Burkholderia phytofirmans inoculation-induced changes on the shoot cell anatomy and iron accumulation reveal novel components of Arabidopsis-endophyte interaction that can benefit downstream biomass deconstruction
Abstract
In this study, it is known that plant growth promoting bacteria (PGPB) elicit positive effects on plant growth and biomass yield. However, the actual mechanism behind the plant-PGPB interaction is poorly understood, and the literature is scarce regarding the thermochemical pretreatability and enzymatic degradability of biomass derived from PGPB-inoculated plants. Most recent transcriptional analyses of PGPB strain Burkholderia phytofirmans PsJN inoculating potato in literature and Arabidopsis in our present study have revealed the expression of genes for ferritin and the biosynthesis and transport of siderophores (i.e., the molecules with high affinity for iron), respectively. The expression of such genes in the shoots of PsJN-inoculated plants prompted us to propose that PsJN-inoculation can improve the host plant's iron uptake and accumulation, which facilitates the downstream plant biomass pretreatment and conversion to simple sugars. In this study, we employed B. phytofirmans PsJN to inoculate the Arabidopsis thaliana plants, and conducted the first investigation for its effects on the biomass yield, the anatomical organization of stems, the iron accumulation, and the pretreatment and enzymatic hydrolysis of harvested biomass. The results showed that the strain PsJN stimulated plant growth in the earlier period of plant development and enlarged the cell size of stem piths,more »
- Authors:
-
- National Renewable Energy Lab. (NREL), Golden, CO (United States)
- Publication Date:
- Research Org.:
- National Renewable Energy Laboratory (NREL), Golden, CO (United States); Energy Frontier Research Centers (EFRC) (United States). Center for Direct Catalytic Conversion of Biomass to Biofuels (C3Bio)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER); USDOE Office of Science (SC), Basic Energy Sciences (BES)
- OSTI Identifier:
- 1240076
- Report Number(s):
- NREL/JA-2700-64341
Journal ID: ISSN 1664-462X
- Grant/Contract Number:
- AC36-08GO28308; SC000997
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Frontiers in Plant Science
- Additional Journal Information:
- Journal Volume: 7; Journal Issue: 3; Related Information: Frontiers in Plant Science; Journal ID: ISSN 1664-462X
- Publisher:
- Frontiers Research Foundation
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 09 BIOMASS FUELS; 59 BASIC BIOLOGICAL SCIENCES; plant growth promoting rhizobacteria (PGPR); plant growth; biomass deconstruction; essential mineral nutrients; Burkholderia phytofirmans; PsJN; iron accumulation; biomass conversion
Citation Formats
Zhao, Shuai, Wei, Hui, Lin, Chien -Yuan, Zeng, Yining, Tucker, Melvin P., Himmel, Michael E., and Ding, Shi -You. Burkholderia phytofirmans inoculation-induced changes on the shoot cell anatomy and iron accumulation reveal novel components of Arabidopsis-endophyte interaction that can benefit downstream biomass deconstruction. United States: N. p., 2016.
Web. doi:10.3389/fpls.2016.00024.
Zhao, Shuai, Wei, Hui, Lin, Chien -Yuan, Zeng, Yining, Tucker, Melvin P., Himmel, Michael E., & Ding, Shi -You. Burkholderia phytofirmans inoculation-induced changes on the shoot cell anatomy and iron accumulation reveal novel components of Arabidopsis-endophyte interaction that can benefit downstream biomass deconstruction. United States. https://doi.org/10.3389/fpls.2016.00024
Zhao, Shuai, Wei, Hui, Lin, Chien -Yuan, Zeng, Yining, Tucker, Melvin P., Himmel, Michael E., and Ding, Shi -You. Fri .
"Burkholderia phytofirmans inoculation-induced changes on the shoot cell anatomy and iron accumulation reveal novel components of Arabidopsis-endophyte interaction that can benefit downstream biomass deconstruction". United States. https://doi.org/10.3389/fpls.2016.00024. https://www.osti.gov/servlets/purl/1240076.
