Cyanobacteria newly isolated from marine volcanic seeps display rapid sinking and robust, high-density growth

Schubert, Max G.; Tang, Tzu-Chieh; Goodchild-Michelman, Isabella M.; Ryon, Krista A.; Henriksen, James R.; Chavkin, Theodore; Wu, Yanqi; Miettinen, Teemu P.; Van Wychen, Stefanie; Dahlin, Lukas R.; Spatafora, Davide; Turco, Gabriele; Guarnieri, Michael T.; Manalis, Scott R.; Kowitz, John; Hann, Elizabeth C.; Dhir, Raja; Quatrini, Paola; Mason, Christopher E.; Church, George M.; Milazzo, Marco; Tierney, Braden T.

doi:10.1128/aem.00841-24

Title: Cyanobacteria newly isolated from marine volcanic seeps display rapid sinking and robust, high-density growth

Journal Article · 29 October 2024 · Applied and Environmental Microbiology

DOI: https://doi.org/10.1128/aem.00841-24 · OSTI ID:2481286

^[1]; Tang, Tzu-Chieh ^[2]; Goodchild-Michelman, Isabella M. ^[2]; Ryon, Krista A. ^[3]; Henriksen, James R. ^[4]; Chavkin, Theodore ^[5]; Wu, Yanqi ^[6]; Miettinen, Teemu P. ^[6]; Van Wychen, Stefanie ^[7]; Dahlin, Lukas R. ^[7]; Spatafora, Davide ^[8]; Turco, Gabriele ^[9]; Guarnieri, Michael T. ^[7]; Manalis, Scott R. ^[6]; Kowitz, John ^[10]; Hann, Elizabeth C. ^[2]; Dhir, Raja ^[11]; Quatrini, Paola ^[12];

^[3]; Church, George M. ^[13] more »

Two Frontiers Project, Fort Collins, CO (United States); Harvard Univ., Boston, MA (United States). Wyss Inst. For Biologically Inspired Engineering
Harvard Univ., Boston, MA (United States). Wyss Inst. For Biologically Inspired Engineering
Two Frontiers Project, Fort Collins, CO (United States); Cornell Univ., New York, NY (United States). Weill Medical College
Two Frontiers Project, Fort Collins, CO (United States); Colorado State Univ., Fort Collins, CO (United States)
Two Frontiers Project, Fort Collins, CO (United States); Univ. of Wisconsin, Madison, WI (United States)
Massachusetts Inst. of Technology (MIT), Cambridge, MA (United States)
National Renewable Energy Laboratory (NREL), Golden, CO (United States)
Two Frontiers Project, Fort Collins, CO (United States); Lungomare Cristoforo Colombo, Palermo (Italy); National Biodiversity Future Center, Palermo (Italy)
Two Frontiers Project, Fort Collins, CO (United States); National Biodiversity Future Center, Palermo (Italy); University of Palermo (Italy)
Two Frontiers Project, Fort Collins, CO (United States)
Two Frontiers Project, Fort Collins, CO (United States); Seed Health, Venice, CA (United States)
Two Frontiers Project, Fort Collins, CO (United States); University of Palermo (Italy)
Two Frontiers Project, Fort Collins, CO (United States); Harvard Univ., Boston, MA (United States). Wyss Inst. For Biologically Inspired Engineering; Harvard Medical School, Boston, MA (United States)

Cyanobacteria are photosynthetic organisms that play important roles in carbon cycling and are promising bioproduction chassis. Here, we isolate two novel cyanobacteria with 4.6Mbp genomes, UTEX 3221 and UTEX 3222, from a unique marine environment with naturally elevated CO₂. We describe complete genome sequences for both isolates and, focusing on UTEX 3222 due to its planktonic growth in liquid, characterize biotechnologically relevant growth and biomass characteristics. UTEX 3222 outpaces other fast-growing model strains on a solid medium. It can double every 2.35 hours in a liquid medium and grows to high density (>31 g/L biomass dry weight) in batch culture, nearly double that of Synechococcus sp. PCC 11901, whose high-density growth was recently reported. In addition, UTEX 3222 sinks readily, settling more quickly than other fast-growing strains, suggesting favorable economics of harvesting UTEX 3222 biomass. These traits may make UTEX 3222 a compelling choice for marine carbon dioxide removal (CDR) and photosynthetic bioproduction from CO₂. Overall, we find that bio-prospecting in environments with naturally elevated CO₂ may uncover novel CO₂-metabolizing organisms with unique characteristics.

