Contributions of immunoaffinity chromatography to deep proteome profiling of human biofluids
Abstract
Human biofluids, especially blood plasma or serum, hold great potential as the sources of candidate biomarkers for various diseases; however, the enormous dynamic range of protein concentrations in biofluids represents a significant analytical challenge for detecting promising low-abundance proteins. Over the last decade, various immunoaffinity chromatographic methods have been developed and routinely applied for separating low-abundance proteins from the high- and moderate-abundance proteins, thus enabling much more effective detection of low-abundance proteins. Herein, we review the advances of immunoaffinity separation methods and their contributions to the proteomic applications in human biofluids. The limitations and future perspectives of immunoaffinity separation methods are also discussed.
- Authors:
-
- Pacific Northwest National Lab. (PNNL), Richland, WA (United States)
- Publication Date:
- Research Org.:
- Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)
- Sponsoring Org.:
- USDOE
- OSTI Identifier:
- 1251560
- Report Number(s):
- PNNL-SA-112289
Journal ID: ISSN 1570-0232; PII: S1570023216300150
- Grant/Contract Number:
- AC05-76RL01830
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Journal of Chromatography. B
- Additional Journal Information:
- Journal Volume: 1021; Journal Issue: C; Journal ID: ISSN 1570-0232
- Publisher:
- Elsevier
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; biofluid; immunoaffinity chromatography; plasma/serum; immunodepletion; immunoenrichment; biomarker discovery; proteomics; affinity proteomics
Citation Formats
Wu, Chaochao, Duan, Jicheng, Liu, Tao, Smith, Richard D., and Qian, Wei -Jun. Contributions of immunoaffinity chromatography to deep proteome profiling of human biofluids. United States: N. p., 2016.
Web. doi:10.1016/j.jchromb.2016.01.015.
Wu, Chaochao, Duan, Jicheng, Liu, Tao, Smith, Richard D., & Qian, Wei -Jun. Contributions of immunoaffinity chromatography to deep proteome profiling of human biofluids. United States. https://doi.org/10.1016/j.jchromb.2016.01.015
Wu, Chaochao, Duan, Jicheng, Liu, Tao, Smith, Richard D., and Qian, Wei -Jun. Tue .
"Contributions of immunoaffinity chromatography to deep proteome profiling of human biofluids". United States. https://doi.org/10.1016/j.jchromb.2016.01.015. https://www.osti.gov/servlets/purl/1251560.
@article{osti_1251560,
title = {Contributions of immunoaffinity chromatography to deep proteome profiling of human biofluids},
author = {Wu, Chaochao and Duan, Jicheng and Liu, Tao and Smith, Richard D. and Qian, Wei -Jun},
abstractNote = {Human biofluids, especially blood plasma or serum, hold great potential as the sources of candidate biomarkers for various diseases; however, the enormous dynamic range of protein concentrations in biofluids represents a significant analytical challenge for detecting promising low-abundance proteins. Over the last decade, various immunoaffinity chromatographic methods have been developed and routinely applied for separating low-abundance proteins from the high- and moderate-abundance proteins, thus enabling much more effective detection of low-abundance proteins. Herein, we review the advances of immunoaffinity separation methods and their contributions to the proteomic applications in human biofluids. The limitations and future perspectives of immunoaffinity separation methods are also discussed.},
doi = {10.1016/j.jchromb.2016.01.015},
journal = {Journal of Chromatography. B},
number = C,
volume = 1021,
place = {United States},
year = {Tue Jan 12 00:00:00 EST 2016},
month = {Tue Jan 12 00:00:00 EST 2016}
}
Web of Science
Works referenced in this record:
Human body fluid proteome analysis
journal, December 2006
- Hu, Shen; Loo, Joseph A.; Wong, David T.
- PROTEOMICS, Vol. 6, Issue 23
The Clinical Plasma Proteome: A Survey of Clinical Assays for Proteins in Plasma and Serum
journal, November 2009
- Anderson, N. L.
- Clinical Chemistry, Vol. 56, Issue 2
The Human Plasma Proteome: History, Character, and Diagnostic Prospects
journal, October 2002
- Anderson, N. Leigh; Anderson, Norman G.
- Molecular & Cellular Proteomics, Vol. 1, Issue 11
Utilizing Human Blood Plasma for Proteomic Biomarker Discovery †
journal, August 2005
- Jacobs, Jon M.; Adkins, Joshua N.; Qian, Wei-Jun
- Journal of Proteome Research, Vol. 4, Issue 4
Mining the plasma proteome for cancer biomarkers
journal, April 2008
- Hanash, Samir M.; Pitteri, Sharon J.; Faca, Vitor M.
- Nature, Vol. 452, Issue 7187
Protein biomarker discovery and validation: the long and uncertain path to clinical utility
journal, August 2006
- Rifai, Nader; Gillette, Michael A.; Carr, Steven A.
- Nature Biotechnology, Vol. 24, Issue 8
Body Fluid Proteomics for Biomarker Discovery: Lessons from the Past Hold the Key to Success in the Future
journal, October 2007
- Good, David M.; Thongboonkerd, Visith; Novak, Jan
- Journal of Proteome Research, Vol. 6, Issue 12
Advances in Urinary Proteome Analysis and Biomarker Discovery
journal, February 2007
- Fliser, Danilo; Novak, Jan; Thongboonkerd, Visith
- Journal of the American Society of Nephrology, Vol. 18, Issue 4
Recommendations for Biomarker Identification and Qualification in Clinical Proteomics
journal, August 2010
- Mischak, H.; Allmaier, G.; Apweiler, R.
