Network for knowledge Organization (NEKO): An AI knowledge mining workflow for synthetic biology research

Xiao, Zhengyang; Pakrasi, Himadri B.; Chen, Yixin; Tang, Yinjie J.

doi:10.1016/j.ymben.2024.11.006

Title: Network for knowledge Organization (NEKO): An AI knowledge mining workflow for synthetic biology research

Journal Article · 31 December 2024 · Metabolic Engineering

DOI: https://doi.org/10.1016/j.ymben.2024.11.006 · OSTI ID:2478305

Xiao, Zhengyang; Pakrasi, Himadri B.; Chen, Yixin;

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Sponsoring Organization:: USDOE

OSTI ID:: 2478305

Journal Information:: Metabolic Engineering, Journal Name: Metabolic Engineering Journal Issue: C Vol. 87; ISSN 1096-7176

Publisher:: ElsevierCopyright Statement

Country of Publication:: Belgium

Language:: English

References (12)

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Nature, Nurture, or Chance: Stochastic Gene Expression and Its Consequences Raj, Arjun; van Oudenaarden, Alexander Cell, Vol. 135, Issue 2 https://doi.org/10.1016/j.cell.2008.09.050	journal	October 2008
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Methods for knowledge synthesis: An overview Whittemore, Robin; Chao, Ariana; Jang, Myoungock Heart & Lung, Vol. 43, Issue 5 https://doi.org/10.1016/j.hrtlng.2014.05.014	journal	September 2014
Models of stochastic gene expression Paulsson, Johan Physics of Life Reviews, Vol. 2, Issue 2 https://doi.org/10.1016/j.plrev.2005.03.003	journal	June 2005
Statistical Design of Experiments for Synthetic Biology Gilman, James; Walls, Laura; Bandiera, Lucia ACS Synthetic Biology, Vol. 10, Issue 1 https://doi.org/10.1021/acssynbio.0c00385	journal	January 2021
Generative Artificial Intelligence GPT-4 Accelerates Knowledge Mining and Machine Learning for Synthetic Biology Xiao, Zhengyang; Li, Wenyu; Moon, Hannah ACS Synthetic Biology, Vol. 12, Issue 10, p. 2973-2982 https://doi.org/10.1021/acssynbio.3c00310	journal	September 2023
The model student: GPT-4 performance on graduate biomedical science exams Stribling, Daniel; Xia, Yuxing; Amer, Maha K. Scientific Reports, Vol. 14, Issue 1 https://doi.org/10.1038/s41598-024-55568-7	journal	March 2024
Unifying Large Language Models and Knowledge Graphs: A Roadmap Pan, Shirui; Luo, Linhao; Wang, Yufei IEEE Transactions on Knowledge and Data Engineering, Vol. 36, Issue 7 https://doi.org/10.1109/TKDE.2024.3352100	journal	July 2024
Stochastic Gene Expression in a Single Cell Elowitz, M. B. Science, Vol. 297, Issue 5584 https://doi.org/10.1126/science.1070919	journal	August 2002
What is the most appropriate knowledge synthesis method to conduct a review? Protocol for a scoping review Kastner, Monika; Tricco, Andrea C.; Soobiah, Charlene BMC Medical Research Methodology, Vol. 12, Issue 1 https://doi.org/10.1186/1471-2288-12-114	journal	August 2012
A Comprehensive Review on Synergy of Multi-Modal Data and AI Technologies in Medical Diagnosis Xu, Xi; Li, Jianqiang; Zhu, Zhichao Bioengineering, Vol. 11, Issue 3 https://doi.org/10.3390/bioengineering11030219	journal	February 2024

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