View Accepted Manuscript (DOE)

Cite

Export

Save

Research Organization:: National Renewable Energy Laboratory (NREL), Golden, CO (United States)

Sponsoring Organization:: USDOE; National Science Foundation (NSF)

Grant/Contract Number:: AC36-08GO28308; FG02-02ER63445

OSTI ID:: 2481286

Report Number(s):: NREL/JA--2800-92438; MainId:94219; UUID:a0b4a4cc-c8a0-4015-b8b5-d39a86e629dd; MainAdminId:75498

Journal Information:: Applied and Environmental Microbiology, Journal Name: Applied and Environmental Microbiology Journal Issue: 11 Vol. 90; ISSN 0099-2240

Publisher:: American Society for MicrobiologyCopyright Statement

Country of Publication:: United States

Language:: English

References (93)

High algal production rates achieved in a shallow outdoor flume Laws, E. A.; Taguchi, S.; Hirata, J. Biotechnology and Bioengineering, Vol. 28, Issue 2, p. 191-197 https://doi.org/10.1002/bit.260280207	journal	February 1986
Fast‐growing phototrophic microorganisms and the productivity of phototrophic cultures Steuer, Ralf Biotechnology and Bioengineering, Vol. 119, Issue 8 https://doi.org/10.1002/bit.28123	journal	May 2022
Identification of Mutations in Laboratory-Evolved Microbes from Next-Generation Sequencing Data Using breseq Deatherage, Daniel E.; Barrick, Jeffrey E. Methods in Molecular Biology https://doi.org/10.1007/978-1-4939-0554-6_12	book	January 2014
Quantitative assessment of the major limitations on productivity ofSpirulina platensis in open raceways Richmond, A.; Lichtenberg, E.; Stahl, B. Journal of Applied Phycology, Vol. 2, Issue 3 https://doi.org/10.1007/BF02179776	journal	September 1990
Photobioreactor engineering: Design and performance Suh, In Soo; Lee, Choul-Gyun Biotechnology and Bioprocess Engineering, Vol. 8, Issue 6 https://doi.org/10.1007/BF02949274	journal	December 2003
The potential of Synechococcus elongatus UTEX 2973 for sugar feedstock production Song, Kuo; Tan, Xiaoming; Liang, Yajing Applied Microbiology and Biotechnology, Vol. 100, Issue 18 https://doi.org/10.1007/s00253-016-7510-z	journal	April 2016
Long-time variation of soil CO2 fluxes at the summit crater of Vulcano (Italy) Inguaggiato, Salvatore; Calderone, Lorenzo; Inguaggiato, Claudio Bulletin of Volcanology, Vol. 74, Issue 8 https://doi.org/10.1007/s00445-012-0637-6	journal	July 2012
Volcanic CO2 seep geochemistry and use in understanding ocean acidification Aiuppa, A.; Hall-Spencer, J. M.; Milazzo, M. Biogeochemistry, Vol. 152, Issue 1 https://doi.org/10.1007/s10533-020-00737-9	journal	December 2020
Responses of a new isolated Cyanobacterium aponinum strain to temperature, pH, CO2 and light quality Meng, Fanping; Cui, Hongwu; Wang, Yuejie Journal of Applied Phycology, Vol. 30, Issue 3 https://doi.org/10.1007/s10811-018-1411-8	journal	February 2018
Approaches in the photosynthetic production of sustainable fuels by cyanobacteria using tools of synthetic biology Yadav, Indrajeet; Rautela, Akhil; Kumar, Sanjay World Journal of Microbiology and Biotechnology, Vol. 37, Issue 12 https://doi.org/10.1007/s11274-021-03157-5	journal	October 2021
Algae-Based Beneficial Re-use of Carbon Emissions Using a Novel Photobioreactor: a Techno-Economic and Life Cycle Analysis Wilson, Michael H.; Shea, Aubrey; Groppo, John BioEnergy Research, Vol. 14, Issue 1 https://doi.org/10.1007/s12155-020-10178-9	journal	August 2020
Growth of Cyanobacterium aponinum influenced by increasing salt concentrations and temperature Winckelmann, Dominik; Bleeke, Franziska; Bergmann, Peter 3 Biotech, Vol. 5, Issue 3 https://doi.org/10.1007/s13205-014-0224-y	journal	May 2014
[83] Conjugal transfer of DNA to cyanobacteria Elhai, Jeff; Wolk, C. Peter Methods in Enzymology, Vol. 167, 747-754 https://doi.org/10.1016/0076-6879(88)67086-8	book	January 1988
Techno-economic evaluation of microalgae harvesting and dewatering systems Fasaei, F.; Bitter, J. H.; Slegers, P. M. Algal Research, Vol. 31 https://doi.org/10.1016/j.algal.2017.11.038	journal	April 2018