@article{osti_1240076,
title = {Burkholderia phytofirmans inoculation-induced changes on the shoot cell anatomy and iron accumulation reveal novel components of Arabidopsis-endophyte interaction that can benefit downstream biomass deconstruction},
author = {Zhao, Shuai and Wei, Hui and Lin, Chien -Yuan and Zeng, Yining and Tucker, Melvin P. and Himmel, Michael E. and Ding, Shi -You},
abstractNote = {In this study, it is known that plant growth promoting bacteria (PGPB) elicit positive effects on plant growth and biomass yield. However, the actual mechanism behind the plant-PGPB interaction is poorly understood, and the literature is scarce regarding the thermochemical pretreatability and enzymatic degradability of biomass derived from PGPB-inoculated plants. Most recent transcriptional analyses of PGPB strain Burkholderia phytofirmans PsJN inoculating potato in literature and Arabidopsis in our present study have revealed the expression of genes for ferritin and the biosynthesis and transport of siderophores (i.e., the molecules with high affinity for iron), respectively. The expression of such genes in the shoots of PsJN-inoculated plants prompted us to propose that PsJN-inoculation can improve the host plant's iron uptake and accumulation, which facilitates the downstream plant biomass pretreatment and conversion to simple sugars. In this study, we employed B. phytofirmans PsJN to inoculate the Arabidopsis thaliana plants, and conducted the first investigation for its effects on the biomass yield, the anatomical organization of stems, the iron accumulation, and the pretreatment and enzymatic hydrolysis of harvested biomass. The results showed that the strain PsJN stimulated plant growth in the earlier period of plant development and enlarged the cell size of stem piths, and it also indeed enhanced the essential metals uptake and accumulation in host plants. Moreover, we found that the PsJN-inoculated plant biomass released more glucose and xylose after hot water pretreatment and subsequent co-saccharification, which provided a novel insight into development of lignocellulosic biofuels from renewable biomass resources.},
doi = {10.3389/fpls.2016.00024},
journal = {Frontiers in Plant Science},
number = 3,
volume = 7,
place = {United States},
year = {Fri Jan 29 00:00:00 EST 2016},
month = {Fri Jan 29 00:00:00 EST 2016}
}
Web of Science
Figures / Tables:
Works referenced in this record:
An overview of key pretreatment processes employed for bioconversion of lignocellulosic biomass into biofuels and value added products
journal, September 2013
- Chaturvedi, Venkatesh; Verma, Pradeep
- 3 Biotech, Vol. 3, Issue 5
Corn stover pretreatment by inorganic salts and its effects on hemicellulose and cellulose degradation
journal, December 2009
- Liu, Li; Sun, Junshe; Cai, Chengye
- Bioresource Technology, Vol. 100, Issue 23
Expression and characterization of Acidothermus cellulolyticus E1 endoglucanase in transgenic duckweed Lemna minor 8627
journal, November 2007
- Sun, Ye; Cheng, Jay J.; Himmel, Michael E.
- Bioresource Technology, Vol. 98, Issue 15, p. 2866-2872
Analysis of Transgenic Glycoside Hydrolases Expressed in Plants: T. reesei CBH I and A. cellulolyticus EI
book, January 2012
- Brunecky, Roman; Baker, John O.; Wei, Hui
- Biomass Conversion
Endophytic Colonization of Vitis vinifera L. by Plant Growth-Promoting Bacterium Burkholderia sp. Strain PsJN
journal, April 2005
- Compant, S.; Reiter, B.; Sessitsch, A.
- Applied and Environmental Microbiology, Vol. 71, Issue 4
Complete Genome Sequence of the Plant Growth-Promoting Endophyte Burkholderia phytofirmans Strain PsJN
journal, May 2011
- Weilharter, A.; Mitter, B.; Shin, M. V.
- Journal of Bacteriology, Vol. 193, Issue 13
Effects and Mechanism of Metal Chloride Salts on Pretreatment and Enzymatic Digestibility of Corn Stover
journal, January 2013
- Kamireddy, Srinivas R.; Li, Jinbao; Tucker, Melvin
- Industrial & Engineering Chemistry Research, Vol. 52, Issue 5
Potato cytosine methylation and gene expression changes induced by a beneficial bacterial endophyte, Burkholderia phytofirmans strain PsJN
journal, January 2012
- Da, Kedong; Nowak, Jerzy; Flinn, Barry
- Plant Physiology and Biochemistry, Vol. 50
Heterologous Expression, Purification, and Characterization of an L-Ornithine N5-Hydroxylase Involved in Pyoverdine Siderophore Biosynthesis in Pseudomonas aeruginosa
journal, October 2006
- Ge, L.; Seah, S. Y. K.
- Journal of Bacteriology, Vol. 188, Issue 20
The crystal structure of Dps, a ferritin homolog that binds and protects DNA
journal, April 1998
- Grant, R. A.; Filman, D. J.; Finkel, S. E.
