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Title: Conformational Dynamics of Bacteriochlorophyll c in Chlorosomes from the bchQ Mutant of Chlorobaculum tepidum

Journal Article · · Journal of Physical Chemistry. B

In contrast to the common viewpoint that bacteriochlorophyll (BChl) motion is largely absent within the chlorosome assembly, physics-based modeling points to a crucial role of the nanoscale librational motion of the macrocycle for the transfer of excitons. To elucidate this motion experimentally, compositional uniformity and high sensitivity are required. We focused on uniformly 13C labeled chlorosome preparations from the bchQ mutant Chlorobaculum tepidum with significantly enhanced structural homogeneity. The librational motion is characterized using Rotational Echo DOuble Resonance (REDOR), and in addition, the impact of temperature on specific functionalities within BChl molecules is studied with 1-dimensional and 2-dimensional dipolar and scalar-based MAS NMR measurements. Results show the gradual freezing of the tails and side chains of the BChls with decreasing temperature. However, the librational motion analyzed by measuring the 5C–H dipolar coupling strength obtained from REDOR data sets persists at different temperatures. REDOR simulations show a close match to the experimental dephasing frequency of oscillation for a dipolar coupling strength of 17.5 ± 0.5 kHz which is considerably less than the dipolar coupling strength of 22.7 kHz in the rigid limit. Following a two-site jump model, we arrive at an estimate for BChl libration sampling at an angle of θ = 48 ± 4°, corroborating that the macrocycle indeed experiences significant librational motion on a time scale that is short compared to the NMR measurement time. This finding is in full quantitative support of the dominant rotational motion exhibited by the BChl macrocycle estimated from early MD simulations.

Research Organization:
Leiden University (The Netherlands)
Sponsoring Organization:
USDOE Office of Science (SC), Basic Energy Sciences (BES); USDOE Office of Science (SC), Basic Energy Sciences (BES). Chemical Sciences, Geosciences & Biosciences Division (CSGB)
Grant/Contract Number:
FG02-94ER20137
OSTI ID:
2519271
Journal Information:
Journal of Physical Chemistry. B, Journal Name: Journal of Physical Chemistry. B Journal Issue: 8 Vol. 129; ISSN 1520-6106
Publisher:
American Chemical SocietyCopyright Statement
Country of Publication:
United States
Language:
English

References (57)