Potential carbon dioxide fixation by industrially important microalgae Sydney, Eduardo Bittencourt; Sturm, Wilerson; de Carvalho, Julio Cesar Bioresource Technology, Vol. 101, Issue 15 https://doi.org/10.1016/j.biortech.2010.02.088	journal	August 2010
Optimization of CO2 bio-mitigation by Chlorella vulgaris Anjos, Mariana; Fernandes, Bruno D.; Vicente, António A. Bioresource Technology, Vol. 139 https://doi.org/10.1016/j.biortech.2013.04.032	journal	July 2013
Biosequestration of atmospheric CO 2 and flue gas-containing CO 2 by microalgae Cheah, Wai Yan; Show, Pau Loke; Chang, Jo-Shu Bioresource Technology, Vol. 184 https://doi.org/10.1016/j.biortech.2014.11.026	journal	May 2015
Production, isolation and characterization of C-phycocyanin from a new halo-tolerant Cyanobacterium aponinum using seawater Lin, Jia-Yi; Ng, I-Son Bioresource Technology, Vol. 342 https://doi.org/10.1016/j.biortech.2021.125946	journal	December 2021
Vibrio cholerae high cell density quorum sensing activates the host intestinal innate immune response Jugder, Bat-Erdene; Batista, Juliana H.; Gibson, Jacob A. Cell Reports, Vol. 40, Issue 12 https://doi.org/10.1016/j.celrep.2022.111368	journal	September 2022
Trace element bias in the use of CO2 vents as analogues for low pH environments: Implications for contamination levels in acidified oceans Vizzini, S.; Di Leonardo, R.; Costa, V. Estuarine, Coastal and Shelf Science, Vol. 134 https://doi.org/10.1016/j.ecss.2013.09.015	journal	December 2013
Comparative evaluation of microalgae strains for CO2 capture purposes Sepulveda, Claudia; Gómez, Cintia; EL Bahraoui, Naoufel Journal of CO2 Utilization, Vol. 30 https://doi.org/10.1016/j.jcou.2019.02.004	journal	March 2019
A newly isolated alkaliphilic cyanobacterium for biomass production with direct air CO2 capture Gao, Song; Pittman, Kyle; Edmundson, Scott Journal of CO2 Utilization, Vol. 69 https://doi.org/10.1016/j.jcou.2023.102399	journal	March 2023
Engineering whiting events in culture: A microalgae-driven calcium carbonate and biomass production process at high pH and alkalinity with the marine microalga Nannochloropsis oceanica IMET1 Lee, Yi-Ying; Jonas, Lauren; Hill, Russell Journal of CO2 Utilization, Vol. 80 https://doi.org/10.1016/j.jcou.2024.102669	journal	February 2024
Metallic nanoparticle enrichment at low temperature, shallow CO2 seeps in Southern Italy Kadar, Enikö; Fisher, Andrew; Stolpe, Björn Marine Chemistry, Vol. 140-141 https://doi.org/10.1016/j.marchem.2012.07.001	journal	August 2012
Scientific rationale and international obligations for protection of active hydrothermal vent ecosystems from deep-sea mining Van Dover, C. L.; Arnaud-Haond, S.; Gianni, M. Marine Policy, Vol. 90 https://doi.org/10.1016/j.marpol.2018.01.020	journal	April 2018
Geochemical survey of Levante Bay, Vulcano Island (Italy), a natural laboratory for the study of ocean acidification Boatta, F.; D’Alessandro, W.; Gagliano, A. L. Marine Pollution Bulletin, Vol. 73, Issue 2 https://doi.org/10.1016/j.marpolbul.2013.01.029	journal	August 2013
Biomineralization and Successive Regeneration of Engineered Living Building Materials Heveran, Chelsea M.; Williams, Sarah L.; Qiu, Jishen Matter, Vol. 2, Issue 2 https://doi.org/10.1016/j.matt.2019.11.016	journal	February 2020
Light and carbon: Synthetic biology toward new cyanobacteria-based living biomaterials Goodchild-Michelman, Isabella M.; Church, George M.; Schubert, Max G. Materials Today Bio, Vol. 19 https://doi.org/10.1016/j.mtbio.2023.100583	journal	April 2023
A sustainable process train for a marine microalga-mediated biomass production and CO2 capture: A pilot-scale cultivation of Nannochloropsis salina in open raceway ponds and harvesting through electropreciflocculation Mohan, Natarajan; Rao, Polur Hanumantha; Boopathy, Annakkili Baskara Renewable Energy, Vol. 173 https://doi.org/10.1016/j.renene.2021.03.147	journal	August 2021
