Deciphering ocean carbon in a changing world
Abstract
Dissolved organic matter (DOM) in the oceans is one of the largest pools of reduced carbon on Earth, comparable in size to the atmospheric CO2 reservoir. The cycling of DOM over short and long time scales has profound impacts on the quantity of carbon sequestered in the oceans and the foundations of the food webs that support ocean life. At the heart of this cycle lie molecular-level relationships between the individual molecules in DOM and the members of the ocean microbiome that produce and consume them. In the past, these connections have defied clear definition and study because both DOM and microbial communities consist of many thousands of individual components. Emerging tools in analytical chemistry, microbiology and informatics are breaking down the barriers to a fuller appreciation of these connections. Furthermore, we highlight questions that are being addressed using this new toolkit and consider how these advances are transforming our understanding of some of the most important reactions of the marine carbon cycle.
- Authors:
-
- Univ. of Georgia, Athens, GA (United States)
- Woods Hole Oceanographic Institution, Woods Hole, MA (United States)
- Univ. of Georgia, Savannah, GA (United States)
- Univ. of Washington, Seattle, WA (United States)
- Univ. of California, San Diego, La Jolla, CA (United States)
- Univ. of Tennessee, Knoxville, TN (United States)
- Oregon State Univ., Corvallis, OR (United States)
- Univ. of California, San Diego, La Jolla, CA (United States);
- Columbia Univ., Palisades, NY (United States)
- Pacific Northwest National Lab. (PNNL), Richland, WA (United States)
- Univ. of Oldenburg, Oldenburg (Germany)
- Univ. Pierre et Marie Curie (France)
- Univ. of Chicago, Chicago, IL (United States)
- Publication Date:
- Research Org.:
- Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)
- Sponsoring Org.:
- USDOE
- OSTI Identifier:
- 1254576
- Report Number(s):
- PNNL-SA-114532
Journal ID: ISSN 0027-8424; KP1704020
- Grant/Contract Number:
- AC05-76RL01830
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Proceedings of the National Academy of Sciences of the United States of America
- Additional Journal Information:
- Journal Volume: 113; Journal Issue: 12; Journal ID: ISSN 0027-8424
- Publisher:
- National Academy of Sciences, Washington, DC (United States)
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 54 ENVIRONMENTAL SCIENCES; 37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY; dissolved organic matter; marine microbes; cyberinfrastructure
Citation Formats
Moran, Mary Ann, Kujawinski, Elizabeth B., Stubbins, Aron, Fatland, Rob, Aluwihare, Lihini I., Buchan, Alison, Crump, Byron C., Dorrestein, Pieter C., Dyhrman, Sonya T., Hess, Nancy J., Howe, Bill, Longnecker, Krista, Medeiros, Patricia M., Niggemann, Jutta, Obernosterer, Ingrid, Repeta, Daniel J., and Waldbauer, Jacob R. Deciphering ocean carbon in a changing world. United States: N. p., 2016.
Web. doi:10.1073/pnas.1514645113.
Moran, Mary Ann, Kujawinski, Elizabeth B., Stubbins, Aron, Fatland, Rob, Aluwihare, Lihini I., Buchan, Alison, Crump, Byron C., Dorrestein, Pieter C., Dyhrman, Sonya T., Hess, Nancy J., Howe, Bill, Longnecker, Krista, Medeiros, Patricia M., Niggemann, Jutta, Obernosterer, Ingrid, Repeta, Daniel J., & Waldbauer, Jacob R. Deciphering ocean carbon in a changing world. United States. https://doi.org/10.1073/pnas.1514645113
Moran, Mary Ann, Kujawinski, Elizabeth B., Stubbins, Aron, Fatland, Rob, Aluwihare, Lihini I., Buchan, Alison, Crump, Byron C., Dorrestein, Pieter C., Dyhrman, Sonya T., Hess, Nancy J., Howe, Bill, Longnecker, Krista, Medeiros, Patricia M., Niggemann, Jutta, Obernosterer, Ingrid, Repeta, Daniel J., and Waldbauer, Jacob R. Mon .
"Deciphering ocean carbon in a changing world". United States. https://doi.org/10.1073/pnas.1514645113. https://www.osti.gov/servlets/purl/1254576.
@article{osti_1254576,
title = {Deciphering ocean carbon in a changing world},
author = {Moran, Mary Ann and Kujawinski, Elizabeth B. and Stubbins, Aron and Fatland, Rob and Aluwihare, Lihini I. and Buchan, Alison and Crump, Byron C. and Dorrestein, Pieter C. and Dyhrman, Sonya T. and Hess, Nancy J. and Howe, Bill and Longnecker, Krista and Medeiros, Patricia M. and Niggemann, Jutta and Obernosterer, Ingrid and Repeta, Daniel J. and Waldbauer, Jacob R.},
abstractNote = {Dissolved organic matter (DOM) in the oceans is one of the largest pools of reduced carbon on Earth, comparable in size to the atmospheric CO2 reservoir. The cycling of DOM over short and long time scales has profound impacts on the quantity of carbon sequestered in the oceans and the foundations of the food webs that support ocean life. At the heart of this cycle lie molecular-level relationships between the individual molecules in DOM and the members of the ocean microbiome that produce and consume them. In the past, these connections have defied clear definition and study because both DOM and microbial communities consist of many thousands of individual components. Emerging tools in analytical chemistry, microbiology and informatics are breaking down the barriers to a fuller appreciation of these connections. Furthermore, we highlight questions that are being addressed using this new toolkit and consider how these advances are transforming our understanding of some of the most important reactions of the marine carbon cycle.},
doi = {10.1073/pnas.1514645113},
journal = {Proceedings of the National Academy of Sciences of the United States of America},
number = 12,
volume = 113,
place = {United States},
year = {Mon Mar 07 00:00:00 EST 2016},
month = {Mon Mar 07 00:00:00 EST 2016}
}
Web of Science
Works referenced in this record:
Photo-lability of deep ocean dissolved black carbon
journal, January 2012
- Stubbins, A.; Niggemann, J.; Dittmar, T.
- Biogeosciences, Vol. 9, Issue 5
Diatom exudates influence metabolism and cell growth of co-cultured diatom species
journal, September 2009
- Paul, C.; Barofsky, A.; Vidoudez, C.
- Marine Ecology Progress Series, Vol. 389
Influence of vitamin B auxotrophy on nitrogen metabolism in eukaryotic phytoplankton
journal, January 2012
- Bertrand, Erin M.; Allen, Andrew E.
- Frontiers in Microbiology, Vol. 3
Evidence for a persistent microbial seed bank throughout the global ocean
journal, March 2013
- Gibbons, S. M.; Caporaso, J. G.; Pirrung, M.
- Proceedings of the National Academy of Sciences, Vol. 110, Issue 12
ABC transporters: one, two or four extracytoplasmic substrate-binding sites?
journal, October 2002
- van der Heide, T.; Poolman, B.