- Science Translational Medicine, Vol. 2, Issue 46
Advances in urinary proteome analysis and biomarker discovery in pediatric renal disease
journal, January 2010
- Caubet, Cécile; Lacroix, Chrystelle; Decramer, Stéphane
- Pediatric Nephrology, Vol. 25, Issue 1
Urine as a source for clinical proteome analysis: From discovery to clinical application
journal, May 2014
- Rodríguez-Suárez, Eva; Siwy, Justyna; Zürbig, Petra
- Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, Vol. 1844, Issue 5
Urine Collection and Processing for Protein Biomarker Discovery and Quantification
journal, March 2010
- Thomas, C. Eric; Sexton, Wade; Benson, Kaaron
- Cancer Epidemiology Biomarkers & Prevention, Vol. 19, Issue 4
Salivary diagnostics powered by nanotechnologies, proteomics and genomics
journal, March 2006
- Wong, David T.
- The Journal of the American Dental Association, Vol. 137, Issue 3
Label-Free Biochemical Analytic Method for the Early Detection of Adenoviral Conjunctivitis Using Human Tear Biofluids
journal, October 2014
- Choi, Samjin; Moon, Sung Woon; Shin, Jae-Ho
- Analytical Chemistry, Vol. 86, Issue 22
Cerebrospinal Fluid Biomarkers for Alzheimer's Disease
journal, August 2009
- Blennow, Kaj; Zetterberg, Henrik
- Journal of Alzheimer's Disease, Vol. 18, Issue 2
Immunoaffinity chromatography: an introduction to applications and recent developments
journal, April 2010
- Moser, Annette C.; Hage, David S.
- Bioanalysis, Vol. 2, Issue 4
Affinity separation and enrichment methods in proteomic analysis
journal, August 2008
- Fang, Xiangming; Zhang, Wei-Wei
- Journal of Proteomics, Vol. 71, Issue 3
Advances and Challenges in Liquid Chromatography-Mass Spectrometry-based Proteomics Profiling for Clinical Applications
journal, October 2006
- Qian, Wei-Jun; Jacobs, Jon M.; Liu, Tao
- Molecular & Cellular Proteomics, Vol. 5, Issue 10
Enhanced Detection of Low Abundance Human Plasma Proteins Using a Tandem IgY12-SuperMix Immunoaffinity Separation Strategy
journal, July 2008
- Qian, Wei-Jun; Kaleta, David T.; Petritis, Brianne O.
- Molecular & Cellular Proteomics, Vol. 7, Issue 10
Immunoaffinity Enrichment and Liquid Chromatography-Selected Reaction Monitoring Mass Spectrometry for Quantitation of Carbonic Anhydrase 12 in Cultured Renal Carcinoma Cells
journal, November 2010
- Rafalko, Agnes; Iliopoulos, Othon; Fusaro, Vincent A.
- Analytical Chemistry, Vol. 82, Issue 21
Affinity Depletion of Plasma and Serum for Mass Spectrometry-Based Proteome Analysis
book, January 2013
- Jaros, Julian A. J.; Guest, Paul C.; Bahn, Sabine
- Methods in Molecular Biology
Mass Spectrometric Quantitation of Peptides and Proteins Using Stable Isotope Standards and Capture by Anti-Peptide Antibodies (SISCAPA)
journal, April 2004
- Anderson, N. Leigh; Anderson, Norman G.; Haines, Lee R.
- Journal of Proteome Research, Vol. 3, Issue 2
Interlaboratory Evaluation of Automated, Multiplexed Peptide Immunoaffinity Enrichment Coupled to Multiple Reaction Monitoring Mass Spectrometry for Quantifying Proteins in Plasma
journal, December 2011
- Kuhn, Eric; Whiteaker, Jeffrey R.; Mani, D. R.
- Molecular & Cellular Proteomics, Vol. 11, Issue 6
Critical Steps in the Production of Polyclonal and Monoclonal Antibodies: Evaluation and Recommendations
journal, January 2005
- Leenaars, M.; Hendriksen, C. F. M.
- ILAR Journal, Vol. 46, Issue 3
SISCAPA Peptide Enrichment on Magnetic Beads Using an In-line Bead Trap Device
journal, May 2009
- Anderson, N. Leigh; Jackson, Angela; Smith, Derek
- Molecular & Cellular Proteomics, Vol. 8, Issue 5
Latest technologies for the enhancement of antibody affinity
journal, August 2006
- Wark, Kim L.; Hudson, Peter J.
- Advanced Drug Delivery Reviews, Vol. 58, Issue 5-6
Automated screening of monoclonal antibodies for SISCAPA assays using a magnetic bead processor and liquid chromatography-selected reaction monitoring-mass spectrometry
journal, February 2010
- Schoenherr, Regine M.; Zhao, Lei; Whiteaker, Jeffrey R.
- Journal of Immunological Methods, Vol. 353, Issue 1-2
Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae
journal, March 2002
- Ficarro, Scott B.; McCleland, Mark L.; Stukenberg, P. Todd
- Nature Biotechnology, Vol. 20, Issue 3
Phosphopeptide enrichment using metal oxide affinity chromatography
journal, February 2010
- Leitner, Alexander
- TrAC Trends in Analytical Chemistry, Vol. 29, Issue 2
Combination of Abundant Protein Depletion and Multi-Lectin Affinity Chromatography (M-LAC) for Plasma Protein Biomarker Discovery
journal, February 2007
- Plavina, Tatiana; Wakshull, Eric; Hancock, William S.
- Journal of Proteome Research, Vol. 6, Issue 2
Aptamer affinity chromatography:
journal, August 1999
- Romig, Timothy S.; Bell, Carol; Drolet, Daniel W.
- Journal of Chromatography B: Biomedical Sciences and Applications, Vol. 731, Issue 2
Immunoaffinity separation of plasma proteins by IgY microbeads: Meeting the needs of proteomic sample preparation and analysis
journal, August 2005
- Huang, Lei; Harvie, Gulia; Feitelson, Jerald S.