Harvesting techniques applied to microalgae: A review Barros, Ana I.; Gonçalves, Ana L.; Simões, Manuel Renewable and Sustainable Energy Reviews, Vol. 41 https://doi.org/10.1016/j.rser.2014.09.037	journal	January 2015
Light-optimized growth of cyanobacterial cultures: Growth phases and productivity of biomass and secreted molecules in light-limited batch growth Clark, Ryan L.; McGinley, Laura L.; Purdy, Hugh M. Metabolic Engineering, Vol. 47 https://doi.org/10.1016/j.ymben.2018.03.017	journal	May 2018
Weighing of biomolecules, single cells and single nanoparticles in fluid Burg, Thomas P.; Godin, Michel; Knudsen, Scott M. Nature, Vol. 446, Issue 7139 https://doi.org/10.1038/nature05741	journal	April 2007
Fast gapped-read alignment with Bowtie 2 Langmead, Ben; Salzberg, Steven L. Nature Methods, Vol. 9, Issue 4 https://doi.org/10.1038/nmeth.1923	journal	March 2012
Fiji: an open-source platform for biological-image analysis Schindelin, Johannes; Arganda-Carreras, Ignacio; Frise, Erwin Nature Methods, Vol. 9, Issue 7 https://doi.org/10.1038/nmeth.2019	journal	June 2012
Microbial production of recalcitrant dissolved organic matter: long-term carbon storage in the global ocean Jiao, Nianzhi; Herndl, Gerhard J.; Hansell, Dennis A. Nature Reviews Microbiology, Vol. 8, Issue 8 https://doi.org/10.1038/nrmicro2386	journal	July 2010
Small phytoplankton contribute greatly to CO2-fixation after the diatom bloom in the Southern Ocean Irion, Solène; Christaki, Urania; Berthelot, Hugo The ISME Journal, Vol. 15, Issue 9 https://doi.org/10.1038/s41396-021-00915-z	journal	March 2021
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries Jain, Chirag; Rodriguez-R, Luis M.; Phillippy, Adam M. Nature Communications, Vol. 9, Issue 1 https://doi.org/10.1038/s41467-018-07641-9	journal	November 2018
MetaboAnalystR 4.0: a unified LC-MS workflow for global metabolomics Pang, Zhiqiang; Xu, Lei; Viau, Charles Nature Communications, Vol. 15, Issue 1 https://doi.org/10.1038/s41467-024-48009-6	journal	May 2024
Assembly of long, error-prone reads using repeat graphs Kolmogorov, Mikhail; Yuan, Jeffrey; Lin, Yu Nature Biotechnology, Vol. 37, Issue 5 https://doi.org/10.1038/s41587-019-0072-8	journal	April 2019
Noninvasive monitoring of single-cell mechanics by acoustic scattering Kang, Joon Ho; Miettinen, Teemu P.; Chen, Lynna Nature Methods, Vol. 16, Issue 3 https://doi.org/10.1038/s41592-019-0326-x	journal	February 2019
Genome Features and Biochemical Characteristics of a Robust, Fast Growing and Naturally Transformable Cyanobacterium Synechococcus elongatus PCC 11801 Isolated from India Jaiswal, Damini; Sengupta, Annesha; Sohoni, Sujata Scientific Reports, Vol. 8, Issue 1 https://doi.org/10.1038/s41598-018-34872-z	journal	November 2018
A Novel Cyanobacterium Synechococcus elongatus PCC 11802 has Distinct Genomic and Metabolomic Characteristics Compared to its Neighbor PCC 11801 Jaiswal, Damini; Sengupta, Annesha; Sengupta, Shinjinee Scientific Reports, Vol. 10, Issue 1 https://doi.org/10.1038/s41598-019-57051-0	journal	January 2020
Picochlorum celeri as a model system for robust outdoor algal growth in seawater Krishnan, Anagha; Likhogrud, Maria; Cano, Melissa Scientific Reports, Vol. 11, Issue 1 https://doi.org/10.1038/s41598-021-91106-5	journal	June 2021
Development of a high-productivity, halophilic, thermotolerant microalga Picochlorum renovo Dahlin, Lukas R.; Gerritsen, Alida T.; Henard, Calvin A. Communications Biology, Vol. 2, Issue 1 https://doi.org/10.1038/s42003-019-0620-2	journal	October 2019
Newly discovered Synechococcus sp. PCC 11901 is a robust cyanobacterial strain for high biomass production Włodarczyk, Artur; Selão, Tiago Toscano; Norling, Birgitta Communications Biology, Vol. 3, Issue 1 https://doi.org/10.1038/s42003-020-0910-8	journal	May 2020