- Nature Structural Biology, Vol. 5, Issue 4
Expression of l-ornithine Nδ-oxygenase (PvdA) in fluorescent Pseudomonas species: an immunochemical and in silico study
journal, January 2004
- Putignani, Lorenza; Ambrosi, Cecilia; Ascenzi, Paolo
- Biochemical and Biophysical Research Communications, Vol. 313, Issue 2
Switchgrass Field Performance on Two Soils as Affected by Bacterization of Seedlings with Burkholderia phytofirmans Strain PsJN
journal, September 2014
- Lowman, J. Scott; Lava-Chavez, Alejandra; Kim-Dura, Seonhwa
- BioEnergy Research, Vol. 8, Issue 1
Heterologous expression of glycosyl hydrolases in planta: a new departure for biofuels
journal, August 2008
- Taylor, Larry E.; Dai, Ziyu; Decker, Stephen R.
- Trends in Biotechnology, Vol. 26, Issue 8
ORIGINAL RESEARCH: Lignocellulose recalcitrance screening by integrated high-throughput hydrothermal pretreatment and enzymatic saccharification
journal, April 2010
- Selig, Michael J.; Tucker, Melvin P.; Sykes, Robert W.
- Industrial Biotechnology, Vol. 6, Issue 2
Biomass Recalcitrance: Engineering Plants and Enzymes for Biofuels Production
journal, February 2007
- Himmel, M. E.; Ding, S.-Y.; Johnson, D. K.
- Science, Vol. 315, Issue 5813, p. 804-807
Mechanisms and applications of plant growth promoting rhizobacteria: Current perspective
journal, January 2014
- Ahemad, Munees; Kibret, Mulugeta
- Journal of King Saud University - Science, Vol. 26, Issue 1
Lignin plays a negative role in the biochemical process for producing lignocellulosic biofuels
journal, June 2014
- Zeng, Yining; Zhao, Shuai; Yang, Shihui
- Current Opinion in Biotechnology, Vol. 27
Elucidating the role of ferrous ion cocatalyst in enhancing dilute acid pretreatment of lignocellulosic biomass
journal, January 2011
- Wei, Hui; Donohoe, Bryon S.; Vinzant, Todd B.
- Biotechnology for Biofuels, Vol. 4, Issue 1
Increase in 4-Coumaryl Alcohol Units during Lignification in Alfalfa ( Medicago sativa ) Alters the Extractability and Molecular Weight of Lignin
journal, October 2010
- Ziebell, Angela; Gracom, Kristen; Katahira, Rui
- Journal of Biological Chemistry, Vol. 285, Issue 50
Quorum Sensing and Indole-3-Acetic Acid Degradation Play a Role in Colonization and Plant Growth Promotion of Arabidopsis thaliana by Burkholderia phytofirmans PsJN
journal, May 2013
- Zúñiga, Ana; Poupin, María Josefina; Donoso, Raúl
- Molecular Plant-Microbe Interactions, Vol. 26, Issue 5
Self-Assembly in the Ferritin Nano-Cage Protein Superfamily
journal, August 2011
- Zhang, Yu; Orner, Brendan P.
- International Journal of Molecular Sciences, Vol. 12, Issue 8
Drought stress amelioration in wheat through inoculation with Burkholderia phytofirmans strain PsJN
journal, November 2013
- Naveed, Muhammad; Hussain, M. Baqir; Zahir, Zahir A.
- Plant Growth Regulation, Vol. 73, Issue 2
Effects of different pretreatment methods on chemical composition of sugarcane bagasse and enzymatic hydrolysis
journal, September 2013
- Gao, Yueshu; Xu, Jingliang; Zhang, Yu
- Bioresource Technology, Vol. 144
Enhancement of Chilling Resistance of Inoculated Grapevine Plantlets with a Plant Growth-Promoting Rhizobacterium, Burkholderia phytofirmans Strain PsJN
journal, September 2006
- Ait Barka, E.; Nowak, J.; Clement, C.
- Applied and Environmental Microbiology, Vol. 72, Issue 11
Applications of free living plant growth-promoting rhizobacteria
journal, August 2004
- Lucy, M.; Reed, E.; R. Glick, Bernard
- Antonie van Leeuwenhoek, Vol. 86, Issue 1
Oligomer saccharide reduction during dilute acid pretreatment co-catalyzed with Lewis acids on corn stover biomass
journal, January 2013
- Degenstein, John; Kamireddy, Srinivas Reddy; Tucker, Melvin P.
- International Journal of Agricultural and Biological Engineering, Vol. 6, Issue 2, 54-62
Transcriptional Regulation of Grass Secondary Cell Wall Biosynthesis: Playing Catch-Up with Arabidopsis thaliana
journal, January 2012
- Handakumbura, Pubudu P.; Hazen, Samuel P.
- Frontiers in Plant Science, Vol. 3
Transgenic ferritin overproduction enhances thermochemical pretreatments in Arabidopsis
journal, January 2015
- Wei, Hui; Yang, Haibing; Ciesielski, Peter N.