- PROTEOMICS, Vol. 5, Issue 13
Differences among techniques for high-abundant protein depletion
journal, August 2005
- Zolotarjova, Nina; Martosella, James; Nicol, Gordon
- PROTEOMICS, Vol. 5, Issue 13
Multi-component immunoaffinity subtraction chromatography: An innovative step towards a comprehensive survey of the human plasma proteome
journal, April 2003
- Pieper, Rembert; Su, Qin; Gatlin, Christine L.
- PROTEOMICS, Vol. 3, Issue 4
Evaluation of Multiprotein Immunoaffinity Subtraction for Plasma Proteomics and Candidate Biomarker Discovery Using Mass Spectrometry
journal, July 2006
- Liu, Tao; Qian, Wei-Jun; Mottaz, Heather M.
- Molecular & Cellular Proteomics, Vol. 5, Issue 11
IgY14 and SuperMix immunoaffinity separations coupled with liquid chromatography–mass spectrometry for human plasma proteomics biomarker discovery
journal, February 2012
- Shi, Tujin; Zhou, Jian-Ying; Gritsenko, Marina A.
- Methods, Vol. 56, Issue 2
Depletion efficiency and recovery of trace markers from a multiparameter immunodepletion column
journal, June 2006
- Brand, Joachim; Haslberger, Tobias; Zolg, Werner
- PROTEOMICS, Vol. 6, Issue 11
Effect of Immunoaffinity Depletion of Human Serum during Proteomic Investigations
journal, October 2005
- Yocum, Anastasia K.; Yu, Kenneth; Oe, Tomoyuki
- Journal of Proteome Research, Vol. 4, Issue 5
Depletion of multiple high-abundance proteins improves protein profiling capacities of human serum and plasma
journal, August 2005
- Echan, Lynn A.; Tang, Hsin-Yao; Ali-Khan, Nadeem
- PROTEOMICS, Vol. 5, Issue 13
Sepsis Plasma Protein Profiling with Immunodepletion, Three-Dimensional Liquid Chromatography Tandem Mass Spectrometry, and Spectrum Counting
journal, November 2006
- Shen, Zhouxin; Want, Elizabeth J.; Chen, Wei
- Journal of Proteome Research, Vol. 5, Issue 11
Intact-protein-based High-resolution Three-dimensional Quantitative Analysis System for Proteome Profiling of Biological Fluids
journal, May 2005
- Wang, Hong; Clouthier, Shawn G.; Galchev, Vladimir
- Molecular & Cellular Proteomics, Vol. 4, Issue 5
Depletion of Abundant Plasma Proteins and Limitations of Plasma Proteomics
journal, October 2010
- Tu, Chengjian; Rudnick, Paul A.; Martinez, Misti Y.
- Journal of Proteome Research, Vol. 9, Issue 10
Combination of affinity depletion of abundant proteins and reversed-phase fractionation in proteomic analysis of human plasma/serum
journal, May 2008
- Zolotarjova, Nina; Mrozinski, Peter; Chen, Haiying
- Journal of Chromatography A, Vol. 1189, Issue 1-2
A Proteomic Approach for Plasma Biomarker Discovery with iTRAQ Labelling and OFFGEL Fractionation
journal, January 2010
- Ernoult, Emilie; Bourreau, Anthony; Gamelin, Erick
- Journal of Biomedicine and Biotechnology, Vol. 2010
Additions to the Human Plasma Proteome via a Tandem MARS Depletion iTRAQ-Based Workflow
journal, February 2013
- Cao, Zhiyun; Yende, Sachin; Kellum, John A.
- International Journal of Proteomics, Vol. 2013
Optimizing Performance of Glycopeptide Capture for Plasma Proteomics
journal, March 2010
- Berven, Frode S.; Ahmad, Rushdy; Clauser, Karl R.
- Journal of Proteome Research, Vol. 9, Issue 4
Prediction of high-responding peptides for targeted protein assays by mass spectrometry
journal, January 2009
- Fusaro, Vincent A.; Mani, D. R.; Mesirov, Jill P.
- Nature Biotechnology, Vol. 27, Issue 2
Plasma proteome changes associated with refractory cytopenia with multilineage dysplasia
journal, January 2011
- Májek, Pavel; Reicheltová, Zuzana; Suttnar, Jiří
- Proteome Science, Vol. 9, Issue 1
Variation and quantification among a target set of phosphopeptides in human plasma by multiple reaction monitoring and SWATH-MS2 data-independent acquisition: Proteomics and 2DE
journal, July 2014
- Zawadzka, Anna M.; Schilling, Birgit; Held, Jason M.
- ELECTROPHORESIS, Vol. 35, Issue 24
High Abundance Proteins Depletion vs Low Abundance Proteins Enrichment: Comparison of Methods to Reduce the Plasma Proteome Complexity
journal, May 2011
- Millioni, Renato; Tolin, Serena; Puricelli, Lucia
- PLoS ONE, Vol. 6, Issue 5
Identification of potential bladder cancer markers in urine by abundant-protein depletion coupled with quantitative proteomics
journal, June 2013
- Chen, Chien-Lun; Lin, Tsung-Shih; Tsai, Cheng-Han
- Journal of Proteomics, Vol. 85
Proteomic Changes in Cerebrospinal Fluid of Presymptomatic and Affected Persons Carrying Familial Alzheimer Disease Mutations
journal, January 2012
- Ringman, John M.
- Archives of Neurology, Vol. 69, Issue 1
In-depth Characterization of the Cerebrospinal Fluid (CSF) Proteome Displayed Through the CSF Proteome Resource (CSF-PR)
journal, November 2014
- Guldbrandsen, Astrid; Vethe, Heidrun; Farag, Yehia
- Molecular & Cellular Proteomics, Vol. 13, Issue 11
Discovery and initial verification of differentially abundant proteins between multiple sclerosis patients and controls using iTRAQ and SID-SRM
journal, January 2013
- Kroksveen, Ann C.; Aasebø, Elise; Vethe, Heidrun
- Journal of Proteomics, Vol. 78
Proteomic Analysis of Ovarian Cancer Proximal Fluids: Validation of Elevated Peroxiredoxin 1 in Patient Peripheral Circulation
journal, September 2011
- Hoskins, Ebony R.; Hood, Brian L.; Sun, Mai
- PLoS ONE, Vol. 6, Issue 9
Quantitative, Multiplexed Assays for Low Abundance Proteins in Plasma by Targeted Mass Spectrometry and Stable Isotope Dilution
journal, October 2007
- Keshishian, Hasmik; Addona, Terri; Burgess, Michael
- Molecular & Cellular Proteomics, Vol. 6, Issue 12
Comparison of protein enrichment strategies for proteome analysis of plasma
journal, February 2010
- Bandow, Julia E.
- PROTEOMICS, Vol. 10, Issue 7
Spectral counting assessment of protein dynamic range in cerebrospinal fluid following depletion with plasma-designed immunoaffinity columns
journal, June 2011
- Borg, Jacques; Campos, Alex; Diema, Claudio
- Clinical Proteomics, Vol. 8, Issue 1
Assessment of Two Immunodepletion Methods: Off-Target Effects and Variations in Immunodepletion Efficiency May Confound Plasma Proteomics
journal, October 2012
- Patel, Bhavinkumar B.; Barrero, Carlos A.; Braverman, Alan
- Journal of Proteome Research, Vol. 11, Issue 12
Comparison of the performance of two affinity depletion spin filters for quantitative proteomics of CSF: Evaluation of sensitivity and reproducibility of CSF analysis using GeLC-MS/MS and spectral counting
journal, June 2010
- Fratantoni, Silvina A.; Piersma, Sander R.; Jimenez, Connie R.
- PROTEOMICS - Clinical Applications, Vol. 4, Issue 6-7
Quantitative assessment of human serum high-abundance protein depletion
journal, November 2008
- Stempfer, Rene; Kubicek, Markus; Lang, Irene M.
- ELECTROPHORESIS, Vol. 29, Issue 21
Identification of ovarian cancer-associated proteins in symptomatic women: A novel method for semi-quantitative plasma proteomics
journal, April 2012
- Shield-Artin, Kristy L.; Bailey, Mark J.; Oliva, Karen
- PROTEOMICS - Clinical Applications, Vol. 6, Issue 3-4
iTRAQ Identification of Candidate Serum Biomarkers Associated with Metastatic Progression of Human Prostate Cancer
journal, February 2012
- Rehman, Ishtiaq; Evans, Caroline A.; Glen, Adam
- PLoS ONE, Vol. 7, Issue 2
Antibody-free, targeted mass-spectrometric approach for quantification of proteins at low picogram per milliliter levels in human plasma/serum
journal, September 2012
- Shi, T.; Fillmore, T. L.; Sun, X.
- Proceedings of the National Academy of Sciences, Vol. 109, Issue 38
Glycoprotein Biomarker Panel for Pancreatic Cancer Discovered by Quantitative Proteomics Analysis
journal, March 2014
- Nie, Song; Lo, Andy; Wu, Jing
- Journal of Proteome Research, Vol. 13, Issue 4
Alterations in Protein Regulators of Neurodevelopment in the Cerebrospinal Fluid of Infants with Posthemorrhagic Hydrocephalus of Prematurity
journal, June 2012
- Morales, Diego M.; Townsend, R. Reid; Malone, James P.
- Molecular & Cellular Proteomics, Vol. 11, Issue 6
Proteome Profiling of Human Cerebrospinal Fluid: Exploring the Potential of Capillary Electrophoresis with Surface Modified Capillaries for Analysis of Complex Biological Samples
journal, April 2008
- Zuberovic, Aida; Hanrieder, Jörg; Hellman, Ulf
- European Journal of Mass Spectrometry, Vol. 14, Issue 4
Mouse-Specific Tandem IgY7-SuperMix Immunoaffinity Separations for Improved LC-MS/MS Coverage of the Plasma Proteome
journal, November 2009
- Zhou, Jian-Ying; Petritis, Brianne O.; Petritis, Konstantinos
- Journal of Proteome Research, Vol. 8, Issue 11
Microscale depletion of high abundance proteins in human biofluids using IgY14 immunoaffinity resin: analysis of human plasma and cerebrospinal fluid
journal, September 2014
- Hyung, Seok-Won; Piehowski, Paul D.; Moore, Ronald J.
- Analytical and Bioanalytical Chemistry, Vol. 406, Issue 28
Protein Equalizer™ Technology: The quest for a “democratic proteome”
journal, July 2006
- Righetti, Pier Giorgio; Boschetti, Egisto; Lomas, Lee
- PROTEOMICS, Vol. 6, Issue 14
Combinatorial Peptide Ligand Libraries as a “Trojan Horse” in Deep Discovery Proteomics
journal, August 2014
- Righetti, Pier Giorgio; Candiano, Giovanni; Citterio, Attilio
- Analytical Chemistry, Vol. 87, Issue 1
Inside human aortic stenosis: A proteomic analysis of plasma
journal, February 2012
- Gil-Dones, Félix; Darde, Verónica M.; Alonso-Orgaz, Sergio
- Journal of Proteomics, Vol. 75, Issue 5
Biomarker Discovery for Early Detection of Hepatocellular Carcinoma in Hepatitis C–infected Patients
journal, December 2013
- Mustafa, Mehnaz G.; Petersen, John R.; Ju, Hyunsu
- Molecular & Cellular Proteomics, Vol. 12, Issue 12
SAA1 is over-expressed in plasma of non small cell lung cancer patients with poor outcome after treatment with epidermal growth factor receptor tyrosine-kinase inhibitors
journal, December 2012
- Milan, Enrico; Lazzari, Chiara; Anand, Santosh
- Journal of Proteomics, Vol. 76
Enrichment strategies in glycomics-based lung cancer biomarker development
journal, August 2013
- Ruhaak, L. Renee; Nguyen, Uyen Thao; Stroble, Carol
- PROTEOMICS - Clinical Applications, Vol. 7, Issue 9-10
Improvements in Proteomic Metrics of Low Abundance Proteins through Proteome Equalization Using ProteoMiner Prior to MudPIT
journal, August 2011
- Fonslow, Bryan R.; Carvalho, Paulo C.; Academia, Katrina
- Journal of Proteome Research, Vol. 10, Issue 8
Rapid development of sensitive, high-throughput, quantitative and highly selective mass spectrometric targeted immunoassays for clinically important proteins in human plasma and serum
journal, April 2013
- Krastins, Bryan; Prakash, Amol; Sarracino, David A.
- Clinical Biochemistry, Vol. 46, Issue 6
Mass-Linked Immuno-Selective Assays in Targeted Proteomics
journal, November 2012
- Madian, Ashraf G.; Rochelle, Nishi S.; Regnier, Fred E.
- Analytical Chemistry, Vol. 85, Issue 2
Identification and quantification of N-linked glycoproteins using hydrazide chemistry, stable isotope labeling and mass spectrometry
journal, May 2003
- Zhang, Hui; Li, Xiao-jun; Martin, Daniel B.
- Nature Biotechnology, Vol. 21, Issue 6
Modification-specific proteomics: Strategies for characterization of post-translational modifications using enrichment techniques
journal, October 2009
- Zhao, Yingming; Jensen, Ole N.
- PROTEOMICS, Vol. 9, Issue 20
Resin-assisted enrichment of thiols as a general strategy for proteomic profiling of cysteine-based reversible modifications
journal, December 2013
- Guo, Jia; Gaffrey, Matthew J.; Su, Dian
- Nature Protocols, Vol. 9, Issue 1
High-Throughput Comparative Proteome Analysis Using a Quantitative Cysteinyl-peptide Enrichment Technology
journal, September 2004
- Liu, Tao; Qian, Wei-Jun; Strittmatter, Eric F.
- Analytical Chemistry, Vol. 76, Issue 18
Structure of the IgG-binding regions of streptococcal protein G.
journal, July 1986
- Guss, B.; Eliasson, M.; Olsson, A.
- The EMBO Journal, Vol. 5, Issue 7
Affibody-mediated transferrin depletion for proteomics applications
journal, November 2007
- Grönwall, Caroline; Sjöberg, Anna; Ramström, Margareta
- Biotechnology Journal, Vol. 2, Issue 11
Affibody molecules: Engineered proteins for therapeutic, diagnostic and biotechnological applications
journal, April 2010
- Löfblom, J.; Feldwisch, J.; Tolmachev, V.
- FEBS Letters, Vol. 584, Issue 12
Lectins: Proteins That Interpret the Sugar Code
journal, August 2003
- Nilsson, Carol L.
- Analytical Chemistry, Vol. 75, Issue 15
A Proteomics Platform Combining Depletion, Multi-lectin Affinity Chromatography (M-LAC), and Isoelectric Focusing to Study the Breast Cancer Proteome
journal, June 2011
- Zeng, Zhi; Hincapie, Marina; Pitteri, Sharon J.
- Analytical Chemistry, Vol. 83, Issue 12
Development of an improved fractionation of the human plasma proteome by a combination of abundant proteins depletion and multi-lectin affinity chromatography
journal, October 2014
- Gbormittah, Francisca O.; Hincapie, Marina; S. Hancock, William
- Bioanalysis, Vol. 6, Issue 19
Intracellular antibodies and challenges facing their use as therapeutic agents
journal, September 2003
- Lobato, M. Natividad; Rabbitts, Terence H.
- Trends in Molecular Medicine, Vol. 9, Issue 9
Intracellular antibodies and cancer: New technologies offer therapeutic opportunities
journal, June 2010
- Pérez-Martínez, David; Tanaka, Tomoyuki; Rabbitts, Terence H.
- BioEssays, Vol. 32, Issue 7
Single-chain antibodies as diagnostic tools and therapeutic agents
journal, January 2009
- Hagemeyer, Christoph; Muhlen, Constantin von zur; Elverfeldt, Dominik von
- Thrombosis and Haemostasis, Vol. 101, Issue 06
scFv Antibody: Principles and Clinical Application
journal, January 2012
- Ahmad, Zuhaida Asra; Yeap, Swee Keong; Ali, Abdul Manaf
- Clinical and Developmental Immunology, Vol. 2012
A human scFv antibody generation pipeline for proteome research
journal, April 2011
- Hust, Michael; Meyer, Torsten; Voedisch, Bernd
- Journal of Biotechnology, Vol. 152, Issue 4
Filamentous fusion phage: novel expression vectors that display cloned antigens on the virion surface
journal, June 1985
- Smith, G.
