|
LINCS: A linear constraint solver for molecular simulations
|
journal
|
September 1997 |
|
Peptide Folding: When Simulation Meets Experiment
|
journal
|
January 1999 |
|
Molecular basis of the flavin-based electron-bifurcating caffeyl-CoA reductase reaction
|
journal
|
February 2018 |
|
CHARMM: The biomolecular simulation program
|
journal
|
July 2009 |
|
CHARMM: A program for macromolecular energy, minimization, and dynamics calculations
|
journal
|
July 1983 |
|
Comparative Protein Modelling by Satisfaction of Spatial Restraints
|
journal
|
December 1993 |
|
Small-Angle Neutron Scattering for Molecular Biology: Basics and Instrumentation
|
book
|
January 2009 |
|
Protonmotive redox mechanism of the cytochrome b-c 1 complex in the respiratory chain: Protonmotive ubiquinone cycle
|
journal
|
August 1975 |
|
The protonmotive Q cycle: A general formulation
|
journal
|
November 1975 |
|
Possible molecular mechanisms of the protonmotive function of cytochrome systems
|
journal
|
October 1976 |
|
VMD: Visual molecular dynamics
|
journal
|
February 1996 |
|
The electron transfer flavoprotein: Ubiquinone oxidoreductases
|
journal
|
December 2010 |
|
Structural investigation of cellobiose dehydrogenase IIA: Insights from small angle scattering into intra- and intermolecular electron transfer mechanisms
|
journal
|
April 2018 |
|
MDTraj: A Modern Open Library for the Analysis of Molecular Dynamics Trajectories
|
journal
|
October 2015 |
|
Neutron scattering maps the higher-order assembly of NADPH-dependent assimilatory sulfite reductase
|
journal
|
May 2022 |
|
Electron bifurcation
|
journal
|
April 2016 |
|
Fluorescence quenching of flavin adenine dinucleotide in aqueous solution by pH dependent isomerisation and photo-induced electron transfer
|
journal
|
December 2003 |
|
PLUMED: A portable plugin for free-energy calculations with molecular dynamics
|
journal
|
October 2009 |
|
Methods, development and applications of small-angle X-ray scattering to characterize biological macromolecules in solution
|
journal
|
January 2020 |
|
Gating mechanisms for biological electron transfer: Integrating structure with biophysics reveals the nature of redox control in cytochrome P450 reductase and copper-dependent nitrite reductase
|
journal
|
July 2011 |
|
The reductive half-reaction of two bifurcating electron-transferring flavoproteins
|
journal
|
June 2022 |
|
Unusual reactivity of a flavin in a bifurcating electron-transferring flavoprotein leads to flavin modification and a charge-transfer complex
|
journal
|
December 2022 |
|
Noncovalent interactions that tune the reactivities of the flavins in bifurcating electron transferring flavoprotein
|
journal
|
June 2023 |
|
Catalytic Cycle of Human Glutathione Reductase Near 1 Å Resolution
|
journal
|
October 2008 |
|
On the need to introduce environmental characteristics in ab initio protein structure prediction using a coarse-grained UNRES force field
|
journal
|
July 2022 |
|
Small-angle neutron scattering solution structures of NADPH-dependent sulfite reductase
|
journal
|
June 2021 |
Mantid—Data analysis and visualization package for neutron scattering and μ SR experiments
- Arnold, O.; Bilheux, J. C.; Borreguero, J. M.
-
Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, Vol. 764
https://doi.org/10.1016/j.nima.2014.07.029
|
journal
|
November 2014 |
|
Small-angle scattering and 3D structure interpretation
|
journal
|
October 2016 |
|
GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers
|
journal
|
September 2015 |
|
drtsans: The data reduction toolkit for small-angle neutron scattering at Oak Ridge National Laboratory
|
journal
|
July 2022 |
|
Macromolecular room temperature crystallography
|
journal
|
January 2021 |
|
Correlating Conformational Equilibria with Catalysis in the Electron Bifurcating EtfABCX of Thermotoga maritima
|
journal
|
November 2023 |
|
Characterization of the Membrane-Associated Electron-Bifurcating Flavoenzyme EtfABCX from the Hyperthermophilic Bacterium Thermotoga maritima
|
journal
|
December 2023 |
|
Conformational Dynamics in the Interaction of SARS-CoV-2 Papain-like Protease with Human Interferon-Stimulated Gene 15 Protein
|
journal
|
June 2021 |
|
Protein Control of True, Gated, and Coupled Electron Transfer Reactions
|
journal
|
April 2008 |
|
Intraprotein Electron Transfer in a Two-Domain Construct of Neuronal Nitric Oxide Synthase: The Output State in Nitric Oxide Formation
|
journal
|
April 2006 |
|
Sensitivity of Flavin Fluorescence Dynamics in Neuronal Nitric Oxide Synthase to Cofactor-Induced Conformational Changes and Dimerization
|
journal
|
November 1998 |
|
Crystal Structure of Paracoccus denitrificans Electron Transfer Flavoprotein: Structural and Electrostatic Analysis of a Conserved Flavin Binding Domain † , ‡
|
journal
|
February 1999 |
|
Spectral Characteristics of Flavins at the Semiquinoid Oxidation Level1