- Biomass and Bioenergy, Vol. 72
Effect of mechanical disruption on the effectiveness of three reactors used for dilute acid pretreatment of corn stover Part 2: morphological and structural substrate analysis
journal, January 2014
- Ciesielski, Peter N.; Wang, Wei; Chen, Xiaowen
- Biotechnology for Biofuels, Vol. 7, Issue 1
Early growth promotion and leaf level physiology changes in Burkholderia phytofirmans strain PsJN inoculated switchgrass
journal, January 2015
- Wang, Bingxue; Mei, Chuansheng; Seiler, John R.
- Plant Physiology and Biochemistry, Vol. 86
A cost-effective acid digestion method using closed polypropylene tubes for inductively coupled plasma optical emission spectrometry (ICP-OES) analysis of plant essential elements
journal, January 2011
- Wheal, Matthew S.; Fowles, Teresa O.; Palmer, Lyndon T.
- Analytical Methods, Vol. 3, Issue 12
Plant growth-promoting rhizobacteria and root system functioning
journal, January 2013
- Vacheron, Jordan; Desbrosses, Guilhem; Bouffaud, Marie-Lara
- Frontiers in Plant Science, Vol. 4
Growth Enhancement and Developmental Modifications of in Vitro Grown Potato ( Solanum tuberosum spp. tuberosum ) as Affected by a Nonfluorescent Pseudomonas sp.
journal, July 1991
- Frommel, Marcos I.; Nowak, Jerzy; Lazarovits, George
- Plant Physiology, Vol. 96, Issue 3
In planta expression of A. cellulolyticus Cel5A endocellulase reduces cell wall recalcitrance in tobacco and maize
journal, January 2011
- Brunecky, Roman; Selig, Michael J.; Vinzant, Todd B.
- Biotechnology for Biofuels, Vol. 4, Issue 1
Chemically Induced Conditional Rescue of the Reduced Epidermal Fluorescence8 Mutant of Arabidopsis Reveals Rapid Restoration of Growth and Selective Turnover of Secondary Metabolite Pools
journal, December 2013
- Kim, Jeong Im; Ciesielski, Peter N.; Donohoe, Bryon S.
- Plant Physiology, Vol. 164, Issue 2
How Does Plant Cell Wall Nanoscale Architecture Correlate with Enzymatic Digestibility?
journal, November 2012
- Ding, S. -Y.; Liu, Y. -S.; Zeng, Y.
- Science, Vol. 338, Issue 6110
A Revised Medium for Rapid Growth and Bio Assays with Tobacco Tissue Cultures
journal, July 1962
- Murashige, Toshio; Skoog, Folke
- Physiologia Plantarum, Vol. 15, Issue 3, p. 473-497
Engineering plant cell walls: tuning lignin monomer composition for deconstructable biofuel feedstocks or resilient biomaterials
journal, January 2014
- Ciesielski, Peter N.; Resch, Michael G.; Hewetson, Barron
- Green Chemistry, Vol. 16, Issue 5, p. 2627-2635
Genetic Resources for Maize Cell Wall Biology
journal, November 2009
- Penning, Bryan W.; Hunter, Charles T.; Tayengwa, Reuben
- Plant Physiology, Vol. 151, Issue 4
Endophytic colonization of Vitis vinifera L. by Burkholderia phytofirmans strain PsJN: from the rhizosphere to inflorescence tissues: Grapevine colonization by B. phytofirmans strain PsJN
journal, January 2008
- Compant, Stéphane; Kaplan, Hervé; Sessitsch, Angela
- FEMS Microbiology Ecology, Vol. 63, Issue 1
The presence of a 1-aminocyclopropane-1-carboxylate (ACC) deaminase deletion mutation alters the physiology of the endophytic plant growth-promoting bacterium Burkholderia phytofirmans PsJN
journal, July 2009
- Sun, Yili; Cheng, Zhenyu; Glick, Bernard R.
- FEMS Microbiology Letters, Vol. 296, Issue 1
Cloning and nucleotide sequence of the pvdA gene encoding the pyoverdin biosynthetic enzyme L-ornithine N5-oxygenase in Pseudomonas aeruginosa.
journal, February 1994
- Visca, P.; Ciervo, A.; Orsi, N.
- Journal of Bacteriology, Vol. 176, Issue 4
Optimization of Acidothermus cellulolyticus Endoglucanase (E1) Production in Transgenic Tobacco Plants by Transcriptional, Post-transcription and Post-translational Modification
journal, October 2005
- Dai, Ziyu; Hooker, Brian S.; Quesenberry, Ryan D.