- EMBO reports, Vol. 3, Issue 10
Environmental, biochemical and genetic drivers of DMSP degradation and DMS production in the Sargasso Sea: Drivers of DMSP degradation and DMS production
journal, February 2012
- Levine, Naomi Marcil; Varaljay, Vanessa A.; Toole, Dierdre A.
- Environmental Microbiology, Vol. 14, Issue 5
Microbial oceanography of the dark ocean's pelagic realm
journal, June 2009
- Arístegui, Javier; Gasol, Josep M.; Duarte, Carlos M.
- Limnology and Oceanography, Vol. 54, Issue 5
Metatranscriptomic and functional metagenomic analysis of methylphosphonate utilization by marine bacteria
journal, January 2013
- Martínez, Asunción; Ventouras, Laure-Anne; Wilson, Samuel T.
- Frontiers in Microbiology, Vol. 4
Effect of nutrient amendments on bacterioplankton production, community structure, and DOC utilization in the northwestern Sargasso Sea
journal, January 2002
- Carlson, Ca; Giovannoni, Sj; Hansell, Da
- Aquatic Microbial Ecology, Vol. 30
Impact of CO2 enrichment on organic matter dynamics during nutrient induced coastal phytoplankton blooms
journal, January 2014
- Engel, Anja; Piontek, Judith; Grossart, Hans-Peter
- Journal of Plankton Research, Vol. 36, Issue 3
Projected expansion of the subtropical biome and contraction of the temperate and equatorial upwelling biomes in the North Pacific under global warming
journal, February 2011
- Polovina, Jeffrey J.; Dunne, John P.; Woodworth, Phoebe A.
- ICES Journal of Marine Science, Vol. 68, Issue 6
Recalcitrant Dissolved Organic Carbon Fractions
journal, January 2013
- Hansell, Dennis A.
- Annual Review of Marine Science, Vol. 5, Issue 1
2,3-Dihydroxypropane-1-sulfonate degraded by Cupriavidus pinatubonensis JMP134: purification of dihydroxypropanesulfonate 3-dehydrogenase
journal, February 2010
- Mayer, J.; Huhn, T.; Habeck, M.
- Microbiology, Vol. 156, Issue 5
Marine sequestration of carbon in bacterial metabolites
journal, March 2015
- Lechtenfeld, Oliver J.; Hertkorn, Norbert; Shen, Yuan
- Nature Communications, Vol. 6, Issue 1
High-field NMR spectroscopy and FTICR mass spectrometry: powerful discovery tools for the molecular level characterization of marine dissolved organic matter
journal, January 2013
- Hertkorn, N.; Harir, M.; Koch, B. P.
- Biogeosciences, Vol. 10, Issue 3
Multiple B-vitamin depletion in large areas of the coastal ocean
journal, July 2012
- Sanudo-Wilhelmy, S. A.; Cutter, L. S.; Durazo, R.
- Proceedings of the National Academy of Sciences, Vol. 109, Issue 35
Major role of planktonic phosphate reduction in the marine phosphorus redox cycle
journal, May 2015
- Van Mooy, B. A. S.; Krupke, A.; Dyhrman, S. T.
- Science, Vol. 348, Issue 6236
The Black Queen Hypothesis: Evolution of Dependencies through Adaptive Gene Loss
journal, March 2012
- Morris, J. Jeffrey; Lenski, Richard E.; Zinser, Erik R.
- mBio, Vol. 3, Issue 2
Interactions among dissolved organic carbon, microbial processes, and community structure in the mesopelagic zone of the northwestern Sargasso Sea
journal, July 2004
- Carlson, Craig A.; Giovannoni, Stephen J.; Hansell, Dennis A.
- Limnology and Oceanography, Vol. 49, Issue 4
Major role of bacteria in biogeochemical fluxes in the ocean's interior
journal, March 1988
- Cho, Byung C.; Azam, Farooq
- Nature, Vol. 332, Issue 6163
Bioinformatics: The Next Frontier of Metabolomics
journal, November 2014
- Johnson, Caroline H.; Ivanisevic, Julijana; Benton, H. Paul
- Analytical Chemistry, Vol. 87, Issue 1
Emergent Biogeography of Microbial Communities in a Model Ocean
journal, March 2007
- Follows, M. J.; Dutkiewicz, S.; Grant, S.
- Science, Vol. 315, Issue 5820
Marine viruses — major players in the global ecosystem
journal, October 2007
- Suttle, Curtis A.
- Nature Reviews Microbiology, Vol. 5, Issue 10
Inefficient microbial production of refractory dissolved organic matter in the ocean
journal, June 2015
- Osterholz, Helena; Niggemann, Jutta; Giebel, Helge-Ansgar
- Nature Communications, Vol. 6, Issue 1
Concentrations, turnover rates and fluxes of polyamines in coastal waters of the South Atlantic Bight
journal, December 2014
- Liu, Qian; Lu, Xinxin; Tolar, Bradley B.
- Biogeochemistry, Vol. 123, Issue 1-2
The Transcriptome and Proteome of the Diatom Thalassiosira pseudonana Reveal a Diverse Phosphorus Stress Response
journal, March 2012
- Dyhrman, Sonya T.; Jenkins, Bethany D.; Rynearson, Tatiana A.
- PLoS ONE, Vol. 7, Issue 3
Transporter genes expressed by coastal bacterioplankton in response to dissolved organic carbon
journal, March 2010
- Poretsky, Rachel S.; Sun, Shulei; Mou, Xiaozhen
- Environmental Microbiology, Vol. 12, Issue 3
Marine snow, organic solute plumes, and optimal chemosensory behavior of bacteria
journal, August 2001
- Kiørboe, Thomas; Jackson, George A.
- Limnology and Oceanography, Vol. 46, Issue 6
The radiocarbon signature of microorganisms in the mesopelagic ocean
journal, April 2009
- Hansman, R. L.; Griffin, S.; Watson, J. T.
- Proceedings of the National Academy of Sciences, Vol. 106, Issue 16
Quantifying archaeal community autotrophy in the mesopelagic ocean using natural radiocarbon
journal, April 2006
- Ingalls, A. E.; Shah, S. R.; Hansman, R. L.
- Proceedings of the National Academy of Sciences, Vol. 103, Issue 17
Molecular formulae of marine and terrigenous dissolved organic matter detected by electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry
journal, July 2005
- Koch, Boris P.; Witt, Matthias; Engbrodt, Ralph
- Geochimica et Cosmochimica Acta, Vol. 69, Issue 13
Families of transmembrane sugar transport proteins
journal, February 2000
- Saier, Milton H.
- Molecular Microbiology, Vol. 35, Issue 4
Dissolved combined amino acids: Chemical form and utilization by marine bacteria
journal, September 1993
- Keil, Richard G.; Kirchman, David L.