Synechococcus elongatus UTEX 2973, a fast growing cyanobacterial chassis for biosynthesis using light and CO2 Yu, Jingjie; Liberton, Michelle; Cliften, Paul F. Scientific Reports, Vol. 5, Issue 1 https://doi.org/10.1038/srep08132	journal	January 2015
Cpf1 Is A Versatile Tool for CRISPR Genome Editing Across Diverse Species of Cyanobacteria Ungerer, Justin; Pakrasi, Himadri B. Scientific Reports, Vol. 6, Issue 1 https://doi.org/10.1038/srep39681	journal	December 2016
Dewatering of microalgal cultures: A major bottleneck to algae-based fuels Uduman, Nyomi; Qi, Ying; Danquah, Michael K. Journal of Renewable and Sustainable Energy, Vol. 2, Issue 1, Article No. 012701 https://doi.org/10.1063/1.3294480	journal	January 2010
Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus Flombaum, P.; Gallegos, J. L.; Gordillo, R. A. Proceedings of the National Academy of Sciences, Vol. 110, Issue 24 https://doi.org/10.1073/pnas.1307701110	journal	May 2013
Phototaxis in a wild isolate of the cyanobacterium Synechococcus elongatus Yang, Yiling; Lam, Vinson; Adomako, Marie Proceedings of the National Academy of Sciences, Vol. 115, Issue 52 https://doi.org/10.1073/pnas.1812871115	journal	December 2018
Comparative genomics reveals the molecular determinants of rapid growth of the cyanobacterium Synechococcus elongatus UTEX 2973 Ungerer, Justin; Wendt, Kristen E.; Hendry, John I. Proceedings of the National Academy of Sciences, Vol. 115, Issue 50 https://doi.org/10.1073/pnas.1814912115	journal	November 2018
Cyanobacteria: Promising biocatalysts for sustainable chemical production Knoot, Cory J.; Ungerer, Justin; Wangikar, Pramod P. Journal of Biological Chemistry, Vol. 293, Issue 14 https://doi.org/10.1074/jbc.R117.815886	journal	October 2017
The international journeys and aliases of Synechococcus elongatus Golden, Susan S. New Zealand Journal of Botany, Vol. 57, Issue 2 https://doi.org/10.1080/0028825X.2018.1551805	journal	December 2018
Recent advances in synthetic biology of cyanobacteria for improved chemicals production Wang, Fen; Gao, Yuanyuan; Yang, Guang Bioengineered, Vol. 11, Issue 1 https://doi.org/10.1080/21655979.2020.1837458	journal	January 2020
Extraction and Quantitation of Nicotinamide Adenine Dinucleotide Redox Cofactors Lu, Wenyun; Wang, Lin; Chen, Li Antioxidants & Redox Signaling, Vol. 28, Issue 3 https://doi.org/10.1089/ars.2017.7014	journal	January 2018
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database Chaumeil, Pierre-Alain; Mussig, Aaron J.; Hugenholtz, Philip Bioinformatics https://doi.org/10.1093/bioinformatics/btz848	journal	November 2019
CO2 concentrating mechanisms in cyanobacteria: molecular components, their diversity and evolution Badger, M. R. Journal of Experimental Botany, Vol. 54, Issue 383 https://doi.org/10.1093/jxb/erg076	journal	February 2003
REBASE: a database for DNA restriction and modification: enzymes, genes and genomes Roberts, Richard J.; Vincze, Tamas; Posfai, Janos Nucleic Acids Research, Vol. 51, Issue D1 https://doi.org/10.1093/nar/gkac975	journal	November 2022
Proksee: in-depth characterization and visualization of bacterial genomes Grant, Jason R.; Enns, Eric; Marinier, Eric Nucleic Acids Research, Vol. 51, Issue W1 https://doi.org/10.1093/nar/gkad326	journal	May 2023
antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisation Blin, Kai; Shaw, Simon; Augustijn, Hannah E. Nucleic Acids Research, Vol. 51, Issue W1 https://doi.org/10.1093/nar/gkad344	journal	May 2023
PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies Akhter, Sajia; Aziz, Ramy K.; Edwards, Robert A. Nucleic Acids Research, Vol. 40, Issue 16 https://doi.org/10.1093/nar/gks406	journal	May 2012
PHROG: families of prokaryotic virus proteins clustered using remote homology Terzian, Paul; Olo Ndela, Eric; Galiez, Clovis NAR Genomics and Bioinformatics, Vol. 3, Issue 3 https://doi.org/10.1093/nargab/lqab067	journal	June 2021
