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ABSTRACT Releasing fish at varied life stages is an underutilized hatchery‐rearing practice. Columbia River Treaty tribes have been working to reintroduce extirpated Coho Salmon to historical habitats in upper watersheds. This effort has included the release of hatchery‐origin fish at both the parr and smolt life stages in the Yakima River Basin (Washington State USA), a tributary to the Columbia River. We evaluated releases of parr and smolts tagged with passive integrated transponders over 11 brood years. We assessed emigration timing, fish survival, and age‐at‐return for the two release groups. Emigrating juveniles released as smolts had higher survival and arrivedmore » downstream earlier than fish released as parr. Survival from release locations to adult return did not significantly differ for the two release groups. However, we observed a difference in apparent marine survival as fish released as parr had mean juvenile‐to‐adult return rates greater than fish released as smolts. Parr releases also tended to return at older age than smolt releases. Our results indicate that implementing practices to reduce homogenization of hatchery releases may produce survival and diversity benefits as fish mature to later life stages. Given the rapid ecosystem changes Pacific Salmon are experiencing throughout their life cycles, practices such as this may have increasing utility and import.« less

Abstract To promote recovery of natural salmonid populations, managers are utilizing hatchery supplementation programs to increase abundance of spawners on the spawning grounds. However, studies have provided evidence that captive breeding can result in domestication, demonstrated by lower fitness of hatchery‐origin compared with natural‐origin fish. Supplementation programs, therefore, typically use natural‐origin broodstock in an effort to minimize long‐term negative fitness impacts. Here we evaluated the upper Yakima River spring supplementation program for Chinook Salmon Oncorhynchus tshawytscha , which has broodstock comprised exclusively of unmarked fish presumed to be of natural‐origin. Using 5 years of spawner data, we tested for effects ofmore » hatchery breeding and rearing on total adult returns and their individual reproductive success when spawning naturally. Our study revealed that supplementation increased overall abundance of fish spawning naturally on the spawning grounds. However, on average, compared with natural‐origin spawners, hatchery‐origin fish had reduced reproductive success, which also translated to reduced reproductive success in three out of five return years for natural‐origin fish that spawned with hatchery‐origin fish. As expected, body length and return timing were also significant predictors of reproductive success. However, more generations of data are needed to establish the extent to which reduced reproductive success is passed on to naturally produced progeny.« less

Abstract The historical distribution of Sockeye Salmon Oncorhynchus nerka in the Columbia River basin has been constrained by the species’ dependence on nursery lakes for juvenile rearing. Several productive lake systems were impounded by dams during the last century leading to the extirpation of Sockeye Salmon from many nursery lakes in the region. Recent efforts to re‐establish populations in historically natal areas are exemplified by the Cle Elum Lake reintroduction program. The program is founded on outplanting adult fish from two middle Columbia River donor populations with different adaptive potentials. We used genetic stock identification methods to differentiate stock originsmore » between Osoyoos Lake ( OSO ) and Lake Wenatchee ( WEN ) donor stocks and to evaluate the relative productivity from two brood years (2011 and 2012) of natural spawning in the novel environment. Spawning ground surveys revealed assortative mating between earlier‐spawning WEN fish that were more abundant farthest upstream and later‐spawning OSO fish that were concentrated (82%) downstream nearest the lake. Hybrids accounted for only 5% of sampled smolts and 4% of adult returns. Smolts rearing in Cle Elum Lake were significantly larger overall ( OSO , 140 mm; WEN , 129 mm) than smolts in either donor population (84 mm). However, the average size of OSO smolts varied among emigration years, and relative smolt abundances favored the WEN stock (70% overall), indicative of a rearing survival advantage. In relation, the WEN stock exhibited a better average rate of replacement (0.80) in adult‐to‐adult escapement compared with the OSO stock (0.17). Continued monitoring will focus on trends in productivity and potential demographic shifts that may arise in the Cle Elum Lake population and will provide managers with information concerning limiting factors in the environment that might affect similar approaches to reintroductions in other lake systems.« less

Abstract We evaluated the genetic influence of hatchery supplementation on distinct naturally spawning populations of Chinook salmon Oncorhynchus tshawytscha in the South Fork Salmon River (SFSR), Idaho. Genetic tissue samples were collected from unmarked natural-origin and McCall Fish Hatchery (MFH)-reared Chinook salmon carcasses, and fish were identified by an adipose fin clip at five main-stem sites located both upstream and downstream of a seasonal exclusionary weir in the upper SFSR. We evaluated allele frequency data across 95 single-nucleotide polymorphism loci to determine the extent of genetic differentiation among collections. Genetic distance analyses and homogeneity tests indicated little subpopulation distinction inmore » the upper SFSR. The weak overall genetic structure (global F  ST = 0.010) is likely reflective of a population diversity similar to the historical structure with introgression by MFH stock in the naturally spawning population of the upper SFSR. Further analyses were conducted to evaluate the genetic structure among the upper SFSR and spawning aggregates in two adjacent SFSR tributaries: the Secesh River, which is devoid of any hatchery stocking, and Johnson Creek, where a discrete supplementation program has been implemented using only Johnson Creek fish. Our results indicated variable abundances of SFSR hatchery spawners distributed spatially among the three main watersheds. Gene flow appears to be restricted and genetic differentiation to be relatively large despite substantial hatchery releases in the upper SFSR. Three historical aggregates of Chinook salmon appear to persist in the SFSR metapopulation, where variable hatchery influences are coincident with the distribution of suitable spawning habitat and watershed-specific management objectives. Received January 5, 2011; accepted December 12, 2011« less

Abstract Understanding how environmental variation influences population genetic structure is important for conservation management because it can reveal how human stressors influence population connectivity, genetic diversity and persistence. We used riverscape genetics modelling to assess whether climatic and habitat variables were related to neutral and adaptive patterns of genetic differentiation (population‐specific and pairwise F _ST ) within five metapopulations (79 populations, 4583 individuals) of steelhead trout ( Oncorhynchus mykiss ) in the Columbia River Basin, USA . Using 151 putatively neutral and 29 candidate adaptive SNP loci, we found that climate‐related variables (winter precipitation, summer maximum temperature, winter highest 5%more » flow events and summer mean flow) best explained neutral and adaptive patterns of genetic differentiation within metapopulations, suggesting that climatic variation likely influences both demography (neutral variation) and local adaptation (adaptive variation). However, we did not observe consistent relationships between climate variables and F _ST across all metapopulations, underscoring the need for replication when extrapolating results from one scale to another (e.g. basin‐wide to the metapopulation scale). Sensitivity analysis (leave‐one‐population‐out) revealed consistent relationships between climate variables and F _ST within three metapopulations; however, these patterns were not consistent in two metapopulations likely due to small sample sizes ( N  =   10). These results provide correlative evidence that climatic variation has shaped the genetic structure of steelhead populations and highlight the need for replication and sensitivity analyses in land and riverscape genetics.« less