- Limnology and Oceanography, Vol. 38, Issue 6
Nutrient requirements for growth of the extreme oligotroph ‘Candidatus Pelagibacter ubique’ HTCC1062 on a defined medium
journal, October 2012
- Carini, Paul; Steindler, Laura; Beszteri, Sara
- The ISME Journal, Vol. 7, Issue 3
High-Resolution Fourier Transform Ion Cyclotron Resonance Mass Spectrometry of Humic and Fulvic Acids: Improvements and Comparisons
journal, January 2002
- Kujawinski, Elizabeth B.; Hatcher, Patrick G.; Freitas, Michael A.
- Analytical Chemistry, Vol. 74, Issue 2
Bacterial Taxa That Limit Sulfur Flux from the Ocean
journal, October 2006
- Howard, E. C.; Henriksen, J. R.; Buchan, A.
- Science, Vol. 314, Issue 5799
Advanced characterization of marine dissolved organic matter by combining reversed-phase liquid chromatography and FT-ICR-MS
journal, September 2008
- Koch, Boris P.; Ludwichowski, Kai-Uwe; Kattner, Gerhard
- Marine Chemistry, Vol. 111, Issue 3-4
Global trends in the fluorescence characteristics and distribution of marine dissolved organic matter
journal, September 2011
- Jørgensen, Linda; Stedmon, Colin A.; Kragh, Theis
- Marine Chemistry, Vol. 126, Issue 1-4
Microbial structuring of marine ecosystems
journal, October 2007
- Azam, Farooq; Malfatti, Francesca
- Nature Reviews Microbiology, Vol. 5, Issue 10
High molecular weight dissolved organic matter enrichment selects for methylotrophs in dilution to extinction cultures
journal, May 2015
- Sosa, Oscar A.; Gifford, Scott M.; Repeta, Daniel J.
- The ISME Journal, Vol. 9, Issue 12
Presence of dissolved nucleotides in the North Pacific Subtropical Gyre and their role in cycling of dissolved organic phosphorus
journal, January 2005
- Björkman, Km; Karl, Dm
- Aquatic Microbial Ecology, Vol. 39
Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea
journal, August 2010
- McCarren, J.; Becker, J. W.; Repeta, D. J.
- Proceedings of the National Academy of Sciences, Vol. 107, Issue 38
Prokaryotic functional gene diversity in the sunlit ocean: Stumbling in the dark
journal, June 2015
- Ferrera, Isabel; Sebastian, Marta; Acinas, Silvia G.
- Current Opinion in Microbiology, Vol. 25
Aerobic production of methane in the sea
journal, June 2008
- Karl, David M.; Beversdorf, Lucas; Björkman, Karin M.
- Nature Geoscience, Vol. 1, Issue 7
Seasonality and vertical structure of microbial communities in an ocean gyre
journal, June 2009
- Treusch, Alexander H.; Vergin, Kevin L.; Finlay, Liam A.
- The ISME Journal, Vol. 3, Issue 10
Competition between photochemical and biological degradation of dissolved organic matter from the cyanobacteria Microcystis aeruginosa : Degradation of
journal, April 2015
- Bittar, Thais B.; Vieira, Armando A. H.; Stubbins, Aron
- Limnology and Oceanography, Vol. 60, Issue 4
Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean
journal, December 2010
- Shi, Yanmei; Tyson, Gene W.; Eppley, John M.
- The ISME Journal, Vol. 5, Issue 6
Mass spectral molecular networking of living microbial colonies
journal, May 2012
- Watrous, J.; Roach, P.; Alexandrov, T.
- Proceedings of the National Academy of Sciences, Vol. 109, Issue 26
Carbon fluxes through estuarine bacteria reflect coupling with phytoplankton
journal, August 2013
- Morán, Xag; Ducklow, Hw; Erickson, M.
- Marine Ecology Progress Series, Vol. 489
Molecular Networking and Pattern-Based Genome Mining Improves Discovery of Biosynthetic Gene Clusters and their Products from Salinispora Species
journal, April 2015
- Duncan, Katherine R.; Crüsemann, Max; Lechner, Anna
- Chemistry & Biology, Vol. 22, Issue 4
Community Genomics Among Stratified Microbial Assemblages in the Ocean's Interior
journal, January 2006
- DeLong, E. F.
- Science, Vol. 311, Issue 5760
Graphical Method for Analysis of Ultrahigh-Resolution Broadband Mass Spectra of Natural Organic Matter, the Van Krevelen Diagram
journal, October 2003
- Kim, Sunghwan; Kramer, Robert W.; Hatcher, Patrick G.
- Analytical Chemistry, Vol. 75, Issue 20
Structure and function of the global ocean microbiome
journal, May 2015
- Sunagawa, S.; Coelho, L. P.; Chaffron, S.
- Science, Vol. 348, Issue 6237
A microbial source of phosphonates in oligotrophic marine systems
journal, September 2009
- Dyhrman, Sonya T.; Benitez-Nelson, Claudia R.; Orchard, Elizabeth D.
- Nature Geoscience, Vol. 2, Issue 10
Radiocarbon in dissolved organic matter in the central North Pacific Ocean
journal, November 1987
- Williams, Peter M.; Druffel, Ellen R. M.
- Nature, Vol. 330, Issue 6145
Multiple nutrient stresses at intersecting Pacific Ocean biomes detected by protein biomarkers
journal, September 2014
- Saito, M. A.; McIlvin, M. R.; Moran, D. M.
- Science, Vol. 345, Issue 6201
Trimethylamine N-oxide metabolism by abundant marine heterotrophic bacteria
journal, February 2014
- Lidbury, I.; Murrell, J. C.; Chen, Y.
- Proceedings of the National Academy of Sciences, Vol. 111, Issue 7
Identification of the algal dimethyl sulfide-releasing enzyme: A missing link in the marine sulfur cycle
journal, June 2015
- Alcolombri, U.; Ben-Dor, S.; Feldmesser, E.
- Science, Vol. 348, Issue 6242
Characterizing dissolved organic matter fluorescence with parallel factor analysis: a tutorial: Fluorescence-PARAFAC analysis of DOM
journal, November 2008
- Stedmon, Colin A.; Bro, Rasmus
- Limnology and Oceanography: Methods, Vol. 6, Issue 11
Organic matter transformations in the upper mesopelagic zone of the North Pacific: Chemical composition and linkages to microbial community structure: ORGANIC MATTER IN THE UPPER MESOPELAGIC
journal, January 2012
- Kaiser, Karl; Benner, Ronald
- Journal of Geophysical Research: Oceans, Vol. 117, Issue C1
An intercomparison of three methods for the large-scale isolation of oceanic dissolved organic matter
journal, April 2014
- Green, Nelson W.; Perdue, E. Michael; Aiken, George R.
- Marine Chemistry, Vol. 161
Characterization of a major refractory component of marine dissolved organic matter
journal, June 2006
- Hertkorn, Norbert; Benner, Ronald; Frommberger, Moritz
- Geochimica et Cosmochimica Acta, Vol. 70, Issue 12
Release of ecologically relevant metabolites by the cyanobacterium S ynechococcus elongatus CCMP 1631 : Metabolomics of
journal, July 2015
- Fiore, Cara L.; Longnecker, Krista; Kido Soule, Melissa C.
