Complete genome sequence of Promicromonospora sp. strain Populi , an actinobacterium isolated from Populus trichocarpa rhizosphere

Podar, Mircea; Hochanadel, Leah H.; Alexander, William G.; Schadt, Christopher W.; Pelletier, Dale A.; Pritchard, ed., Leighton

doi:10.1128/mra.00851-24

Title: Complete genome sequence of Promicromonospora sp. strain Populi , an actinobacterium isolated from Populus trichocarpa rhizosphere

Journal Article · 12 December 2024 · Microbiology Resource Announcements

DOI: https://doi.org/10.1128/mra.00851-24 · OSTI ID:2481025

; Hochanadel, Leah H.; Alexander, William G.;

;

; Pritchard, ed., Leighton

ABSTRACT Promicromonospora sp. strain Populi is an actinobacterium isolated from the rhizosphere of a black cottonwood tree, Populus trichocarpa . We completely sequenced its 5.2-Mbp chromosome using Oxford Nanopore long reads and predicted it to encode 4,685 proteins, 3 rRNA operons, and 54 tRNAs and noncoding RNAs.

View Journal Article

Cite

Export

Save

Sponsoring Organization:: USDOE

OSTI ID:: 2481025

Journal Information:: Microbiology Resource Announcements, Journal Name: Microbiology Resource Announcements Journal Issue: 12 Vol. 13; ISSN 2576-098X

Publisher:: American Society for MicrobiologyCopyright Statement

Country of Publication:: United States

Language:: English

References (21)