Introduction to rotational-echo, double-resonance NMR journal January 1998
NMR Crystallography: Evaluation of Hydrogen Positions in Hydromagnesite by 13 C{ 1 H} REDOR Solid‐State NMR and Density Functional Theory Calculation of Chemical Shielding Tensors journal March 2019
Total Correlation Spectroscopy in the Solid State. The Use of Scalar Couplings to Determine the Through-Bond Connectivity journal July 1996
REDOR Dephasing by Multiple Spins in the Presence of Molecular Motion journal August 1997
Recoupling of Heteronuclear Dipolar Interactions with Rotational-Echo Double-Resonance at High Magic-Angle Spinning Frequencies journal September 2000
SIMPSON: A General Simulation Program for Solid-State NMR Spectroscopy journal December 2000
Fast MAS Total Through-Bond Correlation Spectroscopy journal February 2001
Improved Proton Decoupling in NMR Spectroscopy of Crystalline Solids Using the S PINAL -64 Sequence journal December 2002
The Flexibility of SIMPSON and SIMMOL for Numerical Simulations in Solid-and Liquid-State NMR Spectroscopy journal December 2002
Amplitudes and time scales of picosecond-to-microsecond motion in proteins studied by solid-state NMR: a critical evaluation of experimental approaches and application to crystalline ubiquitin journal October 2013
2H–13C correlation solid-state NMR for investigating dynamics and water accessibilities of proteins and carbohydrates journal July 2017
The chlorosome: a prototype for efficient light harvesting in photosynthesis journal February 2010
Chlorosome antenna complexes from green photosynthetic bacteria journal June 2013
Glycolipid analyses of light-harvesting chlorosomes from envelope protein mutants of Chlorobaculum tepidum journal February 2016
Rotational-echo double-resonance NMR journal January 1989
Chlorosomes, photosynthetic antennae with novel self-organized pigment structures journal April 1992
Protein and lipid dynamics in photosynthetic thylakoid membranes investigated by in-situ solid-state NMR journal December 2016
Probing the gel to liquid-crystalline phase transition and relevant conformation changes in liposomes by 13C magic-angle spinning NMR spectroscopy journal December 2015
REDOR NMR for drug discovery journal November 2013
Conformational Dynamics of Light-Harvesting Complex II in a Native Membrane Environment journal January 2021
Distance information from proton-driven spin diffusion under MAS journal August 2006
The role of chirality and plastic crystallinity in the optical and mechanical properties of chlorosomes journal January 2022
Measurement of sample temperatures under magic-angle spinning from the chemical shift and spin-lattice relaxation rate of 79Br in KBr powder journal January 2009
Accurate measurement of one-bond H–X heteronuclear dipolar couplings in MAS solid-state NMR journal June 2011
Spinning-rate encoded chemical shift correlations from rotational resonance solid-state NMR experiments journal May 2013
Carbon-nitrogen REDOR to identify ms-timescale mobility in proteins journal August 2019
Studying dynamics by magic-angle spinning solid-state NMR spectroscopy: Principles and applications to biomolecules journal August 2016
C-REDOR curves of extended spin systems journal February 2013
Dipolar dephasing for structure determination in a paramagnetic environment journal June 2021
Hidden motions and motion-induced invisibility: Dynamics-based spectral editing in solid-state NMR journal September 2018
Structural biology of supramolecular assemblies by magic-angle spinning NMR spectroscopy journal January 2017
Dynamic Disorder Drives Exciton Transfer in Tubular Chlorosomal Assemblies journal April 2020
Structure of Light-Harvesting Aggregates in Individual Chlorosomes journal June 2016
Contrasting Modes of Self-Assembly and Hydrogen-Bonding Heterogeneity in Chlorosomes of Chlorobaculum tepidum journal May 2018
Measuring Dipolar Order Parameters in Nondeuterated Proteins Using Solid-State NMR at the Magic-Angle-Spinning Frequency of 100 kHz journal April 2023
Solid-State NMR-Based Approaches for Supramolecular Structure Elucidation journal April 2013
CP-MAS 13C-NMR Dipolar Correlation Spectroscopy of 13C-Enriched Chlorosomes and Isolated Bacteriochlorophyll c Aggregates of Chlorobium tepidum: The Self-Organization of Pigments Is the Main Structural Feature of Chlorosomes journal November 1995
A Refined Model of the Chlorosomal Antennae of the Green Bacterium Chlorobium tepidum from Proton Chemical Shift Constraints Obtained with High-Field 2-D and 3-D MAS NMR Dipolar Correlation Spectroscopy journal January 2001
Structural Variability in Wild-Type and bchQ bchR Mutant Chlorosomes of the Green Sulfur Bacterium Chlorobaculum tepidum journal May 2012
Polyglutamine Amyloid Core Boundaries and Flanking Domain Dynamics in Huntingtin Fragment Fibrils Determined by Solid-State Nuclear Magnetic Resonance journal October 2014
Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules. 1. Theory and range of validity journal August 1982
A New Approach in 1D and 2D 13 C High-Resolution Solid-State NMR Spectroscopy of Paramagnetic Organometallic Complexes by Very Fast Magic-Angle Spinning journal March 2003
Determination of Membrane Protein Structure and Dynamics by Magic-Angle-Spinning Solid-State NMR Spectroscopy journal August 2005
Organization of Bacteriochlorophylls in Individual Chlorosomes from Chlorobaculum tepidum Studied by 2-Dimensional Polarization Fluorescence Microscopy journal November 2011
Motions on the Millisecond Time Scale and Multiple Conformations of HIV-1 Capsid Protein: Implications for Structural Polymorphism of CA Assemblies journal April 2012
REDOR 3D:  Heteronuclear Distance Measurements in Uniformly Labeled and Natural Abundance Solids journal September 1997
Energy Transfer in Supramolecular Artificial Antennae Units of Synthetic Zinc Chlorins and Co-aggregated Energy Traps. A Time-Resolved Fluorescence Study, journal May 2002
Segmental and Local Chain Mobilities in Elastomers by 13C−H Residual Heteronuclear Dipolar Couplings journal June 2004
Fibril polymorphism affects immobilized non-amyloid flanking domains of huntingtin exon1 rather than its polyglutamine core journal May 2017
A first-principles description of proton-driven spin diffusion journal January 2012
An integrated approach towards extracting structural characteristics of chlorosomes from a bchQ mutant of Chlorobaculum tepidum journal January 2024
Progress in C13 and H1 solid-state nuclear magnetic resonance for paramagnetic systems under very fast magic angle spinning journal February 2008
An obligately photosynthetic bacterial anaerobe from a deep-sea hydrothermal vent journal June 2005
Alternating syn-anti bacteriochlorophylls form concentric helical nanotubes in chlorosomes journal May 2009
Biosolar cells: global artificial photosynthesis needs responsive matrices with quantum coherent kinetic control for high yield journal June 2015
Three Decades of REDOR in Protein Science: A Solid-State NMR Technique for Distance Measurement and Spectral Editing journal September 2023
An extremely low-light adapted phototrophic sulfur bacterium from the Black Sea journal January 1992