- Transgenic Research, Vol. 14, Issue 5
Burkholderia phytofirmans sp. nov., a novel plant-associated bacterium with plant-beneficial properties
journal, May 2005
- Sessitsch, A.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 55, Issue 3
Advances in the Application of Plant Growth-Promoting Rhizobacteria in Phytoremediation of Heavy Metals
book, January 2013
- Tak, Hamid Iqbal; Ahmad, Faheem; Babalola, Olubukola Oluranti
- Reviews of Environmental Contamination and Toxicology Volume 223
Growth promotion and colonization of switchgrass (Panicum virgatum) cv. Alamo by bacterial endophyte Burkholderia phytofirmans strain PsJN
journal, January 2012
- Kim, Seonhwa; Lowman, Scott; Hou, Guichuan
- Biotechnology for Biofuels, Vol. 5, Issue 1
Ferritin: Structure, Gene Regulation, and Cellular Function in Animals, Plants, and Microorganisms
journal, June 1987
- Theil, E. C.
- Annual Review of Biochemistry, Vol. 56, Issue 1
The Fragile Fiber1 Kinesin Contributes to Cortical Microtubule-Mediated Trafficking of Cell Wall Components
journal, February 2015
- Zhu, Chuanmei; Ganguly, Anindya; Baskin, Tobias I.
- Plant Physiology, Vol. 167, Issue 3
Biomass pretreatment: Fundamentals toward application
journal, November 2011
- Agbor, Valery B.; Cicek, Nazim; Sparling, Richard
- Biotechnology Advances, Vol. 29, Issue 6
Comparative genome analysis of Burkholderia phytofirmans PsJN reveals a wide spectrum of endophytic lifestyles based on interaction strategies with host plants
journal, January 2013
- Mitter, Birgit; Petric, Alexandra; Shin, Maria W.
- Frontiers in Plant Science, Vol. 4
Transcriptome Profiling of the Endophyte Burkholderia phytofirmans PsJN Indicates Sensing of the Plant Environment and Drought Stress
journal, September 2015
- Sheibani-Tezerji, Raheleh; Rattei, Thomas; Sessitsch, Angela
- mBio, Vol. 6, Issue 5
Disruption of Mediator rescues the stunted growth of a lignin-deficient Arabidopsis mutant
journal, March 2014
- Bonawitz, Nicholas D.; Kim, Jeong Im; Tobimatsu, Yuki
- Nature, Vol. 509, Issue 7500, p. 376-380
NIR and Py-mbms coupled with multivariate data analysis as a high-throughput biomass characterization technique: a review
journal, August 2014
- Xiao, Li; Wei, Hui; Himmel, Michael E.
- Frontiers in Plant Science, Vol. 5
Biochemical Characterization of a Flavin Adenine Dinculeotide-Dependent Monooxygenase, Ornithine Hydroxylase from Pseudomonas aeruginosa , Suggests a Novel Reaction Mechanism †
journal, October 2007
- Meneely, Kathleen M.; Lamb, Audrey L.
- Biochemistry, Vol. 46, Issue 42
Effects of the Plant Growth-Promoting Bacterium Burkholderia phytofirmans PsJN throughout the Life Cycle of Arabidopsis thaliana
journal, July 2013
- Poupin, María Josefina; Timmermann, Tania; Vega, Andrea
- PLoS ONE, Vol. 8, Issue 7
Increased drought stress resilience of maize through endophytic colonization by Burkholderia phytofirmans PsJN and Enterobacter sp. FD17
journal, January 2014
- Naveed, Muhammad; Mitter, Birgit; Reichenauer, Thomas G.
- Environmental and Experimental Botany, Vol. 97
Endophytic Burkholderia sp. strain PsJN Improves Plant Growth and Phytoremediation of Soil Irrigated with Textile Effluent : Bacterial Inoculation Enhanced Plant Biomass Production and Soil Remediation
journal, December 2013
- Afzal, Muhammad; Shabir, Ghulam; Tahseen, Razia
- CLEAN - Soil, Air, Water, Vol. 42, Issue 9
Role of Ornibactin Biosynthesis in the Virulence ofBurkholderia cepacia: Characterization of pvdA, the Gene Encoding l-OrnithineN5-Oxygenase
journal, September 1999
- Sokol, P. A.; Darling, P.; Woods, D. E.
