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Title: Genome sequence and annotation of Trichoderma parareesei, the ancestor of the cellulase producer Trichoderma reesei

Abstract

The filamentous fungus Trichoderma parareesei is the asexually reproducing ancestor of Trichoderma reesei, the holomorphic industrial producer of cellulase and hemicellulase. Here, we present the genome sequence of the T. parareesei type strain CBS 125925, which contains genes for 9,318 proteins.

Authors:
 [1];  [2];  [3];  [3];  [3];  [3];  [4];  [5];  [5];  [6];  [3];  [3]
+ Show Author Affiliations
  1. TU Wien, Vienna (Austria). Institute of Chemical Engineering; Nanjing Agricultural University, Nanjing (China). Jiangsu Key Lab for Organic Waste Utilization and National Engineering Research Centre for Organic-Based Fertilizers.
  2. Pacific Northwest National Laboratory, Richland, WA (United States)
  3. TU Wien, Vienna (Austria). Institute of Chemical Engineering.
  4. Pacific Northwest National Laboratory; Richland, WA (United States)
  5. Nanjing Agricultural University, Nanjing (China). Jiangsu Key Lab for Organic Waste Utilization and National Engineering Research Centre for Organic-Based Fertilizers.
  6. Oregon State University, Corvallis, OR (United States). Department of Biochemistry and Biophysics.
Publication Date:
Research Org.:
Pacific Northwest National Lab. (PNNL), Richland, WA (United States)
Sponsoring Org.:
USDOE; Austrian Science Fund (FWF)
OSTI Identifier:
1211607
Grant/Contract Number:  
AC05-76RL01830; I-1249 and P25613-B20
Resource Type:
Accepted Manuscript
Journal Name:
Genome Announcements
Additional Journal Information:
Journal Volume: 3; Journal Issue: 4; Journal ID: ISSN 2169-8287
Publisher:
American Society for Microbiology
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES

Citation Formats

Yang, Dongqing, Pomraning, Kyle, Kopchinskiy, Alexey, Karimi, Aghcheh Razieh, Atanasova, Lea, Chenthamara, Komal, Baker, Scott E., Zhang, Ruifu, Shen, Qirong, Freitag, Michael, Kubicek, Christian P., and Druzhinina, Irina S. Genome sequence and annotation of Trichoderma parareesei, the ancestor of the cellulase producer Trichoderma reesei. United States: N. p., 2015. Web. doi:10.1128/genomeA.00885-15.
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Yang, Dongqing, Pomraning, Kyle, Kopchinskiy, Alexey, Karimi, Aghcheh Razieh, Atanasova, Lea, Chenthamara, Komal, Baker, Scott E., Zhang, Ruifu, Shen, Qirong, Freitag, Michael, Kubicek, Christian P., & Druzhinina, Irina S. Genome sequence and annotation of Trichoderma parareesei, the ancestor of the cellulase producer Trichoderma reesei. United States. https://doi.org/10.1128/genomeA.00885-15
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Yang, Dongqing, Pomraning, Kyle, Kopchinskiy, Alexey, Karimi, Aghcheh Razieh, Atanasova, Lea, Chenthamara, Komal, Baker, Scott E., Zhang, Ruifu, Shen, Qirong, Freitag, Michael, Kubicek, Christian P., and Druzhinina, Irina S. Thu . "Genome sequence and annotation of Trichoderma parareesei, the ancestor of the cellulase producer Trichoderma reesei". United States. https://doi.org/10.1128/genomeA.00885-15. https://www.osti.gov/servlets/purl/1211607.
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@article{osti_1211607,
title = {Genome sequence and annotation of Trichoderma parareesei, the ancestor of the cellulase producer Trichoderma reesei},
author = {Yang, Dongqing and Pomraning, Kyle and Kopchinskiy, Alexey and Karimi, Aghcheh Razieh and Atanasova, Lea and Chenthamara, Komal and Baker, Scott E. and Zhang, Ruifu and Shen, Qirong and Freitag, Michael and Kubicek, Christian P. and Druzhinina, Irina S.},
abstractNote = {The filamentous fungus Trichoderma parareesei is the asexually reproducing ancestor of Trichoderma reesei, the holomorphic industrial producer of cellulase and hemicellulase. Here, we present the genome sequence of the T. parareesei type strain CBS 125925, which contains genes for 9,318 proteins.},
doi = {10.1128/genomeA.00885-15},
journal = {Genome Announcements},
number = 4,
volume = 3,
place = {United States},
year = {Thu Aug 13 00:00:00 EDT 2015},
month = {Thu Aug 13 00:00:00 EDT 2015}
}
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Journal Article:
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Publisher's Version of Record
https://doi.org/10.1128/genomeA.00885-15
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Works referenced in this record:

Heterologous protein expression in Hypocrea jecorina: A historical perspective and new developments
journal, January 2015

Evolution and Ecophysiology of the Industrial Producer Hypocrea jecorina (Anamorph Trichoderma reesei) and a New Sympatric Agamospecies Related to It
journal, February 2010

Genetic and metabolic diversity of Trichoderma: a case study on South-East Asian isolates
journal, April 2003

An oligonucleotide barcode for species identification in Trichoderma and Hypocrea
journal, October 2005

  • Druzhinina, Irina S.; Kopchinskiy, Alexei G.; Komoń, Monika
  • Fungal Genetics and Biology, Vol. 42, Issue 10
  • DOI: 10.1016/j.fgb.2005.06.007

Clonal Species Trichoderma parareesei sp. nov. Likely Resembles the Ancestor of the Cellulase Producer Hypocrea jecorina/T. reesei
journal, September 2010

  • Atanasova, L.; Jaklitsch, W. M.; Komon-Zelazowska, M.
  • Applied and Environmental Microbiology, Vol. 76, Issue 21
  • DOI: 10.1128/AEM.01184-10

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
journal, February 2008

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
journal, January 2008

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