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  1. Theory of topological defects and textures in two-dimensional quantum orders with spontaneous symmetry breaking

    In this article, we consider two-dimensional (2d) quantum many-body systems with long-range orders, where the only gapless excitations in the spectrum are Goldstone modes of spontaneously broken continuous symmetries. To understand the interplay between classical long-range order of local order parameters and quantum order of long-range entanglement in the ground states, we study the topological point defects and textures of order parameters in such systems. We show that the universal properties of point defects and textures are determined by the remnant symmetry enriched topological order in the symmetry-breaking ground states with a nonfluctuating order parameter, and provide a classification formore » their properties based on the inflation-restriction exact sequence. We highlight a few phenomena revealed by our theory framework. First, in the absence of intrinsic topological orders, we show a connection between the symmetry properties of point defects and textures to deconfined quantum criticality. Second, when the symmetry-breaking ground state has intrinsic topological orders, we show that the point defects can permute different anyons when braided around. They can also obey projective fusion rules in the sense that multiple vortices can fuse into an Abelian anyon, a phenomenon for which we coin “defect fractionalization.” Finally, we provide a formula to compute the fractional statistics and fractional quantum numbers carried by textures (skyrmions) in Abelian topological orders.« less
  2. Rotational symmetry protected edge and corner states in Abelian topological phases

    Spatial symmetries can enrich the topological classification of interacting quantum matter and endow systems with non-trivial strong topological invariants (protected by internal symmetries) with additional "weak" topological indices. In this paper, we study the edge physics of systems with a non-trivial shift invariant, which is protected by either a continuous $$\text{U}(1)_r$$ or discrete $$\text{C}_n$$ rotation symmetry, along with internal $$\text{U}(1)_c$$ charge conservation. Specifically, we construct an interface between two systems which have the same Chern number but are distinguished by their Wen-Zee shift and, through analytic arguments supported by numerics, show that the interface hosts counter-propagating gapless edge modes whichmore » cannot be gapped by arbitrary local symmetry-preserving perturbations. Using the Chern-Simons field theory description of two-dimensional Abelian topological orders, we then prove sufficient conditions for continuous rotation symmetry protected gapless edge states using two complementary approaches. One relies on the algebraic Lagrangian sub-algebra framework for gapped boundaries while the other uses a more physical flux insertion argument. For the case of discrete rotation symmetries, we extend the field theory approach to show the presence of fractional corner charges for Abelian topological orders with gappable edges, and compute them in the case where the Abelian topological order is placed on the two-dimensional surface of a Platonic solid. Finally, our work paves the way for studying the edge physics associated with spatial symmetries in symmetry enriched topological phases.« less
  3. Mesoscale Convective Systems Modulated by Convectively Coupled Equatorial Waves

    Mesoscale convective systems (MCSs) produce over 50% of tropical precipitation and account for the majority of extreme rainfall and flooding events. MCSs are considered the building blocks of larger-scale convectively coupled equatorial waves (CCEWs). While CCEWs can provide favorable environments for convection, how CCEWs can systematically impact organized convection and thereby MCS characteristics is less clear. We examine this question by analyzing a global MCS tracking data set. During the active phase of CCEWs, MCS frequency increases and MCSs rain harder, produce more lifetime total rain, and grow larger in size. The probability of extreme MCSs also elevates. These changesmore » are most pronounced when MCSs are associated with Kelvin waves and tropical depression-type waves while less so with the Madden-Julian Oscillation. Furthermore, these results can be benchmarks to improve model representation of MCS interactions with large-scale circulations and can be leveraged for operational forecasts of high-impact MCSs at extended lead times.« less
  4. Construction of bias-preserving operations for pair-cat codes

