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Title: Simulation Study of High-Precision Characterization of MeV Electron Interactions for Advanced Nano-Imaging of Thick Biological Samples and Microchips

Journal Article · · Nanomaterials
ORCiD logo [1];  [2];  [1];  [1]; ORCiD logo [1]; ORCiD logo [1];  [3];  [4];  [5]
  1. Brookhaven National Laboratory (BNL), Upton, NY (United States). National Synchrotron Light Source II (NSLS-II)
  2. Brookhaven National Laboratory (BNL), Upton, NY (United States). Laboratory for BioMolecular Structure (LBMS)
  3. Brookhaven National Laboratory (BNL), Upton, NY (United States)
  4. ShanghaiTech Univ. (China)
  5. Univ. of California, Los Angeles, CA (United States)

The resolution of a mega-electron-volt scanning transmission electron microscope (MeV-STEM) is primarily governed by the properties of the incident electron beam and angular broadening effects that occur within thick biological samples and microchips. A precise understanding and mitigation of these constraints require detailed knowledge of beam emittance, aberrations in the STEM column optics, and energy-dependent elastic and inelastic critical angles of the materials being examined. This simulation study proposes a standardized experimental framework for comprehensively assessing beam intensity, divergence, and size at the sample exit. This framework aims to characterize electron-sample interactions, reconcile discrepancies among analytical models, and validate Monte Carlo (MC) simulations for enhanced predictive accuracy. Our numerical findings demonstrate that precise measurements of these parameters, especially angular broadening, are not only feasible but also essential for optimizing imaging resolution in thick biological samples and microchips. By utilizing an electron source with minimal emittance and tailored beam characteristics, along with amorphous ice and silicon samples as biological proxies and microchip materials, this research seeks to optimize electron beam energy by focusing on parameters to improve the resolution in MeV-STEM/TEM. This optimization is particularly crucial for in situ imaging of thick biological samples and for examining microchip defects with nanometer resolutions. Our ultimate goal is to develop a comprehensive mapping of the minimum electron energy required to achieve a nanoscale resolution, taking into account variations in sample thickness, composition, and imaging mode.

Research Organization:
Brookhaven National Laboratory (BNL), Upton, NY (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Basic Energy Sciences (BES). Scientific User Facilities (SUF)
Grant/Contract Number:
SC0012704
OSTI ID:
2478426
Report Number(s):
BNL--226365-2024-JAAM
Journal Information:
Nanomaterials, Journal Name: Nanomaterials Journal Issue: 22 Vol. 14; ISSN 2079-4991
Publisher:
MDPICopyright Statement
Country of Publication:
United States
Language:
English

References (36)

Logistics of Bone Mineralization in the Chick Embryo Studied by 3D Cryo FIB‐SEM Imaging journal May 2023
Electron Energy-Loss Spectroscopy in the Electron Microscope book January 2011
Thermodynamic Data for Biochemistry and Biotechnology book January 1986
X-Ray Microscopy and Spectromicroscopy book January 1998
Electron Nano-Imaging: Basics of Imaging and Diffraction for TEM and STEM book April 2017
Isolation and preliminary characterisation of DNA-protein complexes from the mitochondria of Saccharomyces cerevisiae journal May 1981
Quantitative energy-filtered electron microscopy of biological molecules in ice journal October 1992
Geant4—a simulation toolkit
  • Agostinelli, S.; Allison, J.; Amako, K.
  • Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, Vol. 506, Issue 3 https://doi.org/10.1016/S0168-9002(03)01368-8
journal July 2003
Cryo FIB-SEM: Volume imaging of cellular ultrastructure in native frozen specimens journal November 2013
Cryo-FIB-SEM serial milling and block face imaging: Large volume structural analysis of biological tissues preserved close to their native state journal December 2016
Cryo-FIB-SEM as a promising tool for localizing proteins in 3D journal July 2020
Recent developments in Geant4
  • Allison, J.; Amako, K.; Apostolakis, J.
  • Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, Vol. 835 https://doi.org/10.1016/j.nima.2016.06.125
journal November 2016
Towards high-throughput in situ structural biology using electron cryotomography journal March 2021
Choice of operating voltage for a transmission electron microscope journal October 2014
Relative merits and limiting factors for x-ray and electron microscopy of thick, hydrated organic materials journal January 2018
Design of compact ultrafast microscopes for single- and multi-shot imaging with MeV electrons journal November 2018
High-Energy Electron Scattering in Thick Samples Evaluated by Bright-Field Transmission Electron Microscopy, Energy-Filtering Transmission Electron Microscopy, and Electron Tomography journal March 2022
Reducing Radiation Damage in Soft Matter with Femtosecond-Timed Single-Electron Packets journal August 2019
Cryo-scanning transmission electron tomography of vitrified cells journal February 2014
Dichotomy in ultrafast atomic dynamics as direct evidence of polaron formation in manganites journal November 2016
Intrinsic emittance reduction in transmission mode photocathodes journal March 2016
A cryogenically cooled high voltage DC photoemission electron source journal August 2018
Examining atherosclerotic lesions in three dimensions at the nanometer scale with cryo-FIB-SEM journal August 2022
Electron beam damage in oxides: a review journal December 2015
Electron tomography in plant cell biology journal November 2018
Electron microscopy for imaging organelles in plants and algae journal September 2021
Single-Shot MeV Transmission Electron Microscopy with Picosecond Temporal Resolution journal August 2014
Valence-electron distribution in MgB 2 by accurate diffraction measurements and first-principles calculations journal February 2004
Demonstration of Single-Shot Picosecond Time-Resolved MeV Electron Imaging Using a Compact Permanent Magnet Quadrupole Based Lens journal July 2016
Radiation damage in single-particle cryo-electron microscopy: effects of dose and dose rate journal April 2011
Geant4 developments and applications journal February 2006
Determination of Bacterial Cell Dry Mass by Transmission Electron Microscopy and Densitometric Image Analysis journal February 1998
Cellular Electron Cryotomography: Toward Structural Biology In Situ journal June 2017
Monte Carlo Simulation of Electron Interactions in an MeV-STEM for Thick Frozen Biological Sample Imaging journal February 2024
Optimize Electron Beam Energy toward In Situ Imaging of Thick Frozen Bio-Samples with Nanometer Resolution Using MeV-STEM journal May 2024
Towards Construction of a Novel Nanometer-Resolution MeV-STEM for Imaging Thick Frozen Biological Samples journal March 2024