Photosynthetic activities of a thermophilic blue-green alga Yamaoka, Takashi; Satoh, Kazuhiko; Katoh, Sakae Plant and Cell Physiology, Vol. 19, Issue 6 https://doi.org/10.1093/oxfordjournals.pcp.a075684	journal	September 1978
An estimate of global primary production in the ocean from satellite radiometer data Longhurst, Alan; Sathyendranath, Shubha; Platt, Trevor Journal of Plankton Research, Vol. 17, Issue 6 https://doi.org/10.1093/plankt/17.6.1245	journal	January 1995
Bakta: rapid and standardized annotation of bacterial genomes via alignment-free sequence identification Schwengers, Oliver; Jelonek, Lukas; Dieckmann, Marius Alfred Microbial Genomics, Vol. 7, Issue 11 https://doi.org/10.1099/mgen.0.000685	journal	November 2021
Cell surface composition, released polysaccharides, and ionic strength mediate fast sedimentation in the cyanobacterium Synechococcus elongatusPCC 7942 Zedler, Julie A. Z.; Michel, Marlene; Pohnert, Georg Environmental Microbiology, Vol. 25, Issue 10 https://doi.org/10.1111/1462-2920.16426	journal	June 2023
Cell size, density, and nutrient dependency of unicellular algal gravitational sinking velocities Miettinen, Teemu P.; Gomez, Annika L.; Wu, Yanqi Science Advances, Vol. 10, Issue 27 https://doi.org/10.1126/sciadv.adn8356	journal	July 2024
Primary Production of the Biosphere: Integrating Terrestrial and Oceanic Components Field, C. B. Science, Vol. 281, Issue 5374 https://doi.org/10.1126/science.281.5374.237	journal	July 1998
Cyanobacterium aponinum, a new Cyanoprokaryote from the microbial mat of Euganean thermal springs (Padua, Italy) Moro, Isabella; Rascio, Nicoletta; La Rocca, Nicoletta Algological Studies, Vol. 123 https://doi.org/10.1127/1864-1318/2007/0123-0001	journal	May 2007
Cyanobacteria newly isolated from marine volcanic seeps display rapid sinking and robust, high-density growth Schubert, Max G.; Tang, Tzu-Chieh; Goodchild-Michelman, Isabella M. Applied and Environmental Microbiology, Vol. 90, Issue 11 https://doi.org/10.1128/aem.00841-24	journal	November 2024
Purification and properties of unicellular blue-green algae (order Chroococcales) Stanier, R. Y.; Kunisawa, R.; Mandel, M. Bacteriological Reviews, Vol. 35, Issue 2 https://doi.org/10.1128/br.35.2.171-205.1971	journal	June 1971
Adjustments to Photosystem Stoichiometry and Electron Transfer Proteins Are Key to the Remarkably Fast Growth of the Cyanobacterium Synechococcus elongatus UTEX 2973 Ungerer, Justin; Lin, Po-Cheng; Chen, Hui-Yuan mBio, Vol. 9, Issue 1 https://doi.org/10.1128/mBio.02327-17	journal	February 2018
Comparative Genomics of Synechococcus elongatus Explains the Phenotypic Diversity of the Strains Adomako, Marie; Ernst, Dustin; Simkovsky, Ryan mBio, Vol. 13, Issue 3 https://doi.org/10.1128/mbio.00862-22	journal	June 2022
Genome streamlining to improve performance of a fast-growing cyanobacterium Synechococcus elongatus UTEX 2973 Sengupta, Annesha; Bandyopadhyay, Anindita; Sarkar, Debolina mBio, Vol. 15, Issue 3 https://doi.org/10.1128/mbio.03530-23	journal	March 2024
Antenna Modification in a Fast-Growing Cyanobacterium Synechococcus elongatus UTEX 2973 Leads to Improved Efficiency and Carbon-Neutral Productivity Sengupta, Annesha; Bandyopadhyay, Anindita; Schubert, Max G. Microbiology Spectrum, Vol. 11, Issue 4 https://doi.org/10.1128/spectrum.00500-23	journal	August 2023
A Ubiquitously Conserved Cyanobacterial Protein Phosphatase Essential for High Light Tolerance in a Fast-Growing Cyanobacterium Walker, Patricia L.; Pakrasi, Himadri B. Microbiology Spectrum, Vol. 10, Issue 4 https://doi.org/10.1128/spectrum.01008-22	journal	August 2022
Evolution of Oxygenic Photosynthesis Fischer, Woodward W.; Hemp, James; Johnson, Jena E. Annual Review of Earth and Planetary Sciences, Vol. 44, Issue 1 https://doi.org/10.1146/annurev-earth-060313-054810	journal	June 2016
