Structure of the human factor VIII C2 domain in complex with the 3E6 inhibitory antibody
Abstract
Blood coagulation factor VIII is a glycoprotein cofactor that is essential for the intrinsic pathway of the blood coagulation cascade. Inhibitory antibodies arise either spontaneously or in response to therapeutic infusion of functional factor VIII into hemophilia A patients, many of which are specific to the factor VIII C2 domain. The immune response is largely parsed into “classical” and “non-classical” inhibitory antibodies, which bind to opposing faces cooperatively. In this study, the 2.61 Å resolution structure of the C2 domain in complex with the antigen-binding fragment of the 3E6 classical inhibitory antibody is reported. The binding interface is largely conserved when aligned with the previously determined structure of the C2 domain in complex with two antibodies simultaneously. Further inspection of the B factors for the C2 domain in various X-ray crystal structures indicates that 3E6 antibody binding decreases the thermal motion behavior of surface loops in the C2 domain on the opposing face, thereby suggesting that cooperative antibody binding is a dynamic effect. Furthermore, understanding the structural nature of the immune response to factor VIII following hemophilia A treatment will help lead to the development of better therapeutic reagents.
- Authors:
-
- Western Washington Univ., Bellingham, WA (United States)
- Publication Date:
- Research Org.:
- Univ. of California (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC)
- OSTI Identifier:
- 1241019
- Grant/Contract Number:
- AC02-05CH11231
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Scientific Reports
- Additional Journal Information:
- Journal Volume: 5; Journal ID: ISSN 2045-2322
- Publisher:
- Nature Publishing Group
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 60 APPLIED LIFE SCIENCES; coagulation system; X-ray crystallography
Citation Formats
Wuerth, Michelle E., Cragerud, Rebecca K., and Spiegel, P. Clint. Structure of the human factor VIII C2 domain in complex with the 3E6 inhibitory antibody. United States: N. p., 2015.
Web. doi:10.1038/srep17216.
Wuerth, Michelle E., Cragerud, Rebecca K., & Spiegel, P. Clint. Structure of the human factor VIII C2 domain in complex with the 3E6 inhibitory antibody. United States. https://doi.org/10.1038/srep17216
Wuerth, Michelle E., Cragerud, Rebecca K., and Spiegel, P. Clint. Tue .
"Structure of the human factor VIII C2 domain in complex with the 3E6 inhibitory antibody". United States. https://doi.org/10.1038/srep17216. https://www.osti.gov/servlets/purl/1241019.
@article{osti_1241019,
title = {Structure of the human factor VIII C2 domain in complex with the 3E6 inhibitory antibody},
author = {Wuerth, Michelle E. and Cragerud, Rebecca K. and Spiegel, P. Clint},
abstractNote = {Blood coagulation factor VIII is a glycoprotein cofactor that is essential for the intrinsic pathway of the blood coagulation cascade. Inhibitory antibodies arise either spontaneously or in response to therapeutic infusion of functional factor VIII into hemophilia A patients, many of which are specific to the factor VIII C2 domain. The immune response is largely parsed into “classical” and “non-classical” inhibitory antibodies, which bind to opposing faces cooperatively. In this study, the 2.61 Å resolution structure of the C2 domain in complex with the antigen-binding fragment of the 3E6 classical inhibitory antibody is reported. The binding interface is largely conserved when aligned with the previously determined structure of the C2 domain in complex with two antibodies simultaneously. Further inspection of the B factors for the C2 domain in various X-ray crystal structures indicates that 3E6 antibody binding decreases the thermal motion behavior of surface loops in the C2 domain on the opposing face, thereby suggesting that cooperative antibody binding is a dynamic effect. Furthermore, understanding the structural nature of the immune response to factor VIII following hemophilia A treatment will help lead to the development of better therapeutic reagents.},
doi = {10.1038/srep17216},
journal = {Scientific Reports},
number = ,
volume = 5,
place = {United States},
year = {Tue Nov 24 00:00:00 EST 2015},
month = {Tue Nov 24 00:00:00 EST 2015}
}
Web of Science
Works referenced in this record:
Characterization of the human factor VIII gene
journal, November 1984
- Gitschier, Jane; Wood, William I.; Goralka, Therese M.
- Nature, Vol. 312, Issue 5992
Glutathione Reductase of the Malarial Parasite Plasmodium falciparum: Crystal Structure and Inhibitor Development
journal, May 2003
- Sarma, G. N.; Savvides, S. N.; Becker, K.