- Infection and Immunity, Vol. 67, Issue 9
Endophytic Burkholderia sp. strain PsJN Improves Plant Growth and Phytoremediation of Soil Irrigated with Textile Effluent : Bacterial Inoculation Enhanced Plant Biomass Production and Soil Remediation
journal, December 2013
- Afzal, Muhammad; Shabir, Ghulam; Tahseen, Razia
- CLEAN - Soil, Air, Water, Vol. 42, Issue 9
Advances in the Application of Plant Growth-Promoting Rhizobacteria in Phytoremediation of Heavy Metals
book, January 2013
- Tak, Hamid Iqbal; Ahmad, Faheem; Babalola, Olubukola Oluranti
- Reviews of Environmental Contamination and Toxicology Volume 223
Enterobacter hormaechei as Plant Growth-Promoting Bacteria for Improvement in Lycopersicum esculentum
journal, February 2021
- Ranawat, Bablesh; Bachani, Pooja; Singh, Aneesha
- Current Microbiology, Vol. 78, Issue 4
Switchgrass Field Performance on Two Soils as Affected by Bacterization of Seedlings with Burkholderia phytofirmans Strain PsJN
journal, September 2014
- Lowman, J. Scott; Lava-Chavez, Alejandra; Kim-Dura, Seonhwa
- BioEnergy Research, Vol. 8, Issue 1
An overview of key pretreatment processes employed for bioconversion of lignocellulosic biomass into biofuels and value added products
journal, September 2013
- Chaturvedi, Venkatesh; Verma, Pradeep
- 3 Biotech, Vol. 3, Issue 5
Expression of l-ornithine Nδ-oxygenase (PvdA) in fluorescent Pseudomonas species: an immunochemical and in silico study
journal, January 2004
- Putignani, Lorenza; Ambrosi, Cecilia; Ascenzi, Paolo
- Biochemical and Biophysical Research Communications, Vol. 313, Issue 2
Transgenic ferritin overproduction enhances thermochemical pretreatments in Arabidopsis
journal, January 2015
- Wei, Hui; Yang, Haibing; Ciesielski, Peter N.
- Biomass and Bioenergy, Vol. 72
Expression and characterization of Acidothermus cellulolyticus E1 endoglucanase in transgenic duckweed Lemna minor 8627
journal, November 2007
- Sun, Ye; Cheng, Jay J.; Himmel, Michael E.
- Bioresource Technology, Vol. 98, Issue 15, p. 2866-2872
Corn stover pretreatment by inorganic salts and its effects on hemicellulose and cellulose degradation
journal, December 2009
- Liu, Li; Sun, Junshe; Cai, Chengye
- Bioresource Technology, Vol. 100, Issue 23
Effects of different pretreatment methods on chemical composition of sugarcane bagasse and enzymatic hydrolysis
journal, September 2013
- Gao, Yueshu; Xu, Jingliang; Zhang, Yu
- Bioresource Technology, Vol. 144
Biomass pretreatment: Fundamentals toward application
journal, November 2011
- Agbor, Valery B.; Cicek, Nazim; Sparling, Richard
- Biotechnology Advances, Vol. 29, Issue 6
Lignin plays a negative role in the biochemical process for producing lignocellulosic biofuels
journal, June 2014
- Zeng, Yining; Zhao, Shuai; Yang, Shihui
- Current Opinion in Biotechnology, Vol. 27
Increased drought stress resilience of maize through endophytic colonization by Burkholderia phytofirmans PsJN and Enterobacter sp. FD17
journal, January 2014
- Naveed, Muhammad; Mitter, Birgit; Reichenauer, Thomas G.
- Environmental and Experimental Botany, Vol. 97
Mechanisms and applications of plant growth promoting rhizobacteria: Current perspective
journal, January 2014
- Ahemad, Munees; Kibret, Mulugeta
- Journal of King Saud University - Science, Vol. 26, Issue 1
Early growth promotion and leaf level physiology changes in Burkholderia phytofirmans strain PsJN inoculated switchgrass
journal, January 2015
- Wang, Bingxue; Mei, Chuansheng; Seiler, John R.
- Plant Physiology and Biochemistry, Vol. 86
Heterologous expression of glycosyl hydrolases in planta: a new departure for biofuels
journal, August 2008
- Taylor, Larry E.; Dai, Ziyu; Decker, Stephen R.
- Trends in Biotechnology, Vol. 26, Issue 8
Biochemical Characterization of a Flavin Adenine Dinculeotide-Dependent Monooxygenase, Ornithine Hydroxylase from Pseudomonas aeruginosa , Suggests a Novel Reaction Mechanism †
journal, October 2007
- Meneely, Kathleen M.; Lamb, Audrey L.