Global carbon dioxide removal rates from forest landscape restoration activities Bernal, Blanca; Murray, Lara T.; Pearson, Timothy R. H. Carbon Balance and Management, Vol. 13, Issue 1 https://doi.org/10.1186/s13021-018-0110-8	journal	November 2018
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 Love, Michael I.; Huber, Wolfgang; Anders, Simon Genome Biology, Vol. 15, Issue 12 https://doi.org/10.1186/s13059-014-0550-8	journal	December 2014
Circlator: automated circularization of genome assemblies using long sequencing reads Hunt, Martin; Silva, Nishadi De; Otto, Thomas D. Genome Biology, Vol. 16, Issue 1 https://doi.org/10.1186/s13059-015-0849-0	journal	December 2015
Trycycler: consensus long-read assemblies for bacterial genomes Wick, Ryan R.; Judd, Louise M.; Cerdeira, Louise T. Genome Biology, Vol. 22, Issue 1 https://doi.org/10.1186/s13059-021-02483-z	journal	September 2021
Robust, high-productivity phototrophic carbon capture at high pH and alkalinity using natural microbial communities Sharp, Christine E.; Urschel, Sydney; Dong, Xiaoli Biotechnology for Biofuels, Vol. 10, Issue 1 https://doi.org/10.1186/s13068-017-0769-1	journal	March 2017
Characterization of a heat-tolerant Chlorella sp. GD mutant with enhanced photosynthetic CO2 fixation efficiency and its implication as lactic acid fermentation feedstock Lee, Tse-Min; Tseng, Yu-Fei; Cheng, Chieh-Lun Biotechnology for Biofuels, Vol. 10, Issue 1 https://doi.org/10.1186/s13068-017-0905-y	journal	September 2017
Biomineralization of cyanobacteria Synechocystis pevalekii improves the durability properties of cement mortar Sidhu, Navneet; Goyal, Shweta; Reddy, M. Sudhakara AMB Express, Vol. 12, Issue 1 https://doi.org/10.1186/s13568-022-01403-z	journal	May 2022
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads Wick, Ryan R.; Judd, Louise M.; Gorrie, Claire L. PLOS Computational Biology, Vol. 13, Issue 6 https://doi.org/10.1371/journal.pcbi.1005595	journal	June 2017
Polypolish: Short-read polishing of long-read bacterial genome assemblies Wick, Ryan R.; Holt, Kathryn E. PLOS Computational Biology, Vol. 18, Issue 1 https://doi.org/10.1371/journal.pcbi.1009802	journal	January 2022
Phenotypic characterization of Synechocystis sp. PCC 6803 substrains reveals differences in sensitivity to abiotic stress Zavřel, Tomáš; Očenášová, Petra; Červený, Jan PLOS ONE, Vol. 12, Issue 12 https://doi.org/10.1371/journal.pone.0189130	journal	December 2017
3D bioprinting of mineralizing cyanobacteria as novel approach for the fabrication of living building materials Reinhardt, Olena; Ihmann, Stephanie; Ahlhelm, Matthias Frontiers in Bioengineering and Biotechnology, Vol. 11 https://doi.org/10.3389/fbioe.2023.1145177	journal	April 2023
Evolutionary Changes in DnaA-Dependent Chromosomal Replication in Cyanobacteria Ohbayashi, Ryudo; Hirooka, Shunsuke; Onuma, Ryo Frontiers in Microbiology, Vol. 11 https://doi.org/10.3389/fmicb.2020.00786	journal	April 2020
Cyanobacterial PHA Production—Review of Recent Advances and a Summary of Three Years’ Working Experience Running a Pilot Plant Troschl, Clemens; Meixner, Katharina; Drosg, Bernhard Bioengineering, Vol. 4, Issue 4 https://doi.org/10.3390/bioengineering4020026	journal	March 2017
Development of a Biotechnology Platform for the Fast-Growing Cyanobacterium Synechococcus sp. PCC 11901 Mills, Lauren A.; Moreno-Cabezuelo, José Ángel; Włodarczyk, Artur Biomolecules, Vol. 12, Issue 7 https://doi.org/10.3390/biom12070872	journal	June 2022
Photosynthetic Co-production of Succinate and Ethylene in a Fast-Growing Cyanobacterium, Synechococcus elongatus PCC 11801 Sengupta, Annesha; Pritam, Prem; Jaiswal, Damini Metabolites, Vol. 10, Issue 6 https://doi.org/10.3390/metabo10060250	journal	June 2020
Single-cell monitoring of dry mass and dry mass density reveals exocytosis of cellular dry contents in mitosis Miettinen, Teemu P.; Ly, Kevin S.; Lam, Alice eLife, Vol. 11 https://doi.org/10.7554/eLife.76664	journal	May 2022