Draft genome sequence of Promicromonospora panici sp. nov., a novel ionizing-radiation-resistant actinobacterium isolated from roots of the desert plant Panicum turgidum Guesmi, Sihem; Nouioui, Imen; Pujic, Petar Extremophiles, Vol. 25, Issue 1 https://doi.org/10.1007/s00792-020-01207-8	journal	October 2020
Diversity and bioactive potential of Actinomycetia from the rhizosphere soil of Juniperus excelsa Tistechok, Stepan; Roman, Ivan; Fedorenko, Victor Folia Microbiologica, Vol. 68, Issue 4 https://doi.org/10.1007/s12223-023-01047-x	journal	March 2023
Gibberellin-producing Promicromonospora sp. SE188 improves Solanum lycopersicum plant growth and influences endogenous plant hormones Kang, Sang-Mo; Khan, Abdul Latif; Hamayun, Muhammad Journal of Microbiology, Vol. 50, Issue 6 https://doi.org/10.1007/s12275-012-2273-4	journal	December 2012
Assessment of the rhizosphere fungi and bacteria recruited by sugarcane during smut invasion Duan, Mingzheng; Wang, Lingqiang; Song, Xiupeng Brazilian Journal of Microbiology, Vol. 54, Issue 1 https://doi.org/10.1007/s42770-022-00871-6	journal	November 2022
Actinomycetes benefaction role in soil and plant health Bhatti, Asma Absar; Haq, Shamsul; Bhat, Rouf Ahmad Microbial Pathogenesis, Vol. 111 https://doi.org/10.1016/j.micpath.2017.09.036	journal	October 2017
KBase: The United States Department of Energy Systems Biology Knowledgebase Arkin, Adam P.; Cottingham, Robert W.; Henry, Christopher S. Nature Biotechnology, Vol. 36, Issue 7 https://doi.org/10.1038/nbt.4163	journal	July 2018
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries Jain, Chirag; Rodriguez-R, Luis M.; Phillippy, Adam M. Nature Communications, Vol. 9, Issue 1 https://doi.org/10.1038/s41467-018-07641-9	journal	November 2018
Assembly of long, error-prone reads using repeat graphs Kolmogorov, Mikhail; Yuan, Jeffrey; Lin, Yu Nature Biotechnology, Vol. 37, Issue 5 https://doi.org/10.1038/s41587-019-0072-8	journal	April 2019
Time- and memory-efficient genome assembly with Raven Vaser, Robert; Šikić, Mile Nature Computational Science, Vol. 1, Issue 5 https://doi.org/10.1038/s43588-021-00073-4	journal	May 2021
Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences Li, Heng Bioinformatics, Vol. 32, Issue 14 https://doi.org/10.1093/bioinformatics/btw152	journal	March 2016
Streptomyces as a plant's best friend? Viaene, Tom; Langendries, Sarah; Beirinckx, Stien FEMS Microbiology Ecology, Vol. 92, Issue 8 https://doi.org/10.1093/femsec/fiw119	journal	June 2016
NCBI prokaryotic genome annotation pipeline Tatusova, Tatiana; DiCuccio, Michael; Badretdin, Azat Nucleic Acids Research, Vol. 44, Issue 14 https://doi.org/10.1093/nar/gkw569	journal	June 2016
Promicromonospora endophytica sp. nov., an endophytic actinobacterium isolated from the root of an Australian native Grey Box tree Kaewkla, Onuma; Franco, Christopher M. M. International Journal of Systematic and Evolutionary Microbiology, Vol. 62, Issue Pt_7 https://doi.org/10.1099/ijs.0.033258-0	journal	July 2012
Promicromonospora iranensis sp. nov., an actinobacterium isolated from rhizospheric soil Mohammadipanah, Fatemeh; Hamedi, Javad; Spröer, Cathrin International Journal of Systematic and Evolutionary Microbiology, Vol. 64, Issue Pt_9 https://doi.org/10.1099/ijs.0.063982-0	journal	September 2014
Promicromonospora callitridis sp. nov., an endophytic actinobacterium isolated from the surface-sterilized root of an Australian native pine tree Kaewkla, Onuma; Franco, Christopher M. M. International Journal of Systematic and Evolutionary Microbiology, Vol. 67, Issue 9 https://doi.org/10.1099/ijsem.0.002165	journal	September 2017
Enrichment of Root Endophytic Bacteria from Populus deltoides and Single-Cell-Genomics Analysis Utturkar, Sagar M.; Cude, W. Nathan; Robeson, Michael S. Applied and Environmental Microbiology, Vol. 82, Issue 18 https://doi.org/10.1128/AEM.01285-16	journal	July 2016
Cultivating the Bacterial Microbiota of Populus Roots Carper, Dana L.; Weston, David J.; Barde, Aditya mSystems, Vol. 6, Issue 3 https://doi.org/10.1128/mSystems.01306-20	journal	June 2021
Trycycler: consensus long-read assemblies for bacterial genomes Wick, Ryan R.; Judd, Louise M.; Cerdeira, Louise T. Genome Biology, Vol. 22, Issue 1 https://doi.org/10.1186/s13059-021-02483-z	journal	September 2021
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments Price, Morgan N.; Dehal, Paramvir S.; Arkin, Adam P. PLoS ONE, Vol. 5, Issue 3 https://doi.org/10.1371/journal.pone.0009490	journal	March 2010
Climatic Aridity Gradient Modulates the Diversity of the Rhizosphere and Endosphere Bacterial Microbiomes of Opuntia ficus-indica Karray, Fatma; Gargouri, Mahmoud; Chebaane, Asma Frontiers in Microbiology, Vol. 11 https://doi.org/10.3389/fmicb.2020.01622	journal	July 2020
Actinobacteria–Plant Interactions in Alleviating Abiotic Stress Narsing Rao, Manik Prabhu; Lohmaneeratana, Karan; Bunyoo, Chakrit Plants, Vol. 11, Issue 21 https://doi.org/10.3390/plants11212976	journal	November 2022

Similar Records

Complete genome sequence of Luteolibacter sp. strain Populi, a member of phylum Verrucomicrobiota isolated from the Populus trichocarpa rhizosphere

Journal Article · 2024 · Microbiology Resource Announcements · OSTI ID:2449665

Imai, Sora; Allen, Benjamin; Hochanadel, Leah H.; +6 more

Luteolibacter sp. strain Populi

Dataset · 2024 · OSTI ID:2404572

Allen, Benjamin; Podar, Mircea

Rhizosphere microbiomes diverge among Populus trichocarpa plant-host genotypes and chemotypes, but it depends on soil origin

Journal Article · 2019 · Microbiome · OSTI ID:1618948

Veach, Allison M.; Morris, Reese; Yip, Daniel Z.; +5 more

Title: Complete genome sequence of Promicromonospora sp. strain Populi , an actinobacterium isolated from Populus trichocarpa rhizosphere

Citation Formats

References (21)

Similar Records

Related Subjects