- Biochemistry, Vol. 46, Issue 42
Effects and Mechanism of Metal Chloride Salts on Pretreatment and Enzymatic Digestibility of Corn Stover
journal, January 2013
- Kamireddy, Srinivas R.; Li, Jinbao; Tucker, Melvin
- Industrial & Engineering Chemistry Research, Vol. 52, Issue 5
Disruption of Mediator rescues the stunted growth of a lignin-deficient Arabidopsis mutant
journal, March 2014
- Bonawitz, Nicholas D.; Kim, Jeong Im; Tobimatsu, Yuki
- Nature, Vol. 509, Issue 7500, p. 376-380
A cost-effective acid digestion method using closed polypropylene tubes for inductively coupled plasma optical emission spectrometry (ICP-OES) analysis of plant essential elements
journal, January 2011
- Wheal, Matthew S.; Fowles, Teresa O.; Palmer, Lyndon T.
- Analytical Methods, Vol. 3, Issue 12
ORIGINAL RESEARCH: Lignocellulose recalcitrance screening by integrated high-throughput hydrothermal pretreatment and enzymatic saccharification
journal, April 2010
- Selig, Michael J.; Tucker, Melvin P.; Sykes, Robert W.
- Industrial Biotechnology, Vol. 6, Issue 2
Burkholderia phytofirmans PsJN Primes Vitis vinifera L. and Confers a Better Tolerance to Low Nonfreezing Temperatures
journal, February 2012
- Theocharis, Andreas; Bordiec, Sophie; Fernandez, Olivier
- Molecular Plant-Microbe Interactions, Vol. 25, Issue 2
Burkholderia phytofirmans sp. nov., a novel plant-associated bacterium with plant-beneficial properties
journal, May 2005
- Sessitsch, A.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 55, Issue 3
Genetic Resources for Maize Cell Wall Biology
journal, November 2009
- Penning, Bryan W.; Hunter, Charles T.; Tayengwa, Reuben
- Plant Physiology, Vol. 151, Issue 4
Chemically Induced Conditional Rescue of the Reduced Epidermal Fluorescence8 Mutant of Arabidopsis Reveals Rapid Restoration of Growth and Selective Turnover of Secondary Metabolite Pools
journal, December 2013
- Kim, Jeong Im; Ciesielski, Peter N.; Donohoe, Bryon S.
- Plant Physiology, Vol. 164, Issue 2
The Fragile Fiber1 Kinesin Contributes to Cortical Microtubule-Mediated Trafficking of Cell Wall Components
journal, February 2015
- Zhu, Chuanmei; Ganguly, Anindya; Baskin, Tobias I.
- Plant Physiology, Vol. 167, Issue 3
A Revised Medium for Rapid Growth and Bio Assays with Tobacco Tissue Cultures
journal, July 1962
- Murashige, Toshio; Skoog, Folke
- Physiologia Plantarum, Vol. 15, Issue 3, p. 473-497
Endophytic colonization of Vitis vinifera L. by Burkholderia phytofirmans strain PsJN: from the rhizosphere to inflorescence tissues: Grapevine colonization by B. phytofirmans strain PsJN
journal, January 2008
- Compant, Stéphane; Kaplan, Hervé; Sessitsch, Angela
- FEMS Microbiology Ecology, Vol. 63, Issue 1
The presence of a 1-aminocyclopropane-1-carboxylate (ACC) deaminase deletion mutation alters the physiology of the endophytic plant growth-promoting bacterium Burkholderia phytofirmans PsJN
journal, July 2009
- Sun, Yili; Cheng, Zhenyu; Glick, Bernard R.
- FEMS Microbiology Letters, Vol. 296, Issue 1
Biomass Recalcitrance: Engineering Plants and Enzymes for Biofuels Production
journal, February 2007
- Himmel, M. E.; Ding, S.-Y.; Johnson, D. K.
- Science, Vol. 315, Issue 5813, p. 804-807
How Does Plant Cell Wall Nanoscale Architecture Correlate with Enzymatic Digestibility?
journal, November 2012
- Ding, S. -Y.; Liu, Y. -S.; Zeng, Y.
- Science, Vol. 338, Issue 6110
Cloning and nucleotide sequence of the pvdA gene encoding the pyoverdin biosynthetic enzyme L-ornithine N5-oxygenase in Pseudomonas aeruginosa.
journal, February 1994
- Visca, P.; Ciervo, A.; Orsi, N.
- Journal of Bacteriology, Vol. 176, Issue 4
Genetic and Transcriptional Analysis of the Siderophore Malleobactin Biosynthesis and Transport Genes in the Human Pathogen Burkholderia pseudomallei K96243
journal, February 2006
- Alice, A. F.; Lopez, C. S.; Lowe, C. A.
- Journal of Bacteriology, Vol. 188, Issue 4
Ferritin: Structure, Gene Regulation, and Cellular Function in Animals, Plants, and Microorganisms
journal, June 1987
- Theil, E. C.