- Journal of Molecular Biology, Vol. 328, Issue 4
Characterization of the human factor VIII gene
journal, November 1984
- Gitschier, Jane; Wood, William I.; Goralka, Therese M.
- Nature, Vol. 312, Issue 5992
A Factor VIII Neutralizing Monoclonal Antibody and a Human Inhibitor Alloantibody Recognizing Epitopes in the C2 Domain Inhibit Factor VIII Binding to von Willebrand Factor and to Phosphatidylserine
journal, March 1993
- Shima, Midori; Scandella, Dorothea; Yoshioka, Akira
- Thrombosis and Haemostasis, Vol. 69, Issue 03
Antibody Multispecificity Mediated by Conformational Diversity
journal, February 2003
- James, L. C.
- Science, Vol. 299, Issue 5611
A Factor VIII Neutralizing Monoclonal Antibody and a Human Inhibitor Alloantibody Recognizing Epitopes in the C2 Domain Inhibit Factor VIII Binding to von Willebrand Factor and to Phosphatidylserine
journal, March 1993
- Shima, Midori; Scandella, Dorothea; Yoshioka, Akira
- Thrombosis and Haemostasis, Vol. 69, Issue 03
Structure of a factor VIII C2 domain–immunoglobulin G4κ Fab complex: identification of an inhibitory antibody epitope on the surface of factor VIII
journal, July 2001
- Spiegel, Paul Clint; Jacquemin, Marc; Saint-Remy, Jean-Marie R.
- Blood, Vol. 98, Issue 1
Occurrence of hemophilia in the United States
journal, December 1998
- Soucie, J. Michael; Evatt, Bruce; Jackson, Debra
- American Journal of Hematology, Vol. 59, Issue 4
A human FVIII inhibitor modulates FVIII surface electrostatics at a VWF-binding site distant from its epitope: Electrostatic perturbations on FVIII induced by a FVIII inhibitor
journal, March 2010
- Dimitrov, J. D.; Roumenina, L. T.; Plantier, J. -L.
- Journal of Thrombosis and Haemostasis, Vol. 8, Issue 7
Antihuman factor VIII C2 domain antibodies in hemophilia A mice recognize a functionally complex continuous spectrum of epitopes dominated by inhibitors of factor VIII activation
journal, December 2007
- Meeks, Shannon L.; Healey, John F.; Parker, Ernest T.
- Blood, Vol. 110, Issue 13
Subunit structure of thrombin-activated porcine factor VIII
journal, January 1989
- Lollar, Pete; Parker, Carlo G.
- Biochemistry, Vol. 28, Issue 2
PHENIX: a comprehensive Python-based system for macromolecular structure solution.
text, January 2010
- Adams, Paul D.; Afonine, Pavel V.; Bunkóczi, Gábor
- Apollo - University of Cambridge Repository
Some factor VIII inhibitor antibodies recognize a common epitope corresponding to C2 domain amino acids 2248 through 2312, which overlap a phospholipid-binding site
journal, September 1995
- Scandella, D.; Gilbert, Ge; Shima, M.
- Blood, Vol. 86, Issue 5
Antihuman factor VIII C2 domain antibodies in hemophilia A mice recognize a functionally complex continuous spectrum of epitopes dominated by inhibitors of factor VIII activation
journal, December 2007
- Meeks, Shannon L.; Healey, John F.; Parker, Ernest T.
- Blood, Vol. 110, Issue 13
Nonclassical anti-C2 domain antibodies are present in patients with factor VIII inhibitors
journal, August 2008
- Meeks, Shannon L.; Healey, John F.; Parker, Ernest T.
- Blood, Vol. 112, Issue 4
Nonclassical anti-C2 domain antibodies are present in patients with factor VIII inhibitors
journal, August 2008
- Meeks, Shannon L.; Healey, John F.; Parker, Ernest T.
- Blood, Vol. 112, Issue 4
MolProbity : all-atom structure validation for macromolecular crystallography
journal, December 2009
- Chen, Vincent B.; Arendall, W. Bryan; Headd, Jeffrey J.
- Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 1
Epitope mapping of inhibitory antibodies targeting the C2 domain of coagulation factor VIII by hydrogen-deuterium exchange mass spectrometry
journal, December 2013
- Sevy, A. M.; Healey, J. F.; Deng, W.
- Journal of Thrombosis and Haemostasis, Vol. 11, Issue 12
The safety and efficacy of B-domain deleted recombinant factor VIII concentrate in patients with severe haemophilia A
journal, January 2003
- Lusher, J. M.; Lee, C. A.; Kessler, C. M.