Similar Records

Cyanobacteria newly isolated from marine volcanic seeps display rapid sinking and robust, high-density growth

Journal Article · 2024 · Applied and Environmental Microbiology · OSTI ID:2998454

Schubert, Max G.; Tang, Tzu-Chieh; Goodchild-Michelman, Isabella M.; +19 more

Genome Features and Biochemical Characteristics of a Robust, Fast Growing and Naturally Transformable Cyanobacterium Synechococcus elongatus PCC 11801 Isolated from India

Journal Article · 2018 · Scientific Reports · OSTI ID:1624436

Jaiswal, Damini; Sengupta, Annesha; Sohoni, Sujata; +4 more

Identifying the metabolic differences of a fast-growth phenotype in Synechococcus UTEX 2973

Journal Article · 2017 · Scientific Reports · OSTI ID:1347426

Mueller, Thomas J.; Ungerer, Justin L.; Pakrasi, Himadri B.; +1 more

Related Subjects

59 BASIC BIOLOGICAL SCIENCES
CO2
algae
carbon sequestration
cyanobacteria
microbial diversity
microbiology
photosynthesis

Title: Cyanobacteria newly isolated from marine volcanic seeps display rapid sinking and robust, high-density growth

Citation Formats

References (93)

Similar Records

Related Subjects