    Fault-tolerant quantum computation with depolarization error often requires demanding error threshold and resource overhead. If the operations can maintain high noise bias—dominated by dephasing error with small bit-flip error—we can achieve hardware-efficient fault-tolerant quantum computation with a more favorable error threshold. Distinct from two-level physical systems, multilevel systems (such as harmonic oscillators) can achieve a desirable set of bias-preserving quantum operations while using continuous engineered dissipation or Hamiltonian protection to stabilize to the encoding subspace. For example, cat codes stabilized with driven-dissipation or Kerr nonlinearity can possess a set of bias-preserving gates while continuously correcting bosonic dephasing error. However, catmore » codes are not compatible with continuous quantum error correction against excitation loss error, because it is challenging to continuously monitor the parity to correct photon loss errors. In this work, we generalize the bias-preserving operations to pair-cat codes, which can be regarded as a multimode generalization of cat codes, to be compatible with continuous quantum error correction against both bosonic loss and dephasing errors. In conclusion, our results open the door towards hardware-efficient robust quantum information processing with both bias-preserving operations and continuous quantum error correction simultaneously correcting bosonic loss and dephasing errors.« less
  5. Spin wavepackets in the Kagome ferromagnet Fe 3 Sn 2 : Propagation and precursors

    The propagation of spin waves in magnetically ordered systems has emerged as a potential means to shuttle quantum information over large distances. Conventionally, the arrival time of a spin wavepacket at a distance, d , is assumed to be determined by its group velocity, v g . Here, we report time-resolved optical measurements of wavepacket propagation in the Kagome ferromagnet Fe 3 Sn 2 that demonstrate the arrival of spin information at times significantly less than d / v g . We show that this spin wave “precursor” originates from the interaction of light with themore » unusual spectrum of magnetostatic modes in Fe 3 Sn 2 . Related effects may have far-reaching consequences toward realizing long-range, ultrafast spin wave transport in both ferromagnetic and antiferromagnetic systems.« less
  6. Chiral spin liquid with spinon Fermi surfaces in the spin-$$\frac{1}{2}$$ triangular Heisenberg model

    Here, we study the interplay of competing interactions in spin-$$\frac{1}{2}$$ triangular Heisenberg model through tuning the first- ($$J_1$$), second- ($$J_2$$), and third-neighbor ($$J_ 3$$) couplings. Based on a large-scale density-matrix renormalization group calculation, we identify a quantum phase diagram of the system and discover a gapless chiral spin-liquid (CSL) phase in the intermediate $$J_2$$ and $$J_ 3$$ regime. This CSL state spontaneously breaks time-reversal symmetry with finite scalar chiral order, and it has gapless excitations implied by a vanishing spin triplet gap and a finite central charge on the cylinder. Moreover, the central charge grows rapidly with the cylinder circumference,more » indicating emergent spinon Fermi surfaces. To understand the numerical results we propose a parton mean-field spin-liquid state, the U(1) staggered flux state, which breaks time-reversal symmetry with chiral edge modes by adding a Chern insulator mass to Dirac spinons in the U(1) Dirac spin liquid. This state also breaks lattice rotational symmetries and possesses two spinon Fermi surfaces driven by nonzero $$J_2$$ and $$J_3$$, which naturally explains the numerical results. This realizes an example of a gapless CSL state with coexisting spinon Fermi surfaces and chiral edge states, demonstrating the rich family of interesting quantum phases emergent from competing interactions in triangular-lattice magnets.« less
  7. Inference of Chromosome-Length Haplotypes Using Genomic Data of Three or a Few More Single Gametes