- Environmental Microbiology, Vol. 17, Issue 10
Synthesis of Methylphosphonic Acid by Marine Microbes: A Source for Methane in the Aerobic Ocean
journal, August 2012
- Metcalf, W. W.; Griffin, B. M.; Cicchillo, R. M.
- Science, Vol. 337, Issue 6098
Transport functions dominate the SAR11 metaproteome at low-nutrient extremes in the Sargasso Sea
journal, September 2008
- Sowell, Sarah M.; Wilhelm, Larry J.; Norbeck, Angela D.
- The ISME Journal, Vol. 3, Issue 1
Microbial degradation of dissolved proteins in seawater1: Protein degradation
journal, November 1983
- Hollibaugh, J. T.; Azam, F.
- Limnology and Oceanography, Vol. 28, Issue 6
A major biopolymeric component to dissolved organic carbon in surface sea water
journal, May 1997
- Aluwihare, Lihini I.; Repeta, Daniel J.; Chen, Robert F.
- Nature, Vol. 387, Issue 6629
Insights into Secondary Metabolism from a Global Analysis of Prokaryotic Biosynthetic Gene Clusters
journal, July 2014
- Cimermancic, Peter; Medema, Marnix H.; Claesen, Jan
- Cell, Vol. 158, Issue 2
Microbial production of recalcitrant dissolved organic matter: long-term carbon storage in the global ocean
journal, July 2010
- Jiao, Nianzhi; Herndl, Gerhard J.; Hansell, Dennis A.
- Nature Reviews Microbiology, Vol. 8, Issue 8
Hidden cycle of dissolved organic carbon in the deep ocean
journal, November 2014
- Follett, Christopher L.; Repeta, Daniel J.; Rothman, Daniel H.
- Proceedings of the National Academy of Sciences, Vol. 111, Issue 47
Interaction and signalling between a cosmopolitan phytoplankton and associated bacteria
journal, May 2015
- Amin, S. A.; Hmelo, L. R.; van Tol, H. M.
- Nature, Vol. 522, Issue 7554
Determination of sugars in unconcentrated seawater and other natural waters by liquid chromatography and pulsed amperometric detection.
journal, January 1992
- Mopper, Kenneth; Schultz, Christopher A.; Chevolot, Lionel
- Environmental Science & Technology, Vol. 26, Issue 1
Potential for phosphite and phosphonate utilization by Prochlorococcus
journal, October 2011
- Feingersch, Roi; Philosof, Alon; Mejuch, Tom
- The ISME Journal, Vol. 6, Issue 4
Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean
journal, September 2011
- Swan, B. K.; Martinez-Garcia, M.; Preston, C. M.
- Science, Vol. 333, Issue 6047
Comparative metaproteomics reveals ocean-scale shifts in microbial nutrient utilization and energy transduction
journal, February 2010
- Morris, Robert M.; Nunn, Brook L.; Frazar, Christian
- The ISME Journal, Vol. 4, Issue 5
Illuminating the dark matter in metabolomics
journal, October 2015
- da Silva, Ricardo R.; Dorrestein, Pieter C.; Quinn, Robert A.
- Proceedings of the National Academy of Sciences, Vol. 112, Issue 41
Searching molecular structure databases with tandem mass spectra using CSI:FingerID
journal, September 2015
- Dührkop, Kai; Shen, Huibin; Meusel, Marvin
- Proceedings of the National Academy of Sciences, Vol. 112, Issue 41
Bacterivory and herbivory: Key roles of phagotrophic protists in pelagic food webs
journal, September 1994
- Sherr, E. B.; Sherr, B. F.
- Microbial Ecology, Vol. 28, Issue 2
Metabolic dependencies drive species co-occurrence in diverse microbial communities
journal, May 2015
- Zelezniak, Aleksej; Andrejev, Sergej; Ponomarova, Olga
- Proceedings of the National Academy of Sciences, Vol. 112, Issue 20
Molecular dissection of bacterial acrylate catabolism - unexpected links with dimethylsulfoniopropionate catabolism and dimethyl sulfide production
journal, February 2010
- Todd, Jonathan D.; Curson, Andrew R. J.; Nikolaidou-Katsaraidou, Nefeli
- Environmental Microbiology, Vol. 12, Issue 2
Aged black carbon identified in marine dissolved organic carbon: AGED BLACK CARBON IN MARINE DOC
journal, August 2010
- Ziolkowski, L. A.; Druffel, E. R. M.
- Geophysical Research Letters, Vol. 37, Issue 16
Comparative genomics and mutagenesis analyses of choline metabolism in the marine R oseobacter clade : Choline metabolism in Roseobacters
journal, August 2015
- Lidbury, Ian; Kimberley, George; Scanlan, David J.
- Environmental Microbiology, Vol. 17, Issue 12
Microbial Extracellular Enzymes and the Marine Carbon Cycle
journal, January 2011
- Arnosti, Carol
- Annual Review of Marine Science, Vol. 3, Issue 1
Climate Change Impacts on Marine Ecosystems
journal, January 2012
- Doney, Scott C.; Ruckelshaus, Mary; Emmett Duffy, J.
- Annual Review of Marine Science, Vol. 4, Issue 1
Net community production of dissolved organic carbon
journal, September 1998
- Hansell, Dennis A.; Carlson, Craig A.
- Global Biogeochemical Cycles, Vol. 12, Issue 3
Determinants of community structure in the global plankton interactome
journal, May 2015
- Lima-Mendez, G.; Faust, K.; Henry, N.
- Science, Vol. 348, Issue 6237
A multitrophic model to quantify the effects of marine viruses on microbial food webs and ecosystem processes
journal, January 2015
- Weitz, Joshua S.; Stock, Charles A.; Wilhelm, Steven W.
- The ISME Journal, Vol. 9, Issue 6
Multiyear increases in dissolved organic matter inventories at Station ALOHA in the North Pacific Subtropical Gyre
journal, January 2002
- Church, Matthew J.; Ducklow, Hugh W.; Karl, David M.
- Limnology and Oceanography, Vol. 47, Issue 1
Dissolved organic matter composition and photochemical transformations in the northern North Pacific Ocean: North Pacific Ocean DOM
journal, February 2015
- Medeiros, Patricia. M.; Seidel, Michael; Powers, Leanne C.
- Geophysical Research Letters, Vol. 42, Issue 3
Closely related phytoplankton species produce similar suites of dissolved organic matter
journal, March 2014
- Becker, Jamie W.; Berube, Paul M.; Follett, Christopher L.
- Frontiers in Microbiology, Vol. 5
Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment
journal, December 2004
- Moran, Mary Ann; Buchan, Alison; González, José M.