- Haemophilia, Vol. 9, Issue 1
Rate of inhibitor development in previously untreated hemophilia A patients treated with plasma-derived or recombinant factor VIII concentrates: a systematic review
journal, March 2010
- Iorio, A.; Halimeh, S.; Holzhauer, S.
- Journal of Thrombosis and Haemostasis, Vol. 8, Issue 6
Characterization and Solution Structure of the Factor VIII C2 Domain in a Ternary Complex with Classical and Non-classical Inhibitor Antibodies
journal, February 2013
- Walter, Justin D.; Werther, Rachel A.; Polozova, Maria S.
- Journal of Biological Chemistry, Vol. 288, Issue 14
Robust, high-throughput solution structural analyses by small angle X-ray scattering (SAXS)
journal, July 2009
- Hura, Greg L.; Menon, Angeli L.; Hammel, Michal
- Nature Methods, Vol. 6, Issue 8
Structure of human factor VIII
journal, November 1984
- Vehar, Gordon A.; Keyt, Bruce; Eaton, Dan
- Nature, Vol. 312, Issue 5992
The Factor VIIIa C2 Domain (Residues 2228–2240) Interacts with the Factor IXa Gla Domain in the Factor Xase Complex
journal, December 2008
- Soeda, Tetsuhiro; Nogami, Keiji; Nishiya, Katsumi
- Journal of Biological Chemistry, Vol. 284, Issue 6
The tertiary structure and domain organization of coagulation factor VIII
journal, February 2008
- Shen, Betty W.; Spiegel, Paul Clint; Chang, Chong-Hwan
- Blood, Vol. 111, Issue 3
PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations
journal, July 2004
- Dolinsky, T. J.; Nielsen, J. E.; McCammon, J. A.
- Nucleic Acids Research, Vol. 32, Issue Web Server, p. W665-W667
Crystallographic structure of an intact IgG1 monoclonal antibody 1 1Edited by I. A. Wilson
journal, February 1998
- Harris, Lisa J.; Skaletsky, Eileen; McPherson, Alexander
- Journal of Molecular Biology, Vol. 275, Issue 5
The future of plasma-derived clotting factor concentrates
journal, January 2001
- Hoots, W. K.
- Haemophilia, Vol. 7, Issue s1
Reduced surface: An efficient way to compute molecular surfaces
journal, March 1996
- Sanner, Michel F.; Olson, Arthur J.; Spehner, Jean-Claude
- Biopolymers, Vol. 38, Issue 3
Factor VIII inhibitors in haemophiliacs
journal, July 1992
- Ehrenforth, S.; Kreuz, W.; Scharrer, I.
- The Lancet, Vol. 340, Issue 8813
Structure of the C2 domain of human factor VIII at 1.5 Å resolution
journal, November 1999
- Pratt, Kathleen P.; Shen, Betty W.; Takeshima, Kazuya
- Nature, Vol. 402, Issue 6760
The diversity of the immune response to the A2 domain of human factor VIII
journal, April 2013
- Markovitz, Rebecca C.; Healey, John F.; Parker, Ernest T.
- Blood, Vol. 121, Issue 14
The safety and efficacy of B-domain deleted recombinant factor VIII concentrates in patients with severe haemophilia A: an update
journal, May 2005
- Lusher, J. M.; Roth, D. A.
- Haemophilia, Vol. 11, Issue 3
Role of Factor VIII C2 Domain in Factor VIII Binding to Factor Xa
journal, October 1999
- Nogami, Keiji; Shima, Midori; Hosokawa, Kazuya
- Journal of Biological Chemistry, Vol. 274, Issue 43
Robust, high-throughput solution structural analyses by small angle X-ray scattering (SAXS)
journal, July 2009
- Hura, Greg L.; Menon, Angeli L.; Hammel, Michal
- Nature Methods, Vol. 6, Issue 8
Molecular cloning of a cDNA encoding human antihaemophilic factor
journal, November 1984
- Toole, John J.; Knopf, John L.; Wozney, John M.
- Nature, Vol. 312, Issue 5992
Non-Classical Anti-Factor VIII C2 Domain Antibodies Are Pathogenic in a Murine in Vivo Bleeding Model.
journal, November 2008
- Meeks, Shannon; Healey, John F.; Parker, Ernest T.