    Compared with genomic data of individual markers, haplotype data provide higher resolution for DNA variants, advancing our knowledge in genetics and evolution. Although many computational and experimental phasing methods have been developed for analyzing diploid genomes, it remains challenging to reconstruct chromosome-scale haplotypes at low cost, which constrains the utility of this valuable genetic resource. Gamete cells, the natural packaging of haploid complements, are ideal materials for phasing entire chromosomes because the majority of the haplotypic allele combinations has been preserved. Therefore, compared with the current diploid-based phasing methods, using haploid genomic data of single gametes may substantially reduce themore » complexity in inferring the donor’s chromosomal haplotypes. In this study, we developed the first easy-to-use R package, Hapi, for inferring chromosome-length haplotypes of individual diploid genomes with only a few gametes. Hapi outperformed other phasing methods when analyzing both simulated and real single gamete cell sequencing data sets. The results also suggested that chromosome-scale haplotypes may be inferred by using as few as three gametes, which has pushed the boundary to its possible limit. The single gamete cell sequencing technology allied with the cost-effective Hapi method will make large-scale haplotype-based genetic studies feasible and affordable, promoting the use of haplotype data in a wide range of research.« less
  8. Topological nature of step-edge states on the surface of the topological crystalline insulator Pb0.7Sn0.3Se

    In addition to novel surface states, topological insulators can also exhibit robust gapless states at crystalline defects. Step edges constitute a class of common defects on the surface of crystals. In this work we establish the topological nature of one-dimensional (1D) bound states localized at step edges of the (001) surface of a topological crystalline insulator Pb0.7Sn0.3Se, both theoretically and experimentally. We show that the topological stability of the step-edge states arises from an emergent particle-hole symmetry of the surface low-energy physics, and demonstrate the experimental signatures of the particle-hole symmetry breaking. We also reveal the effects of an externalmore » magnetic field on the 1D bound states. Furthermore, our work suggests the possibility of similar topological step-edge modes in other topological materials with a rocksalt structure.« less
  9. Nonparametric empirical Bayesian framework for fluorescence-lifetime imaging microscopy

    Fluorescence lifetime imaging microscopy (FLIM) is a powerful imaging tool used to study the molecular environment of flurophores. In time domain FLIM, extracting lifetime from fluorophores signals entails fitting data to a decaying exponential distribution function. However, most existing techniques for this purpose need large amounts of photons at each pixel and a long computation time, thus making it difficult to obtain reliable inference in applications requiring either short acquisition or minimal computation time. In this work, we introduce a new nonparametric empirical Bayesian framework for FLIM data analysis (NEB-FLIM), leading to both improved pixel-wise lifetime estimation and a moremore » robust and computationally efficient integral property inference. This framework is developed based on a newly proposed hierarchical statistical model for FLIM data and adopts a novel nonparametric maximum likelihood estimator to estimate the prior distribution. To demonstrate the merit of the proposed framework, we applied it on both simulated and real biological datasets and compared it with previous classical methods on these datasets.« less
  10. Conserved residue His-257 of Vibrio cholerae flavin transferase ApbE plays a critical role in substrate binding and catalysis

    The flavin transferase ApbE plays essential roles in bacterial physiology, covalently incorporating FMN cofactors into numerous respiratory enzymes that use the integrated cofactors as electron carriers. In this work we performed a detailed kinetic and structural characterization of Vibrio cholerae WT ApbE and mutants of the conserved residue His-257, to understand its role in substrate binding and in the catalytic mechanism of this family. Bi-substrate kinetic experiments revealed that ApbE follows a random Bi Bi sequential kinetic mechanism, in which a ternary complex is formed, indicating that both substrates must be bound to the enzyme for the reaction to proceed.more » Steady-state kinetic analyses show that the turnover rates of His-257 mutants are significantly smaller than those of WT ApbE, and have increased Km values for both substrates, indicating that the His-257 residue plays important roles in catalysis and in enzyme-substrate complex formation. Analyses of the pH dependence of ApbE activity indicate that the pKa of the catalytic residue (pKES1) increases by 2 pH units in the His-257 mutants, suggesting that this residue plays a role in substrate deprotonation. The crystal structures of WT ApbE and an H257G mutant were determined at 1.61 and 1.92 Å resolutions, revealing that His-257 is located in the catalytic site and that the substitution does not produce major conformational changes. In this paper, we propose a reaction mechanism in which His-257 acts as a general base that deprotonates the acceptor residue, which subsequently performs a nucleophilic attack on FAD for flavin transfer.« less
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