- Nature, Vol. 432, Issue 7019
Analysis of sulfur-related transcription by Roseobacter communities using a taxon-specific functional gene microarray: Transcription of sulfur genes by Roseobacter communities
journal, September 2010
- Rinta-Kanto, Johanna M.; Bürgmann, Helmut; Gifford, Scott M.
- Environmental Microbiology, Vol. 13, Issue 2
Radiocarbon analysis of neutral sugars in high-molecular-weight dissolved organic carbon: Implications for organic carbon cycling
journal, March 2006
- Repeta, Daniel J.; Aluwihare, Lihini I.
- Limnology and Oceanography, Vol. 51, Issue 2
Metagenomic analysis of size-fractionated picoplankton in a marine oxygen minimum zone
journal, September 2013
- Ganesh, Sangita; Parris, Darren J.; DeLong, Edward F.
- The ISME Journal, Vol. 8, Issue 1
The transcriptional response of prokaryotes to phytoplankton-derived dissolved organic matter in seawater: The response of prokaryotes to DOM in seawater
journal, May 2014
- Beier, Sara; Rivers, Adam R.; Moran, Mary Ann
- Environmental Microbiology, Vol. 17, Issue 10
Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource
journal, November 2010
- Sun, S.; Chen, J.; Li, W.
- Nucleic Acids Research, Vol. 39, Issue Database
Thermogenic organic matter dissolved in the abyssal ocean
journal, December 2006
- Dittmar, Thorsten; Koch, Boris P.
- Marine Chemistry, Vol. 102, Issue 3-4
Marine Photochemistry of Organic Matter
book, October 2014
- Mopper, Kenneth; Kieber, David J.; Stubbins, Aron
- Biogeochemistry of Marine Dissolved Organic Matter
Metagenomic Approaches for Exploiting Uncultivated Bacteria as a Resource for Novel Biosynthetic Enzymology
journal, May 2013
- Wilson, Micheal C.; Piel, Jörn
- Chemistry & Biology, Vol. 20, Issue 5
Utilization of amino acids by planktonic marine bacteria: Importance of clean technique and low substrate additions1,2: Amino acids and bacteria
journal, March 1984
- Ferguson, Randolph L.; Sunda, William G.
- Limnology and Oceanography, Vol. 29, Issue 2
Evidence for dissolved organic nitrogen and phosphorus uptake during a cyanobacterial bloom in Florida Bay
journal, January 2004
- Glibert, Pm; Heil, Ca; Hollander, D.
- Marine Ecology Progress Series, Vol. 280
The Jekyll-and-Hyde chemistry of Phaeobacter gallaeciensis
journal, February 2011
- Seyedsayamdost, Mohammad R.; Case, Rebecca J.; Kolter, Roberto
- Nature Chemistry, Vol. 3, Issue 4
Molecular mechanisms underlying roseobacter–phytoplankton symbioses
journal, June 2010
- Geng, Haifeng; Belas, Robert
- Current Opinion in Biotechnology, Vol. 21, Issue 3
The Crystal Structure of UehA in Complex with Ectoine—A Comparison with Other TRAP-T Binding Proteins
journal, May 2009
- Lecher, Justin; Pittelkow, Marco; Zobel, Silke
- Journal of Molecular Biology, Vol. 389, Issue 1
Single-taxon field measurements of bacterial gene regulation controlling DMSP fate
journal, February 2015
- Varaljay, Vanessa A.; Robidart, Julie; Preston, Christina M.
- The ISME Journal, Vol. 9, Issue 7
Genomic perspectives in microbial oceanography
journal, September 2005
- DeLong, Edward F.; Karl, David M.
- Nature, Vol. 437, Issue 7057
MetaboLights—an open-access general-purpose repository for metabolomics studies and associated meta-data
journal, October 2012
- Haug, Kenneth; Salek, Reza M.; Conesa, Pablo
- Nucleic Acids Research, Vol. 41, Issue D1
Isolation of an aerobic sulfur oxidizer from the SUP05/Arctic96BD-19 clade
journal, August 2012
- Marshall, Katharine T.; Morris, Robert M.
- The ISME Journal, Vol. 7, Issue 2
Constraining the 2-component model of marine dissolved organic radiocarbon
journal, August 2010
- Beaupré, Steven R.; Aluwihare, Lihini
- Deep Sea Research Part II: Topical Studies in Oceanography, Vol. 57, Issue 16
Ocean Warming–Acidification Synergism Undermines Dissolved Organic Matter Assembly
journal, February 2015
- Chen, Chi-Shuo; Anaya, Jesse M.; Chen, Eric Y-T
- PLOS ONE, Vol. 10, Issue 2
SAR11 marine bacteria require exogenous reduced sulphur for growth
journal, March 2008
- Tripp, H. James; Kitner, Joshua B.; Schwalbach, Michael S.
- Nature, Vol. 452, Issue 7188
Mass spectrometry of natural products: current, emerging and future technologies
journal, January 2014
- Bouslimani, Amina; Sanchez, Laura M.; Garg, Neha
- Natural Product Reports, Vol. 31, Issue 6
Direct use of high molecular weight polysaccharide by heterotrophic flagellates
journal, September 1988
- Sherr, Evelyn B.
- Nature, Vol. 335, Issue 6188
Evidence for quorum sensing and differential metabolite production by a marine bacterium in response to DMSP
journal, February 2016
- Johnson, Winifred M.; Kido Soule, Melissa C.; Kujawinski, Elizabeth B.
- The ISME Journal, Vol. 10, Issue 9
Marine Microbes See a Sea of Gradients
journal, November 2012
- Stocker, R.
- Science, Vol. 338, Issue 6107
Bifurcated Degradative Pathway of 3-Sulfolactate in Roseovarius nubinhibens ISM via Sulfoacetaldehyde Acetyltransferase and (S)-Cysteate Sulfolyase
journal, July 2009
- Denger, K.; Mayer, J.; Buhmann, M.
- Journal of Bacteriology, Vol. 191, Issue 18
Get the most out of your metagenome: computational analysis of environmental sequence data
journal, October 2007
- Raes, Jeroen; Foerstner, Konrad Ulrich; Bork, Peer
- Current Opinion in Microbiology, Vol. 10, Issue 5
Annual flux of dissolved organic carbon from the euphotic zone in the northwestern Sargasso Sea
journal, September 1994
- Carlson, Craig A.; Ducklow, Hugh W.; Michaels, Anthony F.
- Nature, Vol. 371, Issue 6496
Viral lysis of Phaeocystis pouchetii: Implications for algal population dynamics and heterotrophic C, N and P cycling
journal, January 2009
- Haaber, Jakob; Middelboe, Mathias
- The ISME Journal, Vol. 3, Issue 4
Cryptic carbon and sulfur cycling between surface ocean plankton
journal, December 2014
- Durham, Bryndan P.; Sharma, Shalabh; Luo, Haiwei
- Proceedings of the National Academy of Sciences, Vol. 112, Issue 2
Genomic and functional adaptation in surface ocean planktonic prokaryotes
journal, November 2010
- Yooseph, Shibu; Nealson, Kenneth H.; Rusch, Douglas B.