- Blood, Vol. 112, Issue 11
Non-classical anti-factor VIII C2 domain antibodies are pathogenic in a murine in vivo bleeding model
journal, April 2009
- Meeks, S. L.; Healey, J. F.; Parker, E. T.
- Journal of Thrombosis and Haemostasis, Vol. 7, Issue 4
The 1.7 Å X-Ray Crystal Structure of the Porcine Factor VIII C2 Domain and Binding Analysis to Anti-Human C2 Domain Antibodies and Phospholipid Surfaces
journal, March 2015
- Brison, Caileen M.; Mullen, Steven M.; Wuerth, Michelle E.
- PLOS ONE, Vol. 10, Issue 3
The 1.7 Å X-Ray Crystal Structure of the Porcine Factor VIII C2 Domain and Binding Analysis to Anti-Human C2 Domain Antibodies and Phospholipid Surfaces
journal, March 2015
- Brison, Caileen M.; Mullen, Steven M.; Wuerth, Michelle E.
- PLOS ONE, Vol. 10, Issue 3
Using Situs for Flexible and Rigid-Body Fitting of Multiresolution Single-Molecule Data
journal, February 2001
- Wriggers, Willy; Birmanns, Stefan
- Journal of Structural Biology, Vol. 133, Issue 2-3
Purity of factor VIII product and incidence of inhibitors in previously untreated patients with haemophilia A
journal, July 2001
- Mauser-Bunschoten, E. P.; Van Der Bom, J. G.; Bongers, M.
- Haemophilia, Vol. 7, Issue 4
Role of Factor VIII C2 Domain in Factor VIII Binding to Factor Xa
journal, October 1999
- Nogami, Keiji; Shima, Midori; Hosokawa, Kazuya
- Journal of Biological Chemistry, Vol. 274, Issue 43
Incidence of development of factor VIII and factor IX inhibitors in haemophiliacs
journal, March 1992
- Ehrenforth, S.; Kreuz, W.; Linde, R.
- The Lancet, Vol. 339, Issue 8793
Features and development of Coot
journal, March 2010
- Emsley, P.; Lohkamp, B.; Scott, W. G.
- Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 4
Structure of the factor VIII C2 domain in a ternary complex with 2 inhibitor antibodies reveals classical and nonclassical epitopes
journal, December 2013
- Walter, Justin D.; Werther, Rachel A.; Brison, Caileen M.
- Blood, Vol. 122, Issue 26
Interactions between residues 2228–2240 within factor VIIIa C2 domain and factor IXa Gla domain contribute to propagation of clot formation
journal, January 2011
- Soeda, Tetsuhiro; Nogami, Keiji; Ogiwara, Kenichi
- Thrombosis and Haemostasis, Vol. 106, Issue 11
New developments in the ATSAS program package for small-angle scattering data analysis
journal, March 2012
- Petoukhov, Maxim V.; Franke, Daniel; Shkumatov, Alexander V.
- Journal of Applied Crystallography, Vol. 45, Issue 2
Molecular cloning of a cDNA encoding human antihaemophilic factor
journal, November 1984
- Toole, John J.; Knopf, John L.; Wozney, John M.
- Nature, Vol. 312, Issue 5992
PHENIX: a comprehensive Python-based system for macromolecular structure solution
journal, January 2010
- Adams, Paul D.; Afonine, Pavel V.; Bunkóczi, Gábor
- Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 2, p. 213-221
Molecular basis of factor VIII inhibition by human antibodies. Antibodies that bind to the factor VIII light chain prevent the interaction of factor VIII with phospholipid.
journal, June 1989
- Arai, M.; Scandella, D.; Hoyer, L. W.
- Journal of Clinical Investigation, Vol. 83, Issue 6
Differential proteolytic activation of factor VIII-von Willebrand factor complex by thrombin
journal, September 1989
- Hill-Eubanks, D. C.; Parker, C. G.; Lollar, P.
- Proceedings of the National Academy of Sciences, Vol. 86, Issue 17
Four Hydrophobic Amino Acids of the Factor VIII C2 Domain Are Constituents of Both the Membrane-binding and von Willebrand Factor-binding Motifs
journal, November 2001
- Gilbert, Gary E.; Kaufman, Randal J.; Arena, Andrew A.
- Journal of Biological Chemistry, Vol. 277, Issue 8
The Acidic Region of the Factor VIII Light Chain and the C2 Domain Together Form the High Affinity Binding Site for von Willebrand Factor
journal, July 1997
- Saenko, Evgueni L.; Scandella, Dorothea
- Journal of Biological Chemistry, Vol. 272, Issue 29
PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations
journal, July 2004
- Dolinsky, T. J.; Nielsen, J. E.; McCammon, J. A.