- Science, Vol. 228, Issue 4705
Selection of human antibody fragments by phage display
journal, November 2007
- Lee, Carol M. Y.; Iorno, Niccolo; Sierro, Frederic
- Nature Protocols, Vol. 2, Issue 11
Use of a Single-Chain Antibody Library for Ovarian Cancer Biomarker Discovery
journal, July 2010
- Ramirez, Arturo B.; Loch, Christian M.; Zhang, Yuzheng
- Molecular & Cellular Proteomics, Vol. 9, Issue 7
Dual-color Proteomic Profiling of Complex Samples with a Microarray of 810 Cancer-related Antibodies
journal, June 2010
- Schröder, Christoph; Jacob, Anette; Tonack, Sarah
- Molecular & Cellular Proteomics, Vol. 9, Issue 6
An Automated and Multiplexed Method for High Throughput Peptide Immunoaffinity Enrichment and Multiple Reaction Monitoring Mass Spectrometry-based Quantification of Protein Biomarkers
journal, October 2009
- Whiteaker, Jeffrey R.; Zhao, Lei; Anderson, Leigh
- Molecular & Cellular Proteomics, Vol. 9, Issue 1
Sequential Multiplexed Analyte Quantification Using Peptide Immunoaffinity Enrichment Coupled to Mass Spectrometry
journal, December 2011
- Whiteaker, Jeffrey R.; Zhao, Lei; Lin, Chenwei
- Molecular & Cellular Proteomics, Vol. 11, Issue 6
Global Proteomic Assessment of the Classical Protein-Tyrosine Phosphatome and “Redoxome”
journal, September 2011
- Karisch, Robert; Fernandez, Minerva; Taylor, Paul
- Cell, Vol. 146, Issue 5
Temporal Perturbation of Tyrosine Phosphoproteome Dynamics Reveals the System-wide Regulatory Networks
journal, February 2009
- Oyama, Masaaki; Kozuka-Hata, Hiroko; Tasaki, Shinya
- Molecular & Cellular Proteomics, Vol. 8, Issue 2
Global analysis of lysine ubiquitination by ubiquitin remnant immunoaffinity profiling
journal, July 2010
- Xu, Guoqiang; Paige, Jeremy S.; Jaffrey, Samie R.
- Nature Biotechnology, Vol. 28, Issue 8
Lysine Acetylation Targets Protein Complexes and Co-Regulates Major Cellular Functions
journal, July 2009
- Choudhary, C.; Kumar, C.; Gnad, F.
- Science, Vol. 325, Issue 5942
Generation of acetyllysine antibodies and affinity enrichment of acetylated peptides
journal, September 2010
- Guan, Kun-Liang; Yu, Wei; Lin, Yan
- Nature Protocols, Vol. 5, Issue 9
Different techniques for urinary protein analysis of normal and lung cancer patients
journal, March 2005
- Tantipaiboonwong, Payungsak; Sinchaikul, Supachok; Sriyam, Supawadee
- PROTEOMICS, Vol. 5, Issue 4
Different Immunoaffinity Fractionation Strategies to Characterize the Human Plasma Proteome
journal, June 2006
- Gong, Yan; Li, Xiaohai; Yang, Bing
- Journal of Proteome Research, Vol. 5, Issue 6
High-abundance protein depletion: Comparison of methods for human plasma biomarker discovery
journal, January 2010
- Polaskova, Veronika; Kapur, Amit; Khan, Alamgir
- ELECTROPHORESIS, Vol. 31, Issue 3
High Dynamic Range Characterization of the Trauma Patient Plasma Proteome
journal, October 2006
- Liu, Tao; Qian, Wei-Jun; Gritsenko, Marina A.
- Molecular & Cellular Proteomics, Vol. 5, Issue 10
Human Plasma N -Glycoproteome Analysis by Immunoaffinity Subtraction, Hydrazide Chemistry, and Mass Spectrometry
journal, December 2005
- Liu, Tao; Qian, Wei-Jun; Gritsenko, Marina A.
- Journal of Proteome Research, Vol. 4, Issue 6
Two-stage Off-Gel? isoelectric focusing: Protein followed by peptide fractionation and application to proteome analysis of human plasma
journal, March 2005
- Heller, Manfred; Michel, Philippe E.; Morier, Patrick
- ELECTROPHORESIS, Vol. 26, Issue 6
Analysis of serum total and free PSA using immunoaffinity depletion coupled to SRM: correlation with clinical immunoassay tests
journal, August 2012
- Liu, Tao; Hossain, Mahmud; Schepmoes, Athena A.
- Journal of Proteomics, Vol. 75, Issue 15
Quantification of Cardiovascular Biomarkers in Patient Plasma by Targeted Mass Spectrometry and Stable Isotope Dilution
journal, October 2009
- Keshishian, Hasmik; Addona, Terri; Burgess, Michael
- Molecular & Cellular Proteomics, Vol. 8, Issue 10
Reproducible Quantification of Cancer-Associated Proteins in Body Fluids Using Targeted Proteomics
journal, July 2012
- Huttenhain, R.; Soste, M.; Selevsek, N.
- Science Translational Medicine, Vol. 4, Issue 142
Quantitative Mass Spectrometric Multiple Reaction Monitoring Assays for Major Plasma Proteins
journal, December 2005
- Anderson, Leigh; Hunter, Christie L.
- Molecular & Cellular Proteomics, Vol. 5, Issue 4
Quantitative analysis of peptides and proteins in biomedicine by targeted mass spectrometry
journal, December 2012
- Gillette, Michael A.; Carr, Steven A.
- Nature Methods, Vol. 10, Issue 1
Protein Alterations Associated with Pancreatic Cancer and Chronic Pancreatitis Found in Human Plasma using Global Quantitative Proteomics Profiling
journal, May 2011
- Pan, Sheng; Chen, Ru; Crispin, David A.
- Journal of Proteome Research, Vol. 10, Issue 5
A Systematic Analysis of Eluted Fraction of Plasma Post Immunoaffinity Depletion: Implications in Biomarker Discovery
journal, September 2011
- Yadav, Amit Kumar; Bhardwaj, Gourav; Basak, Trayambak
- PLoS ONE, Vol. 6, Issue 9
Mass Spectrometric Immunoassay
journal, April 1995
- Nelson, Randall W.; Krone, Jennifer R.; Bieber, Allan L.