- Nature, Vol. 468, Issue 7320
Detection of glycolate oxidase gene glcD diversity among cultured and environmental marine bacteria
journal, October 2006
- Lau, W. W. Y.; Armbrust, E. V.
- Environmental Microbiology, Vol. 8, Issue 10
Genome Streamlining in a Cosmopolitan Oceanic Bacterium
journal, August 2005
- Giovannoni, S. J.
- Science, Vol. 309, Issue 5738
Microbial uptake of dissolved organic matter in Mcmurdo Sound, Antarctica
journal, January 1981
- Hodson, R. E.; Azam, F.; Carlucci, A. F.
- Marine Biology, Vol. 61, Issue 2-3
A heat-induced molecular signature in marine dissolved organic matter
journal, February 2009
- Dittmar, Thorsten; Paeng, Jiyoung
- Nature Geoscience, Vol. 2, Issue 3
Substrate-Controlled Succession of Marine Bacterioplankton Populations Induced by a Phytoplankton Bloom
journal, May 2012
- Teeling, H.; Fuchs, B. M.; Becher, D.
- Science, Vol. 336, Issue 6081
The alkaline phosphatase PhoX is more widely distributed in marine bacteria than the classical PhoA
journal, February 2009
- Sebastian, Marta; Ammerman, James W.
- The ISME Journal, Vol. 3, Issue 5
Sulphoglycolysis in Escherichia coli K-12 closes a gap in the biogeochemical sulphur cycle
journal, January 2014
- Denger, Karin; Weiss, Michael; Felux, Ann-Katrin
- Nature, Vol. 507, Issue 7490
The organic complexation of iron in the marine environment: a review
journal, January 2012
- Gledhill, Martha
- Frontiers in Microbiology, Vol. 3
Single bacterial strain capable of significant contribution to carbon cycling in the surface ocean
journal, April 2014
- Pedler, B. E.; Aluwihare, L. I.; Azam, F.
- Proceedings of the National Academy of Sciences, Vol. 111, Issue 20
Viral lysis of Micromonas pusilla: impacts on dissolved organic matter production and composition
journal, April 2013
- Lønborg, Christian; Middelboe, Mathias; Brussaard, Corina P. D.
- Biogeochemistry, Vol. 116, Issue 1-3
Ocean's least productive waters are expanding
journal, January 2008
- Polovina, Jeffrey J.; Howell, Evan A.; Abecassis, Melanie
- Geophysical Research Letters, Vol. 35, Issue 3
Dilution limits dissolved organic carbon utilization in the deep ocean
journal, March 2015
- Arrieta, J. M.; Mayol, E.; Hansman, R. L.
- Science, Vol. 348, Issue 6232
Stimulated Bacterial Growth under Elevated pCO2: Results from an Off-Shore Mesocosm Study
journal, June 2014
- Endres, Sonja; Galgani, Luisa; Riebesell, Ulf
- PLoS ONE, Vol. 9, Issue 6
Effects of ocean acidification on marine dissolved organic matter are not detectable over the succession of phytoplankton blooms
journal, October 2015
- Zark, Maren; Riebesell, Ulf; Dittmar, Thorsten
- Science Advances, Vol. 1, Issue 9
Refining 31P nuclear magnetic resonance spectroscopy for marine particulate samples: Storage conditions and extraction recovery
journal, December 2005
- Cade-Menun, Barbara J.; Benitez-Nelson, Claudia R.; Pellechia, Perry
- Marine Chemistry, Vol. 97, Issue 3-4
Phage infection of an environmentally relevant marine bacterium alters host metabolism and lysate composition
journal, December 2013
- Ankrah, Nana Yaw D.; May, Amanda L.; Middleton, Jesse L.
- The ISME Journal, Vol. 8, Issue 5
Gene-centric approach to integrating environmental genomics and biogeochemical models
journal, January 2014
- Reed, Daniel C.; Algar, Christopher K.; Huber, Julie A.
- Proceedings of the National Academy of Sciences, Vol. 111, Issue 5
Natural Organic Matter and the Event Horizon of Mass Spectrometry
journal, December 2008
- Hertkorn, N.; Frommberger, M.; Witt, M.
- Analytical Chemistry, Vol. 80, Issue 23
A new class of homoserine lactone quorum-sensing signals
journal, June 2008
- Schaefer, Amy L.; Greenberg, E. P.; Oliver, Colin M.
- Nature, Vol. 454, Issue 7204
Expression patterns reveal niche diversification in a marine microbial assemblage
journal, August 2012
- Gifford, Scott M.; Sharma, Shalabh; Booth, Melissa
- The ISME Journal, Vol. 7, Issue 2
Metabolism of dimethylsulfoniopropionate and glycine betaine by a marine bacterium
journal, September 1992
- Diaz, Mara R.; Visscher, Pieter T.; Taylor, Barrie F.
- FEMS Microbiology Letters, Vol. 96, Issue 1
High abundance of virulence gene homologues in marine bacteria
journal, June 2009
- Persson, Olof P.; Pinhassi, Jarone; Riemann, Lasse
- Environmental Microbiology, Vol. 11, Issue 6
Chitinases from Uncultured Marine Microorganisms
journal, June 1999
- Cottrell, Matthew T.; Moore, Jessica A.; Kirchman, David L.
- Applied and Environmental Microbiology, Vol. 65, Issue 6
Works referencing / citing this record:
Impact of CO 2 on the elemental composition of the particulate and dissolved organic matter of marine diatoms emerged after nitrate depletion
journal, April 2018
- Sugie, Koji; Yoshimura, Takeshi; Wakita, Masahide
- Limnology and Oceanography, Vol. 63, Issue 5
Time‐series metatranscriptomes reveal conserved patterns between phototrophic and heterotrophic microbes in diverse freshwater systems
journal, January 2020
- Linz, Alexandra M.; Aylward, Frank O.; Bertilsson, Stefan
- Limnology and Oceanography, Vol. 65, Issue S1
Interactive effects on organic matter processing from soils to the ocean: are priming effects relevant in aquatic ecosystems?
journal, June 2018
- Bengtsson, Mia M.; Attermeyer, Katrin; Catalán, Núria
- Hydrobiologia, Vol. 822, Issue 1
Metabolome response to anthropogenic contamination on microalgae: a review
journal, December 2019
- Gauthier, Léa; Tison-Rosebery, Juliette; Morin, Soizic
- Metabolomics, Vol. 16, Issue 1
Dissolved Organic Matter Composition in a Marsh‐Dominated Estuary: Response to Seasonal Forcing and to the Passage of a Hurricane
journal, June 2019
- Letourneau, Maria L.; Medeiros, Patricia M.