- Nucleic Acids Research, Vol. 32, Issue Web Server, p. W665-W667
Rate of inhibitor development in previously untreated hemophilia A patients treated with plasma-derived or recombinant factor VIII concentrates: a systematic review
journal, March 2010
- Iorio, A.; Halimeh, S.; Holzhauer, S.
- Journal of Thrombosis and Haemostasis, Vol. 8, Issue 6
Differential proteolytic activation of factor VIII-von Willebrand factor complex by thrombin
journal, September 1989
- Hill-Eubanks, D. C.; Parker, C. G.; Lollar, P.
- Proceedings of the National Academy of Sciences, Vol. 86, Issue 17
The Acidic Region of the Factor VIII Light Chain and the C2 Domain Together Form the High Affinity Binding Site for von Willebrand Factor
journal, July 1997
- Saenko, Evgueni L.; Scandella, Dorothea
- Journal of Biological Chemistry, Vol. 272, Issue 29
Structure of the C2 domain of human factor VIII at 1.5 Å resolution
journal, November 1999
- Pratt, Kathleen P.; Shen, Betty W.; Takeshima, Kazuya
- Nature, Vol. 402, Issue 6760
Purity of factor VIII product and incidence of inhibitors in previously untreated patients with haemophilia A
journal, July 2001
- Mauser-Bunschoten, E. P.; Van Der Bom, J. G.; Bongers, M.
- Haemophilia, Vol. 7, Issue 4
Factor VIII inhibitor epitopes and an enigma
journal, December 2013
- Gilbert, Gary E.
- Blood, Vol. 122, Issue 26
The future of plasma-derived clotting factor concentrates
journal, January 2001
- Hoots, W. K.
- Haemophilia, Vol. 7, Issue s1
[20] Processing of X-ray diffraction data collected in oscillation mode
book, January 1997
- Otwinowski, Zbyszek; Minor, Wladek
- Macromolecular Crystallography Part A, 307-326
Epitope mapping of inhibitory antibodies targeting the C2 domain of coagulation factor VIII by hydrogen-deuterium exchange mass spectrometry
journal, December 2013
- Sevy, A. M.; Healey, J. F.; Deng, W.
- Journal of Thrombosis and Haemostasis, Vol. 11, Issue 12
Luxury accommodations: the expanding role of structural plasticity in protein–protein interactions
journal, July 2000
- Sundberg, Eric J.; Mariuzza, Roy A.
- Structure, Vol. 8, Issue 7
The Life Cycle of Coagulation Factor VIII in View of Its Structure and Function
journal, December 1998
- Lenting, Peter J.; van Mourik, Jan A.; Mertens, Koen
- Blood, Vol. 92, Issue 11
A major factor VIII binding domain resides within the amino-terminal 272 amino acid residues of von Willebrand factor.
journal, June 1987
- Foster, P. A.; Fulcher, C. A.; Marti, T.
- Journal of Biological Chemistry, Vol. 262, Issue 18
The role of phospholipid and factor VIIIa in the activation of bovine factor X.
journal, April 1981
- van Dieijen, G.; Tans, G.; Rosing, J.
- Journal of Biological Chemistry, Vol. 256, Issue 7
Biochemical and Molecular Aspects of the Coagulation Cascade
journal, January 1995
- Davie, Earl W.
- Thrombosis and Haemostasis, Vol. 74, Issue 01
The Inhibitor Antibody Response Is More Complex in Hemophilia A Patients Than in Most Nonhemophiliacs With Factor VIII Autoantibodies
journal, May 1997
- Prescott, Richard; Nakai, Hiroaki; Saenko, Evgueni L.
- Blood, Vol. 89, Issue 10
Mechanism and Kinetics of Factor VIII Inactivation: Study With an IgG4 Monoclonal Antibody Derived From a Hemophilia A Patient With Inhibitor
journal, July 1998
- Jacquemin, Marc G.; Desqueper, Benoı̂t G.; Benhida, Abdellah
- Blood, Vol. 92, Issue 2
Cooperative Binding Of Anti-Factor VIII Inhibitors and Induced Conformational Change Detected By Hydrogen-Deuterium Exchange Mass Spectrometry
journal, November 2013
- Meeks, Shannon L.; Sevy, Alexander M.; Healey, John F.
- Blood, Vol. 122, Issue 21