- Analytical Chemistry, Vol. 67, Issue 7
Developing Multiplexed Assays for Troponin I and Interleukin-33 in Plasma by Peptide Immunoaffinity Enrichment and Targeted Mass Spectrometry
journal, June 2009
- Kuhn, Eric; Addona, Terri; Keshishian, Hasmik
- Clinical Chemistry, Vol. 55, Issue 6
Proteomic technologies for the identification of disease biomarkers in serum: Advances and challenges ahead
journal, May 2011
- Ray, Sandipan; Reddy, Panga J.; Jain, Rekha
- PROTEOMICS, Vol. 11, Issue 11
Discovery of serum biomarkers of ovarian cancer using complementary proteomic profiling strategies
journal, November 2014
- Timms, John F.; Arslan-Low, Elif; Kabir, Musarat
- PROTEOMICS - Clinical Applications, Vol. 8, Issue 11-12
Deep depletion of abundant serum proteins reveals low-abundant proteins as potential biomarkers for human ovarian cancer
journal, July 2009
- Lin, Biaoyang; White, James T.; Wu, Jian
- PROTEOMICS - Clinical Applications, Vol. 3, Issue 7
A mass spectrometry-based plasma protein panel targeting the tumor microenvironment in patients with breast cancer
journal, April 2013
- Cohen, Alejandro; Wang, Edwin; Chisholm, Kenneth A.
- Journal of Proteomics, Vol. 81
Serum Soluble CD14 Is a Potential Prognostic Indicator of Recurrence of Human Breast Invasive Ductal Carcinoma with Her2-Enriched Subtype
journal, September 2013
- He, Weifeng; Tong, Yifan; Wang, Ying
- PLoS ONE, Vol. 8, Issue 9
Mass spectrometry in cancer biomarker research: a case for immunodepletion of abundant blood-derived proteins from clinical tissue specimens
journal, February 2014
- Prieto, DaRue A.; Johann, Donald J.; Wei, Bih-Rong
- Biomarkers in Medicine, Vol. 8, Issue 2
Identification and validation of novel candidate protein biomarkers for the detection of human gastric cancer
journal, May 2014
- Humphries, Julia M.; Penno, Megan A. S.; Weiland, Florian
- Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, Vol. 1844, Issue 5
2D-DIGE as a Strategy To Identify Serum Markers for the Progression of Prostate Cancer
journal, December 2008
- Byrne, Jennifer C.; Downes, Michelle R.; O’Donoghue, Niaobh
- Journal of Proteome Research, Vol. 8, Issue 2
A Highly Sensitive Targeted Mass Spectrometric Assay for Quantification of AGR2 Protein in Human Urine and Serum
journal, December 2013
- Shi, Tujin; Gao, Yuqian; Quek, Sue Ing
- Journal of Proteome Research, Vol. 13, Issue 2
Sequential depletion of human serum for the search of osteoarthritis biomarkers
journal, January 2012
- Fernández-Costa, Carolina; Calamia, Valentina; Fernández-Puente, Patricia
- Proteome Science, Vol. 10, Issue 1
Identification of a Panel of Novel Serum Osteoarthritis Biomarkers
journal, November 2011
- Fernández-Puente, Patricia; Mateos, Jesús; Fernández-Costa, Carolina
- Journal of Proteome Research, Vol. 10, Issue 11
Identification of Potential Prognostic Markers for Knee Osteoarthritis by Serum Proteomic Analysis
journal, January 2013
- Takinami, Yoshihiko; Yoshimatsu, Shinya; Uchiumi, Takaoki
- Biomarker Insights, Vol. 8
A pipeline that integrates the discovery and verification of plasma protein biomarkers reveals candidate markers for cardiovascular disease
journal, June 2011
- Addona, Terri A.; Shi, Xu; Keshishian, Hasmik
- Nature Biotechnology, Vol. 29, Issue 7
Advances in urinary protein biomarkers for urogenital and non-urogenital pathologies
journal, January 2015
- Pedroza-Diaz, Johanna; Röthlisberger, Sarah
- Biochemia Medica
Identification of a urine metabolomic signature in patients with advanced-stage chronic kidney disease
journal, January 2014
- Posada-Ayala, Maria; Zubiri, Irene; Martin-Lorenzo, Marta
- Kidney International, Vol. 85, Issue 1
A stable panel comprising 18 urinary proteins in the human healthy population
journal, April 2012
- He, Weifeng; Huang, Chibing; Luo, Gaoxing
- PROTEOMICS, Vol. 12, Issue 7
Urine 2DE proteome analysis in healthy condition and kidney disease: Proteomics and 2DE
journal, August 2014
- Martin-Lorenzo, Marta; Gonzalez-Calero, Laura; Zubiri, Irene
- ELECTROPHORESIS, Vol. 35, Issue 18
Comparison of different depletion strategies for improving resolution of the human urine proteome
journal, January 2010
- Magagnotti, Cinzia; Fermo, Isabella; Carletti, Rose Mary
- Clinical Chemistry and Laboratory Medicine, Vol. 48, Issue 4
Clinical validation of an immunoaffinity LC–MS/MS assay for the quantification of a collagen type II neoepitope peptide: A biomarker of matrix metalloproteinase activity and osteoarthritis in human urine
journal, October 2007
- Li, Wenlin (Wendy); Nemirovskiy, Olga; Fountain, Scott
- Analytical Biochemistry, Vol. 369, Issue 1
A method for isolation and identification of urinary biomarkers in patients with diabetic nephropathy
journal, December 2011
- Fisher, Wayne G.; Lucas, Jessica E.; Mehdi, Uzma F.
- PROTEOMICS - Clinical Applications, Vol. 5, Issue 11-12
Proteomic Identification of Urinary Biomarkers of Diabetic Nephropathy
journal, February 2007
- Rao, P. V.; Lu, X.; Standley, M.