- Journal of Geophysical Research: Biogeosciences, Vol. 124, Issue 6
Coordinated gene expression between Trichodesmium and its microbiome over day–night cycles in the North Pacific Subtropical Gyre
journal, January 2018
- Frischkorn, Kyle R.; Haley, Sheean T.; Dyhrman, Sonya T.
- The ISME Journal, Vol. 12, Issue 4
Universal molecular structures in natural dissolved organic matter
journal, August 2018
- Zark, Maren; Dittmar, Thorsten
- Nature Communications, Vol. 9, Issue 1
Impact of Anthropogenic Organic Matter on the Distribution Patterns of Sediment Microbial Community from the Yangtze River, China
journal, July 2019
- Zhang, Kai; He, Ding; Cui, Xingqian
- Geomicrobiology Journal, Vol. 36, Issue 10
Genomic reconstructions and potential metabolic strategies of generalist and specialist heterotrophic bacteria associated with an estuary Synechococcus culture
journal, January 2019
- Zheng, Qiang; Lu, Jiayao; Wang, Yu
- FEMS Microbiology Ecology, Vol. 95, Issue 3
Unveiling the enigma of refractory carbon in the ocean
journal, February 2018
- Jiao, Nianzhi; Cai, Ruanhong; Zheng, Qiang
- National Science Review, Vol. 5, Issue 4
Evolving paradigms in biological carbon cycling in the ocean
journal, July 2018
- Zhang, Chuanlun; Dang, Hongyue; Azam, Farooq
- National Science Review, Vol. 5, Issue 4
Alpha- and beta-mannan utilization by marine Bacteroidetes: Marine mannan utilization
journal, October 2018
- Chen, Jing; Robb, Craig S.; Unfried, Frank
- Environmental Microbiology, Vol. 20, Issue 11
Microbial responses to anthropogenic dissolved organic carbon in the Arctic and Antarctic coastal seawaters
journal, March 2019
- Cerro‐Gálvez, Elena; Casal, Paulo; Lundin, Daniel
- Environmental Microbiology, Vol. 21, Issue 4
Ammonia‐oxidizing archaea release a suite of organic compounds potentially fueling prokaryotic heterotrophy in the ocean
journal, August 2019
- Bayer, Barbara; Hansman, Roberta L.; Bittner, Meriel J.
- Environmental Microbiology, Vol. 21, Issue 11
The microbial contribution to reactive oxygen species dynamics in marine ecosystems: Abiotic and biotic sources and sinks of ROS
journal, March 2018
- Zinser, Erik R.
- Environmental Microbiology Reports, Vol. 10, Issue 4
On-Site Analysis of Bacterial Communities of the Ultraoligotrophic South Pacific Gyre
journal, May 2019
- Reintjes, Greta; Tegetmeyer, Halina E.; Bürgisser, Miriam
- Applied and Environmental Microbiology, Vol. 85, Issue 14
Accurate Quantification of Laminarin in Marine Organic Matter with Enzymes from Marine Microbes
journal, February 2017
- Becker, Stefan; Scheffel, André; Polz, Martin F.
- Applied and Environmental Microbiology, Vol. 83, Issue 9
Marine Metabolomics: a Method for Nontargeted Measurement of Metabolites in Seawater by Gas Chromatography–Mass Spectrometry
journal, December 2019
- Sogin, Emilia M.; Puskás, Erik; Dubilier, Nicole
- mSystems, Vol. 4, Issue 6
Ocean Acidification Experiments in Large-Scale Mesocosms Reveal Similar Dynamics of Dissolved Organic Matter Production and Biotransformation
journal, September 2017
- Zark, Maren; Broda, Nadine K.; Hornick, Thomas
- Frontiers in Marine Science, Vol. 4
Dissection of Microbial Community Functions during a Cyanobacterial Bloom in the Baltic Sea via Metatranscriptomics
journal, February 2018
- Berg, Carlo; Dupont, Chris L.; Asplund-Samuelsson, Johannes
- Frontiers in Marine Science, Vol. 5
Marine Bacterial Diversity in Coastal Sichang Island, the Upper Gulf of Thailand, in 2011 Wet Season
journal, June 2019
- Somboonna, Naraporn; Wilantho, Alisa; Rerngsamran, Panan
- Frontiers in Marine Science, Vol. 6
Characterization of bacterioplankton communities and quantification of organic carbon pools off the Galapagos Archipelago under contrasting environmental conditions
journal, January 2018
- Guevara Campoverde, Nataly Carolina; Hassenrück, Christiane; Buttigieg, Pier Luigi
- PeerJ, Vol. 6
Seagrass‐associated fungal communities show distance decay of similarity that has implications for seagrass management and restoration
journal, September 2019
- Wainwright, Benjamin J.; Zahn, Geoffrey L.; Zushi, Joshua
- Ecology and Evolution, Vol. 9, Issue 19
Tree‐DOM: Dissolved organic matter in throughfall and stemflow
journal, February 2018
- Van Stan, John T.; Stubbins, Aron
- Limnology and Oceanography Letters, Vol. 3, Issue 3
Resource heterogeneity structures aquatic bacterial communities
journal, May 2019
- Muscarella, Mario E.; Boot, Claudia M.; Broeckling, Corey D.
- The ISME Journal, Vol. 13, Issue 9
Significance estimation for large scale metabolomics annotations by spectral matching
journal, November 2017
- Scheubert, Kerstin; Hufsky, Franziska; Petras, Daniel
- Nature Communications, Vol. 8, Issue 1
Dissolved organic matter uptake by Trichodesmium in the Southwest Pacific
journal, January 2017
- Benavides, Mar; Berthelot, Hugo; Duhamel, Solange
- Scientific Reports, Vol. 7, Issue 1
Ecological drivers of bacterial community assembly in synthetic phycospheres
journal, February 2020
- Fu, He; Uchimiya, Mario; Gore, Jeff
- Proceedings of the National Academy of Sciences, Vol. 117, Issue 7
Cross‐protection from hydrogen peroxide by helper microbes: the impacts on the cyanobacterium Prochlorococcus and other beneficiaries in marine communities
journal, February 2018
- Zinser, Erik R.
- Environmental Microbiology Reports, Vol. 10, Issue 4
Dissolved organic sulfur in the ocean: Biogeochemistry of a petagram inventory
journal, October 2016
- Ksionzek, K. B.; Lechtenfeld, O. J.; McCallister, S. L.
- Science, Vol. 354, Issue 6311
Where Carbon Goes When Water Flows: Carbon Cycling across the Aquatic Continuum
journal, January 2017
- Ward, Nicholas D.; Bianchi, Thomas S.; Medeiros, Patricia M.