- Annual Review of Biochemistry, Vol. 56, Issue 1
In planta expression of A. cellulolyticus Cel5A endocellulase reduces cell wall recalcitrance in tobacco and maize
journal, January 2011
- Brunecky, Roman; Selig, Michael J.; Vinzant, Todd B.
- Biotechnology for Biofuels, Vol. 4, Issue 1
Elucidating the role of ferrous ion cocatalyst in enhancing dilute acid pretreatment of lignocellulosic biomass
journal, January 2011
- Wei, Hui; Donohoe, Bryon S.; Vinzant, Todd B.
- Biotechnology for Biofuels, Vol. 4, Issue 1
Growth promotion and colonization of switchgrass (Panicum virgatum) cv. Alamo by bacterial endophyte Burkholderia phytofirmans strain PsJN
journal, January 2012
- Kim, Seonhwa; Lowman, Scott; Hou, Guichuan
- Biotechnology for Biofuels, Vol. 5, Issue 1
Effect of mechanical disruption on the effectiveness of three reactors used for dilute acid pretreatment of corn stover Part 2: morphological and structural substrate analysis
journal, January 2014
- Ciesielski, Peter N.; Wang, Wei; Chen, Xiaowen
- Biotechnology for Biofuels, Vol. 7, Issue 1
Effects of the Plant Growth-Promoting Bacterium Burkholderia phytofirmans PsJN throughout the Life Cycle of Arabidopsis thaliana
journal, July 2013
- Poupin, María Josefina; Timmermann, Tania; Vega, Andrea
- PLoS ONE, Vol. 8, Issue 7
Expression of Trichoderma reesei Exo-Cellobiohydrolase I in Transgenic Tobacco Leaves and Calli
journal, January 1999
- Dai, Ziyu; Hooker, Brian S.; Quesenberry, Ryan D.
- Applied Biochemistry and Biotechnology, Vol. 79, Issue 1-3
Transcriptional Regulation of Grass Secondary Cell Wall Biosynthesis: Playing Catch-Up with Arabidopsis thaliana
journal, January 2012
- Handakumbura, Pubudu P.; Hazen, Samuel P.
- Frontiers in Plant Science, Vol. 3
Comparative genome analysis of Burkholderia phytofirmans PsJN reveals a wide spectrum of endophytic lifestyles based on interaction strategies with host plants
journal, January 2013
- Mitter, Birgit; Petric, Alexandra; Shin, Maria W.
- Frontiers in Plant Science, Vol. 4
NIR and Py-mbms coupled with multivariate data analysis as a high-throughput biomass characterization technique: a review
journal, August 2014
- Xiao, Li; Wei, Hui; Himmel, Michael E.
- Frontiers in Plant Science, Vol. 5
Self-Assembly in the Ferritin Nano-Cage Protein Superfamily
journal, August 2011
- Zhang, Yu; Orner, Brendan P.
- International Journal of Molecular Sciences, Vol. 12, Issue 8
Works referencing / citing this record:
Colonization of Arabidopsis thaliana by Herbaspirillum seropedicae promotes its growth and changes its proteomic profile
journal, August 2019
- Leandro, Mariana Ramos; Rangel, Patrícia Louzada; dos Santos, Tamires Cruz
- Plant and Soil, Vol. 443, Issue 1-2
Bacteria in the plant tissue culture environment
journal, December 2016
- Orlikowska, Teresa; Nowak, Katarzyna; Reed, Barbara
- Plant Cell, Tissue and Organ Culture (PCTOC), Vol. 128, Issue 3
Volatile-Mediated Effects Predominate in Paraburkholderia phytofirmans Growth Promotion and Salt Stress Tolerance of Arabidopsis thaliana
journal, November 2016
- Ledger, Thomas; Rojas, Sandy; Timmermann, Tania
- Frontiers in Microbiology, Vol. 7
A New Approach to Modify Plant Microbiomes and Traits by Introducing Beneficial Bacteria at Flowering into Progeny Seeds
journal, January 2017
- Mitter, Birgit; Pfaffenbichler, Nikolaus; Flavell, Richard
- Frontiers in Microbiology, Vol. 8
Paraburkholderia phytofirmans PsJN-Plants Interaction: From Perception to the Induced Mechanisms
journal, August 2018
- Esmaeel, Qassim; Miotto, Lidiane; Rondeau, Marine
- Frontiers in Microbiology, Vol. 9
Alleviation of Salinity Induced Oxidative Stress in Chenopodium quinoa by Fe Biofortification and Biochar—Endophyte Interaction
journal, January 2020
- Naveed, Muhammad; Ramzan, Natasha; Mustafa, Adnan
- Agronomy, Vol. 10, Issue 2
Figures / Tables found in this record: