, Issue 5
Identifying the Sources of Subsurface Contamination at the Hanford Site in Washington using High-Precision Uranium Isotopic Measurements
journal, June 2004
- Christensen, John N.; Dresel, P. Evan; Conrad, Mark E.
- Environmental Science & Technology, Vol. 38, Issue 12
Non-parametric multivariate analyses of changes in community structure
journal, March 1993
- Clarke, K. R.
- Austral Ecology, Vol. 18, Issue 1
Geothrix fermentans gen. nov., sp. nov., a novel Fe(III)-reducing bacterium from a hydrocarbon-contaminated aquifer
journal, October 1999
- Coates, J. D.; Ellis, D. J.; Gaw, C. V.
- International Journal of Systematic Bacteriology, Vol. 49, Issue 4
Microbial Reduction of Structural Fe(III) in Illite and Goethite
journal, April 2003
- Dong, Hailiang; Kukkadapu, Ravi K.; Fredrickson, James K.
- Environmental Science & Technology, Vol. 37, Issue 7
Search and clustering orders of magnitude faster than BLAST
journal, August 2010
- Edgar, Robert C.
- Bioinformatics, Vol. 26, Issue 19, p. 2460-2461
UCHIME improves sensitivity and speed of chimera detection
journal, June 2011
- Edgar, Robert C.; Haas, Brian J.; Clemente, Jose C.
- Bioinformatics, Vol. 27, Issue 16
A new obligately chemolithoautotrophic, nitrite-oxidizing bacterium,Nitrospira moscoviensis sp. nov. and its phylogenetic relationship
journal, July 1995
- Ehrich, Silke; Behrens, Doris; Lebedeva, Elena
- Archives of Microbiology, Vol. 164, Issue 1
Phylogenetic Diversity (PD) and Biodiversity Conservation: Some Bioinformatics Challenges
journal, January 2006
- Faith, Daniel P.; Baker, Andrew M.
- Evolutionary Bioinformatics, Vol. 2
What's New Is Old: Resolving the Identity of Leptothrix ochracea Using Single Cell Genomics, Pyrosequencing and FISH
journal, March 2011
- Fleming, Emily J.; Langdon, Amy E.; Martinez-Garcia, Manuel
- PLoS ONE, Vol. 6, Issue 3
Polyphasic Taxonomy
book, January 2001
- Gillis, Monique; Vandamme, Peter; De Vos, Paul
- Bergey’s Manual® of Systematic Bacteriology
Electron Transfer by Desulfobulbus propionicus to Fe(III) and Graphite Electrodes
journal, February 2004
- Holmes, D. E.; Bond, D. R.; Lovley, D. R.
- Applied and Environmental Microbiology, Vol. 70, Issue 2
Analysis of methanotrophic bacteria in Movile Cave by stable isotope probing: Methanotrophs in Movile Cave
journal, December 2003
- Hutchens, Elena; Radajewski, Stefan; Dumont, Marc G.
- Environmental Microbiology, Vol. 6, Issue 2
Enrichment and Characterization of an Autotrophic Ammonia-Oxidizing Archaeon of Mesophilic Crenarchaeal Group I.1a from an Agricultural Soil
journal, October 2011
- Jung, Man-Young; Park, Soo-Je; Min, Deullae
- Applied and Environmental Microbiology, Vol. 77, Issue 24
Growth of nitrite-oxidizing bacteria by aerobic hydrogen oxidation
journal, August 2014
- Koch, H.; Galushko, A.; Albertsen, M.
- Science, Vol. 345, Issue 6200
Isolation of an autotrophic ammonia-oxidizing marine archaeon
journal, September 2005
- Könneke, Martin; Bernhard, Anne E.; de la Torre, José R.
- Nature, Vol. 437, Issue 7058
Environmental Controls on the Activity of Aquifer Microbial Communities in the 300 Area of the Hanford Site
journal, September 2013
- Konopka, Allan; Plymale, Andrew E.; Carvajal, Denny A.
- Microbial Ecology, Vol. 66, Issue 4
Growth of Iron(III)-Reducing Bacteria on Clay Minerals as the Sole Electron Acceptor and Comparison of Growth Yields on a Variety of Oxidized Iron Forms
journal, December 2002
- Kostka, J. E.; Dalton, D. D.; Skelton, H.
- Applied and Environmental Microbiology, Vol. 68, Issue 12
Reduction of Structural Fe(III) in Smectite by a Pure Culture of Shewanella Putrefaciens Strain MR-1
journal, January 1996
- Kostka, Joel E.
- Clays and Clay Minerals, Vol. 44, Issue 4
Microbial Reductive Transformation of Phyllosilicate Fe(III) and U(VI) in Fluvial Subsurface Sediments
journal, March 2012
- Lee, Ji-Hoon; Fredrickson, James K.; Kukkadapu, Ravi K.
- Environmental Science & Technology, Vol. 46, Issue 7
An autotrophic H 2 -oxidizing, nitrate-respiring, Tc(VII)-reducing A cidovorax sp. isolated from a subsurface oxic-anoxic transition zone : H
journal, April 2015
- Lee, Ji-Hoon; Fredrickson, James K.; Plymale, Andrew E.
- Environmental Microbiology Reports, Vol. 7, Issue 3
Distribution of Microbial Biomass and Potential for Anaerobic Respiration in Hanford Site 300 Area Subsurface Sediment
journal, December 2011
- Lin, Xueju; Kennedy, David; Peacock, Aaron
- Applied and Environmental Microbiology, Vol. 78, Issue 3
Vertical stratification of subsurface microbial community composition across geological formations at the Hanford Site: Hanford Site subsurface microbial communities
journal, November 2011
- Lin, Xueju; Kennedy, David; Fredrickson, Jim
- Environmental Microbiology, Vol. 14, Issue 2
Spatial and temporal dynamics of the microbial community in the Hanford unconfined aquifer
journal, March 2012
- Lin, Xueju; McKinley, James; Resch, Charles T.
- The ISME Journal, Vol. 6, Issue 9
Fe(III) and S0 reduction by Pelobacter carbinolicus.
journal, January 1995
- Lovley, D. R.; Phillips, E. J.; Lonergan, D. J.
- Applied and environmental microbiology, Vol. 61, Issue 6
UniFrac: a New Phylogenetic Method for Comparing Microbial Communities
journal, December 2005
- Lozupone, C.; Knight, R.
- Applied and Environmental Microbiology, Vol. 71, Issue 12
Thioprofundum hispidum sp. nov., an obligately chemolithoautotrophic sulfur-oxidizing gammaproteobacterium isolated from the hydrothermal field on Suiyo Seamount, and proposal of Thioalkalispiraceae fam. nov. in the order Chromatiales
journal, November 2010
- Mori, K.; Suzuki, K. -i.; Urabe, T.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 61, Issue 10
A Molecular View of Microbial Diversity and the Biosphere
journal, May 1997
- Pace, N. R.
- Science, Vol. 276, Issue 5313, p. 734-740
Geochemical and Microbiological Responses to Oxidant Introduction into Reduced Subsurface Sediment from the Hanford 300 Area, Washington
journal, July 2014
- Percak-Dennett, Elizabeth M.; Roden, Eric E.
- Environmental Science & Technology, Vol. 48, Issue 16
Pertechnetate (TcO4−) reduction by reactive ferrous iron forms in naturally anoxic, redox transition zone sediments from the Hanford Site, USA
journal, September 2012
- Peretyazhko, T. S.; Zachara, J. M.; Kukkadapu, R. K.
- Geochimica et Cosmochimica Acta, Vol. 92
Characterization of Melioribacter roseus gen. nov., sp. nov., a novel facultatively anaerobic thermophilic cellulolytic bacterium from the class Ignavibacteria , and a proposal of a novel bacterial phylum I gnavibacteriae
journal, January 2013
- Podosokorskaya, Olga A.; Kadnikov, Vitaly V.; Gavrilov, Sergey N.
- Environmental Microbiology, Vol. 15, Issue 6
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
journal, March 2010
- Price, Morgan N.; Dehal, Paramvir S.; Arkin, Adam P.
- PLoS ONE, Vol. 5, Issue 3
Microbial iron-redox cycling in subsurface environments
journal, November 2012
- Roden, Eric E.
- Biochemical Society Transactions, Vol. 40, Issue 6
Potential for Microscale Bacterial Fe Redox Cycling at the Aerobic-Anaerobic Interface
journal, September 2004
- Roden, Eric E.; Sobolev, Dmitri; Glazer, Brian
- Geomicrobiology Journal, Vol. 21, Issue 6
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
journal, October 2009
- Schloss, P. D.; Westcott, S. L.; Ryabin, T.
- Applied and Environmental Microbiology, Vol. 75, Issue 23, p. 7537-7541
Use of Ferric and Ferrous Iron Containing Minerals for Respiration by Desulfitobacterium frappieri
journal, March 2003
- Shelobolina, Evgenya S.; VanPraagh, Catherine Gaw; Lovley, Derek R.
- Geomicrobiology Journal, Vol. 20, Issue 2
Isolation of Phyllosilicate–Iron Redox Cycling Microorganisms from an Illite–Smectite Rich Hydromorphic Soil
journal, January 2012
- Shelobolina, Evgenya; Konishi, Hiromi; Xu, Huifang
- Frontiers in Microbiology, Vol. 3
Microbial Lithotrophic Oxidation of Structural Fe(II) in Biotite
journal, June 2012
- Shelobolina, Evgenya; Xu, Huifang; Konishi, Hiromi
- Applied and Environmental Microbiology, Vol. 78, Issue 16
Halothiobacillus kellyi sp. nov., a mesophilic, obligately chemolithoautotrophic, sulfur-oxidizing bacterium isolated from a shallow-water hydrothermal vent in the Aegean Sea, and emended description of the genus Halothiobacillus.
journal, May 2000
- Sievert, S. M.; Heidorn, T.; Kuever, J.
- International Journal of Systematic and Evolutionary Microbiology, Vol. 50, Issue 3
Quantifying community assembly processes and identifying features that impose them
journal, June 2013
- Stegen, James C.; Lin, Xueju; Fredrickson, Jim K.
- The ISME Journal, Vol. 7, Issue 11
Iron metabolism in anoxic environments at near neutral pH
journal, January 2001
- Straub, Kristina L.; Benz, Marcus; Schink, Bernhard
- FEMS Microbiology Ecology, Vol. 34, Issue 3
Microbially Mediated Oxidative Precipitation Reactions
book, January 1999
- Tebo, B. M.; He, L. M.
- ACS Symposium Series
New cultivation medium for “Ferrovum” and Gallionella-related strains
journal, November 2013
- Tischler, Judith S.; Jwair, Rawaa Jaffer; Gelhaar, Nadja
- Journal of Microbiological Methods, Vol. 95, Issue 2
Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy
journal, June 2007
- Wang, Q.; Garrity, G. M.; Tiedje, J. M.
- Applied and Environmental Microbiology, Vol. 73, Issue 16
Single-cell genomics reveals metabolic strategies for microbial growth and survival in an oligotrophic aquifer
journal, February 2014
- Wilkins, Michael J.; Kennedy, David W.; Castelle, Cindy J.
- Microbiology, Vol. 160, Issue 2
Hydrogenophaga, a New Genus of Hydrogen-Oxidizing Bacteria That Includes Hydrogenophaga flava comb. nov. (Formerly Pseudomonas flava), Hydrogenophaga palleronii (Formerly Pseudomonas palleronii), Hydrogenophaga pseudoflava (Formerly Pseudomonas pseudoflava and "Pseudomonas carboxydoflava"), and Hydrogenophaga taeniospiralis (Formerly Pseudomonas taeniospiralis)
journal, July 1989
- Willems, A.; Busse, J.; Goor, M.
- International Journal of Systematic Bacteriology, Vol. 39, Issue 3
Isolation and characterization of a new facultatively autotrophic hydrogen-oxidizing Betaproteobacterium, Hydrogenophaga sp. AH-24
journal, January 2008
- Yoon, Ki-Seok; Tsukada, Natsuki; Sakai, Yukiko
- FEMS Microbiology Letters, Vol. 278, Issue 1
Geochemical Processes Controlling Migration of Tank Wastes in Hanford's Vadose Zone
journal, January 2007
- Zachara, John M.; Serne, Jeff; Freshley, Mark
- Vadose Zone Journal, Vol. 6, Issue 4
Potential plant growth promoting traits and bioacidulation of rock phosphate by thiosulfate oxidizing bacteria isolated from crop plants
journal, December 2008
- Anandham, R.; Gandhi, P. Indira; Madhaiyan, M.
- Journal of Basic Microbiology, Vol. 48, Issue 6
Polyphasic Taxonomy
book, January 2001
- Gillis, Monique; Vandamme, Peter; De Vos, Paul
- Bergey’s Manual® of Systematic Bacteriology
Environmental Controls on the Activity of Aquifer Microbial Communities in the 300 Area of the Hanford Site
journal, September 2013
- Konopka, Allan; Plymale, Andrew E.; Carvajal, Denny A.
- Microbial Ecology, Vol. 66, Issue 4
Pertechnetate (TcO4−) reduction by reactive ferrous iron forms in naturally anoxic, redox transition zone sediments from the Hanford Site, USA
journal, September 2012
- Peretyazhko, T. S.; Zachara, J. M.; Kukkadapu, R. K.
- Geochimica et Cosmochimica Acta, Vol. 92
New cultivation medium for “Ferrovum” and Gallionella-related strains
journal, November 2013
- Tischler, Judith S.; Jwair, Rawaa Jaffer; Gelhaar, Nadja
- Journal of Microbiological Methods, Vol. 95, Issue 2
Microbially Mediated Oxidative Precipitation Reactions
book, January 1999
- Tebo, B. M.; He, L. M.
- ACS Symposium Series
Microbial Reduction of Structural Fe(III) in Illite and Goethite
journal, April 2003
- Dong, Hailiang; Kukkadapu, Ravi K.; Fredrickson, James K.
- Environmental Science & Technology, Vol. 37, Issue 7
Identifying the Sources of Subsurface Contamination at the Hanford Site in Washington using High-Precision Uranium Isotopic Measurements
journal, June 2004
- Christensen, John N.; Dresel, P. Evan; Conrad, Mark E.
- Environmental Science & Technology, Vol. 38, Issue 12
Microbial Reductive Transformation of Phyllosilicate Fe(III) and U(VI) in Fluvial Subsurface Sediments
journal, March 2012
- Lee, Ji-Hoon; Fredrickson, James K.; Kukkadapu, Ravi K.
- Environmental Science & Technology, Vol. 46, Issue 7
Examining the global distribution of dominant archaeal populations in soil
journal, November 2010
- Bates, Scott T.; Berg-Lyons, Donna; Caporaso, J. Gregory
- The ISME Journal, Vol. 5, Issue 5
Spatial and temporal dynamics of the microbial community in the Hanford unconfined aquifer
journal, March 2012
- Lin, Xueju; McKinley, James; Resch, Charles T.
- The ISME Journal, Vol. 6, Issue 9
Quantifying community assembly processes and identifying features that impose them
journal, June 2013
- Stegen, James C.; Lin, Xueju; Fredrickson, Jim K.
- The ISME Journal, Vol. 7, Issue 11
Isolation of an autotrophic ammonia-oxidizing marine archaeon
journal, September 2005
- Könneke, Martin; Bernhard, Anne E.; de la Torre, José R.
- Nature, Vol. 437, Issue 7058
Site-specific molecular analysis of the bacteriota on worn spectacles
journal, March 2020
- Fritz, Birgit; März, Melanie; Weis, Severin
- Scientific Reports, Vol. 10, Issue 1
Infant gut microbiota characteristics generally do not modify effects of lipid-based nutrient supplementation on growth or inflammation: secondary analysis of a randomized controlled trial in Malawi
journal, September 2020
- Hughes, Riley L.; Arnold, Charles D.; Young, Rebecca R.
- Scientific Reports, Vol. 10, Issue 1
Use of Ferric and Ferrous Iron Containing Minerals for Respiration by Desulfitobacterium frappieri
journal, March 2003
- Shelobolina, Evgenya S.; VanPraagh, Catherine Gaw; Lovley, Derek R.
- Geomicrobiology Journal, Vol. 20, Issue 2
Potential for Microscale Bacterial Fe Redox Cycling at the Aerobic-Anaerobic Interface
journal, September 2004
- Roden, Eric E.; Sobolev, Dmitri; Glazer, Brian
- Geomicrobiology Journal, Vol. 21, Issue 6
Search and clustering orders of magnitude faster than BLAST
journal, August 2010
- Edgar, Robert C.
- Bioinformatics, Vol. 26, Issue 19, p. 2460-2461
UCHIME improves sensitivity and speed of chimera detection
journal, June 2011
- Edgar, Robert C.; Haas, Brian J.; Clemente, Jose C.
- Bioinformatics, Vol. 27, Issue 16
Hydrogenophaga, a New Genus of Hydrogen-Oxidizing Bacteria That Includes Hydrogenophaga flava comb. nov. (Formerly Pseudomonas flava), Hydrogenophaga palleronii (Formerly Pseudomonas palleronii), Hydrogenophaga pseudoflava (Formerly Pseudomonas pseudoflava and "Pseudomonas carboxydoflava"), and Hydrogenophaga taeniospiralis (Formerly Pseudomonas taeniospiralis)
journal, July 1989
- Willems, A.; Busse, J.; Goor, M.
- International Journal of Systematic Bacteriology, Vol. 39, Issue 3
Geothrix fermentans gen. nov., sp. nov., a novel Fe(III)-reducing bacterium from a hydrocarbon-contaminated aquifer
journal, October 1999
- Coates, J. D.; Ellis, D. J.; Gaw, C. V.
- International Journal of Systematic Bacteriology, Vol. 49, Issue 4
Halothiobacillus kellyi sp. nov., a mesophilic, obligately chemolithoautotrophic, sulfur-oxidizing bacterium isolated from a shallow-water hydrothermal vent in the Aegean Sea, and emended description of the genus Halothiobacillus.
journal, May 2000
- Sievert, S. M.; Heidorn, T.; Kuever, J.
- International Journal of Systematic and Evolutionary Microbiology, Vol. 50, Issue 3
Thioprofundum hispidum sp. nov., an obligately chemolithoautotrophic sulfur-oxidizing gammaproteobacterium isolated from the hydrothermal field on Suiyo Seamount, and proposal of Thioalkalispiraceae fam. nov. in the order Chromatiales
journal, November 2010
- Mori, K.; Suzuki, K. -i.; Urabe, T.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 61, Issue 10
Single-cell genomics reveals metabolic strategies for microbial growth and survival in an oligotrophic aquifer
journal, February 2014
- Wilkins, Michael J.; Kennedy, David W.; Castelle, Cindy J.
- Microbiology, Vol. 160, Issue 2
Characterization of Melioribacter roseus gen. nov., sp. nov., a novel facultatively anaerobic thermophilic cellulolytic bacterium from the class Ignavibacteria , and a proposal of a novel bacterial phylum I gnavibacteriae
journal, January 2013
- Podosokorskaya, Olga A.; Kadnikov, Vitaly V.; Gavrilov, Sergey N.