- Frontiers in Marine Science, Vol. 4
Formation of Chromophoric Dissolved Organic Matter by Bacterial Degradation of Phytoplankton-Derived Aggregates
journal, January 2018
- Kinsey, Joanna D.; Corradino, Gabrielle; Ziervogel, Kai
- Frontiers in Marine Science, Vol. 4
Large Diversity and Original Structures of Acyl-Homoserine Lactones in Strain MOLA 401, a Marine Rhodobacteraceae Bacterium
journal, June 2017
- Doberva, Margot; Stien, Didier; Sorres, Jonathan
- Frontiers in Microbiology, Vol. 8
Ecological Energetic Perspectives on Responses of Nitrogen-Transforming Chemolithoautotrophic Microbiota to Changes in the Marine Environment
journal, July 2017
- Dang, Hongyue; Chen, Chen-Tung A.
- Frontiers in Microbiology, Vol. 8
Mixotrophic metabolism by natural communities of unicellular cyanobacteria in the western tropical South Pacific Ocean
text, January 2018
- Duhamel, Solange; Van Wambeke, France; Lefevre, Dominique
- Columbia University
Crustacean zooplankton release copious amounts of dissolved organic matter as taurine in the ocean: Dissolved free taurine in oceanic waters
journal, June 2017
- Clifford, Elisabeth L.; Hansell, Dennis A.; Varela, Marta M.
- Limnology and Oceanography, Vol. 62, Issue 6
Fluorescent organic exudates of corals and algae in tropical reefs are compositionally distinct and increase with nutrient enrichment
journal, March 2018
- Quinlan, Zachary A.; Remple, Kristina; Fox, Michael D.
- Limnology and Oceanography Letters, Vol. 3, Issue 4
Molecular characteristics of microbially mediated transformations of Synechococcus ‐derived dissolved organic matter as revealed by incubation experiments
journal, May 2019
- Zheng, Qiang; Chen, Qi; Cai, Ruanhong
- Environmental Microbiology, Vol. 21, Issue 7
Dissolved organic matter uptake by Trichodesmium in the Southwest Pacific
text, January 2017
- Benavides, Mar; Berthelot, Hugo; Duhamel, Solange
- Columbia University
The role of differential DMSP production and community composition in predicting variability of global surface DMSP concentrations
journal, October 2018
- McParland, Erin L.; Levine, Naomi M.
- Limnology and Oceanography, Vol. 64, Issue 2
Isotopic composition of oceanic dissolved black carbon reveals non-riverine source
journal, November 2019
- Wagner, Sasha; Brandes, Jay; Spencer, Robert G. M.
- Nature Communications, Vol. 10, Issue 1
Mixotrophic metabolism by natural communities of unicellular cyanobacteria in the western tropical South Pacific Ocean: Mixotrophy in natural marine cyanobacteria
journal, April 2018
- Duhamel, Solange; Van Wambeke, France; Lefevre, Dominique
- Environmental Microbiology, Vol. 20, Issue 8
Toward a Regional Classification to Provide a More Inclusive Examination of the Ocean Biogeochemistry of Iron-Binding Ligands
journal, February 2017
- Hassler, Christel S.; van den Berg, Constant M. G.; Boyd, Philip W.
- Frontiers in Marine Science, Vol. 4
High-Resolution Liquid Chromatography Tandem Mass Spectrometry Enables Large Scale Molecular Characterization of Dissolved Organic Matter
journal, December 2017
- Petras, Daniel; Koester, Irina; Da Silva, Ricardo
- Frontiers in Marine Science, Vol. 4
Selfish, sharing and scavenging bacteria in the Atlantic Ocean: a biogeographical study of bacterial substrate utilisation
journal, December 2018
- Reintjes, Greta; Arnosti, Carol; Fuchs, B.
- The ISME Journal, Vol. 13, Issue 5
A New Glider-Compatible Optical Sensor for Dissolved Organic Matter Measurements: Test Case from the NW Mediterranean Sea
journal, March 2017
- Cyr, Frédéric; Tedetti, Marc; Besson, Florent
- Frontiers in Marine Science, Vol. 4
Global Observing Needs in the Deep Ocean
journal, May 2019
- Levin, Lisa A.; Bett, Brian J.; Gates, Andrew R.
- Frontiers in Marine Science, Vol. 6
Relationship between dissolved organic matter quality and microbial community composition across polar glacial environments
journal, May 2018
- Smith, Hj; Dieser, M.; McKnight, Dm
- FEMS Microbiology Ecology, Vol. 94, Issue 7
Seagrass‐associated fungal communities show distance decay of similarity that has implications for seagrass management and restoration
journal, September 2019
- Wainwright, Benjamin J.; Zahn, Geoffrey L.; Zushi, Joshua
- Ecology and Evolution, Vol. 9, Issue 19
Universal molecular structures in natural dissolved organic matter
journal, August 2018
- Zark, Maren; Dittmar, Thorsten
- Nature Communications, Vol. 9, Issue 1
Isotopic composition of oceanic dissolved black carbon reveals non-riverine source
journal, November 2019
- Wagner, Sasha; Brandes, Jay; Spencer, Robert G. M.
- Nature Communications, Vol. 10, Issue 1
Ecosystem-wide metagenomic binning enables prediction of ecological niches from genomes
journal, March 2020
- Alneberg, Johannes; Bennke, Christin; Beier, Sara
- Communications Biology, Vol. 3, Issue 1
Ecological drivers of bacterial community assembly in synthetic phycospheres
journal, February 2020
- Fu, He; Uchimiya, Mario; Gore, Jeff
- Proceedings of the National Academy of Sciences, Vol. 117, Issue 7
Ancestral Function and Diversification of a Horizontally Acquired Oomycete Carboxylic Acid Transporter
journal, April 2018
- Savory, Fiona R.; Milner, David S.; Miles, Daniel C.
- Molecular Biology and Evolution, Vol. 35, Issue 8
Marine Metabolomics: a Method for Nontargeted Measurement of Metabolites in Seawater by Gas Chromatography–Mass Spectrometry
journal, December 2019
- Sogin, Emilia M.; Puskás, Erik; Dubilier, Nicole
- mSystems, Vol. 4, Issue 6
Selfish, sharing and scavenging bacteria in the Atlantic Ocean: a biogeographical study of bacterial substrate utilisation
text, January 2019
- G., Reintjes,; B., Fuchs,; C., Arnosti,
- Nature Publishing Group
Microbially-Mediated Transformations of Estuarine Dissolved Organic Matter
journal, March 2017
- Medeiros, Patricia M.; Seidel, Michael; Gifford, Scott M.
- Frontiers in Marine Science, Vol. 4
Ecological Energetic Perspectives on Responses of Nitrogen-Transforming Chemolithoautotrophic Microbiota to Changes in the Marine Environment
journal, July 2017
- Dang, Hongyue; Chen, Chen-Tung A.
- Frontiers in Microbiology, Vol. 8
Characterization of bacterioplankton communities and quantification of organic carbon pools off the Galapagos Archipelago under contrasting environmental conditions
journal, January 2018
- Guevara Campoverde, Nataly Carolina; Hassenrück, Christiane; Buttigieg, Pier Luigi
- PeerJ, Vol. 6