- Diabetes Care, Vol. 30, Issue 3
Urinary proteomic shotgun approach for identification of potential acute rejection biomarkers in renal transplant recipients
journal, January 2012
- Loftheim, Håvard; Midtvedt, Karsten; Hartmann, Anders
- Transplantation Research, Vol. 1, Issue 1
Recent cerebrospinal fluid biomarker studies of Alzheimer’s disease
journal, December 2010
- Choi, Yong Seok; Choe, Leila H.; Lee, Kelvin H.
- Expert Review of Proteomics, Vol. 7, Issue 6
Proteomics of human cerebrospinal fluid: Discovery and verification of biomarker candidates in neurodegenerative diseases using quantitative proteomics
journal, April 2011
- Kroksveen, A. C.; Opsahl, J. A.; Aye, T. T.
- Journal of Proteomics, Vol. 74, Issue 4
Protein Changes in Immunodepleted Cerebrospinal Fluid from a Transgenic Mouse Model of Alexander Disease Detected Using Mass Spectrometry
journal, January 2013
- Cunningham, Robert; Jany, Paige; Messing, Albee
- Journal of Proteome Research, Vol. 12, Issue 2
Establishing the Proteome of Normal Human Cerebrospinal Fluid
journal, June 2010
- Schutzer, Steven E.; Liu, Tao; Natelson, Benjamin H.
- PLoS ONE, Vol. 5, Issue 6
Distinct Cerebrospinal Fluid Proteomes Differentiate Post-Treatment Lyme Disease from Chronic Fatigue Syndrome
journal, February 2011
- Schutzer, Steven E.; Angel, Thomas E.; Liu, Tao
- PLoS ONE, Vol. 6, Issue 2
A comprehensive map and functional annotation of the normal human cerebrospinal fluid proteome
journal, April 2015
- Zhang, Yang; Guo, Zhengguang; Zou, Lili
- Journal of Proteomics, Vol. 119
iTRAQ and multiple reaction monitoring as proteomic tools for biomarker search in cerebrospinal fluid of patients with Parkinson's disease dementia
journal, April 2012
- Lehnert, Stefan; Jesse, Sarah; Rist, Wolfgang
- Experimental Neurology, Vol. 234, Issue 2
Brain-specific Proteins Decline in the Cerebrospinal Fluid of Humans with Huntington Disease
journal, March 2009
- Fang, Qiaojun; Strand, Andrew; Law, Wendy
- Molecular & Cellular Proteomics, Vol. 8, Issue 3
Differential protein profiling of synovial fluid from rheumatoid arthritis and osteoarthritis patients using LC–MALDI TOF/TOF
journal, June 2012
- Mateos, Jesús; Lourido, Lucía; Fernández-Puente, Patricia
- Journal of Proteomics, Vol. 75, Issue 10
Proteomic analysis of human osteoarthritis synovial fluid
journal, January 2014
- Balakrishnan, Lavanya; Nirujogi, Raja; Ahmad, Sartaj
- Clinical Proteomics, Vol. 11, Issue 1
Microfluidic integration for automated targeted proteomic assays
journal, April 2012
- Hughes, A. J.; Lin, R. K. C.; Peehl, D. M.
- Proceedings of the National Academy of Sciences, Vol. 109, Issue 16
A comprehensive and non-prefractionation on the protein level approach for the human urinary proteome: touching phosphorylation in urine: Human urinary proteome: touching phosphorylation in urine
journal, February 2010
- Li, Qing-Run; Fan, Ke-Xin; Li, Rong-Xia
- Rapid Communications in Mass Spectrometry, Vol. 24, Issue 6
Works referencing / citing this record:
Affinity depletion versus relative protein enrichment: a side-by-side comparison of two major strategies for increasing human cerebrospinal fluid proteome coverage
journal, February 2019
- Jankovska, Eliska; Svitek, Marek; Holada, Karel
- Clinical Proteomics, Vol. 16, Issue 1
Needle lost in the haystack: multiple reaction monitoring fails to detect Treponema pallidum candidate protein biomarkers in plasma and urine samples from individuals with syphilis
journal, January 2018
- Van Raemdonck, Geert A.; Osbak, Kara K.; Van Ostade, Xaveer
- F1000Research, Vol. 7
Plasma/serum proteomics: depletion strategies for reducing high-abundance proteins for biomarker discovery
journal, October 2019
- Lee, Pey Yee; Osman, Junaida; Low, Teck Yew
- Bioanalysis, Vol. 11, Issue 19
The role of proteomics in assessing beta-cell dysfunction and death in type 1 diabetes
journal, June 2019
- Nakayasu, Ernesto S.; Qian, Wei-Jun; Evans-Molina, Carmella
- Expert Review of Proteomics, Vol. 16, Issue 7
Sample preparation in foodomic analyses
journal, May 2018
- Martinović, Tamara; Šrajer Gajdošik, Martina; Josić, Djuro
- ELECTROPHORESIS, Vol. 39, Issue 13
Two-Dimensional Gel Electrophoresis and 2D-DIGE
book, October 2017
- Meleady, Paula
- Methods in Molecular Biology
Assessment of the Utility of the Oral Fluid and Plasma Proteomes for Hydrocodone Exposure
journal, November 2019
- Deatherage Kaiser, Brooke L.; Jacobs, Jon M.; Schepmoes, Athena A.
- Journal of Medical Toxicology, Vol. 16, Issue 1
Needle lost in the haystack: multiple reaction monitoring fails to detect Treponema pallidum candidate protein biomarkers in plasma and urine samples from individuals with syphilis
journal, January 2018
- Van Raemdonck, Geert A.; Osbak, Kara K.; Van Ostade, Xaveer
- F1000Research, Vol. 7
Needle lost in the haystack: multiple reaction monitoring fails to detect Treponema pallidum candidate protein biomarkers in plasma and urine samples from individuals with syphilis
journal, January 2018
- Van Raemdonck, Geert A.; Osbak, Kara K.; Van Ostade, Xaveer
- F1000Research, Vol. 7