- Environmental Microbiology, Vol. 15, Issue 6
Vertical stratification of subsurface microbial community composition across geological formations at the Hanford Site: Hanford Site subsurface microbial communities
journal, November 2011
- Lin, Xueju; Kennedy, David; Fredrickson, Jim
- Environmental Microbiology, Vol. 14, Issue 2
Iron metabolism in anoxic environments at near neutral pH
journal, January 2001
- Straub, Kristina L.; Benz, Marcus; Schink, Bernhard
- FEMS Microbiology Ecology, Vol. 34, Issue 3
Isolation and characterization of a new facultatively autotrophic hydrogen-oxidizing Betaproteobacterium, Hydrogenophaga sp. AH-24
journal, January 2008
- Yoon, Ki-Seok; Tsukada, Natsuki; Sakai, Yukiko
- FEMS Microbiology Letters, Vol. 278, Issue 1
Growth of nitrite-oxidizing bacteria by aerobic hydrogen oxidation
journal, August 2014
- Koch, H.; Galushko, A.; Albertsen, M.
- Science, Vol. 345, Issue 6200
Isolation, Characterization, and Ecology of Cold-Active, Chemolithotrophic, Sulfur-Oxidizing Bacteria from Perennially Ice-Covered Lake Fryxell, Antarctica
journal, August 2006
- Sattley, W. Matthew; Madigan, Michael T.
- Applied and Environmental Microbiology, Vol. 72, Issue 8
Biogenic Magnetite Formation through Anaerobic Biooxidation of Fe(II)
journal, June 2001
- Chaudhuri, S. K.; Lack, J. G.; Coates, J. D.
- Applied and Environmental Microbiology, Vol. 67, Issue 6, p. 2844-2848
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
journal, March 2010
- Price, Morgan N.; Dehal, Paramvir S.; Arkin, Adam P.
- PLoS ONE, Vol. 5, Issue 3
What's New Is Old: Resolving the Identity of Leptothrix ochracea Using Single Cell Genomics, Pyrosequencing and FISH
journal, March 2011
- Fleming, Emily J.; Langdon, Amy E.; Martinez-Garcia, Manuel
- PLoS ONE, Vol. 6, Issue 3
The Role of Nitrogen Fixation in Cyanobacterial Bloom Toxicity in a Temperate, Eutrophic Lake
journal, February 2013
- Beversdorf, Lucas J.; Miller, Todd R.; McMahon, Katherine D.
- PLoS ONE, Vol. 8, Issue 2
Geochemical Processes Controlling Migration of Tank Wastes in Hanford's Vadose Zone
journal, January 2007
- Zachara, John M.; Serne, Jeff; Freshley, Mark
- Vadose Zone Journal, Vol. 6, Issue 4
Isolation of Phyllosilicate–Iron Redox Cycling Microorganisms from an Illite–Smectite Rich Hydromorphic Soil
journal, January 2012
- Shelobolina, Evgenya; Konishi, Hiromi; Xu, Huifang
- Frontiers in Microbiology, Vol. 3
Fe-phyllosilicate redox cycling organisms from a redox transition zone in Hanford 300 Area sediments
journal, January 2013
- Benzine, Jason; Shelobolina, Evgenya; Xiong, Mai Yia
- Frontiers in Microbiology, Vol. 4
Works referencing / citing this record:
Impact of hydrologic boundaries on microbial planktonic and biofilm communities in shallow terrestrial subsurface environments
journal, September 2018
- Smith, H. J.; Zelaya, A. J.; De León, K. B.
- FEMS Microbiology Ecology, Vol. 94, Issue 12
Microbial community assembly differs across minerals in a rhizosphere microcosm
journal, September 2018
- Whitman, Thea; Neurath, Rachel; Perera, Adele
- Environmental Microbiology, Vol. 20, Issue 12
Capability for arsenic mobilization in groundwater is distributed across broad phylogenetic lineages
journal, September 2019
- Danczak, Robert E.; Johnston, Michael D.; Kenah, Chris
- PLOS ONE, Vol. 14, Issue 9
Impact of hydrologic boundaries on microbial planktonic and biofilm communities in shallow terrestrial subsurface environments
journal, September 2018
- Smith, H. J.; Zelaya, A. J.; De León, K. B.
- FEMS Microbiology Ecology, Vol. 94, Issue 12