|
journal
|
October 1956 |
|
Structural Characterization of Flexible Proteins Using Small-Angle X-ray Scattering
|
journal
|
May 2007 |
|
Conformationally Dynamic Radical Transfer within Ribonucleotide Reductase
|
journal
|
November 2017 |
|
A method for efficient isotopic labeling of recombinant proteins
|
journal
|
May 2001 |
|
Atomically defined mechanism for proton transfer to a buried redox centre in a protein
|
journal
|
June 2000 |
|
Structure of the electron transfer complex between ferredoxin and ferredoxin-NADP+ reductase
|
journal
|
February 2001 |
|
Extensive conformational sampling in a ternary electron transfer complex
|
journal
|
February 2003 |
|
The semiquinone swing in the bifurcating electron transferring flavoprotein/butyryl-CoA dehydrogenase complex from Clostridium difficile
|
journal
|
November 2017 |
|
Improving fragment-based ab initio protein structure assembly using low-accuracy contact-map predictions
|
journal
|
August 2021 |
|
Highly accurate protein structure prediction with AlphaFold
|
journal
|
July 2021 |
|
ColabFold: making protein folding accessible to all
|
journal
|
May 2022 |
|
Orchestrated Domain Movement in Catalysis by Cytochrome P450 Reductase
|
journal
|
August 2017 |
|
Using metadynamics to explore complex free-energy landscapes
|
journal
|
March 2020 |
|
Förster resonance energy transfer and kinesin motor proteins
|
journal
|
January 2014 |
|
Spectroscopic, thermodynamic and computational evidence of the locations of the FADs in the nitrogen fixation-associated electron transfer flavoprotein
|
journal
|
January 2019 |
|
Isothermal-isobaric molecular dynamics using stochastic velocity rescaling
|
journal
|
February 2009 |
|
Comparison of simple potential functions for simulating liquid water
|
journal
|
July 1983 |
The life science x-ray scattering beamline at NSLS-II
- DiFabio, Jonathan; Chodankar, Shirish; Pjerov, Sal
-
PROCEEDINGS OF THE 12TH INTERNATIONAL CONFERENCE ON SYNCHROTRON RADIATION INSTRUMENTATION – SRI2015, AIP Conference Proceedings
https://doi.org/10.1063/1.4952872
|
conference
|
January 2016 |
|
Structural basis for human NADPH-cytochrome P450 oxidoreductase deficiency
|
journal
|
August 2011 |
|
Cryoelectron microscopy structure and mechanism of the membrane-associated electron-bifurcating flavoprotein Fix/EtfABCX
|
journal
|
December 2020 |
|
Escaping free-energy minima
|
journal
|
September 2002 |
|
Contrast variation study of specifically deuterated Escherichia coli ribosomal subunits.
|
journal
|
December 1977 |
|
Three-dimensional structure of human electron transfer flavoprotein to 2.1-A resolution
|
journal
|
December 1996 |
|
Three-dimensional structure of NADPH-cytochrome P450 reductase: Prototype for FMN- and FAD-containing enzymes
|
journal
|
August 1997 |
|
Uncovering the [2Fe2S] domain movement in cytochrome bc1 and its implications for energy conversion
|
journal
|
April 2000 |
|
X-ray Scattering Studies of Methylophilus methylotrophus (sp. W3A1) Electron-transferring Flavoprotein
|
journal
|
July 2000 |
|
Protein Dynamics Enhance Electronic Coupling in Electron Transfer Complexes
|
journal
|
June 2001 |
|
Domain Motion in Cytochrome P450 Reductase: CONFORMATIONAL EQUILIBRIA REVEALED BY NMR AND SMALL-ANGLE X-RAY SCATTERING
|
journal
|
October 2009 |
|
Studies on the Mechanism of Electron Bifurcation Catalyzed by Electron Transferring Flavoprotein (Etf) and Butyryl-CoA Dehydrogenase (Bcd) of Acidaminococcus fermentans
|
journal
|
December 2013 |
|
Stabilization of Non-productive Conformations Underpins Rapid Electron Transfer to Electron-transferring Flavoprotein
|
journal
|
June 2005 |
|
Distinct properties underlie flavin-based electron bifurcation in a novel electron transfer flavoprotein FixAB from Rhodopseudomonas palustris
|
journal
|
February 2018 |
|
Solution structure of the cytochrome P450 reductase–cytochrome c complex determined by neutron scattering
|
journal
|
April 2018 |
|
The catalytic mechanism of electron-bifurcating electron transfer flavoproteins (ETFs) involves an intermediary complex with NAD +
|
journal
|
December 2018 |
|
Interaction between NADH and electron-transferring flavoprotein from Megasphaera elsdenii
|
journal
|
March 2013 |
|
FoXS, FoXSDock and MultiFoXS: Single-state and multi-state structural modeling of proteins and their complexes based on SAXS profiles
|
journal
|
May 2016 |
|
Electron-Transferring Flavoprotein Has an AMP-Binding Site in Addition to the FAD-Binding Site1
|
journal
|
August 1993 |
|
Determination of the regularization parameter in indirect-transform methods using perceptual criteria
|
journal
|
August 1992 |
|
Propagating errors in small-angle scattering data treatment
|
journal
|
June 1994 |
|
DNA apophotolyase fromAnacystis nidulans: 1.8 Å structure, 8-HDF reconstitution and X-ray-induced FAD reduction
|
journal
|
June 2004 |
|
The Bio-SANS instrument at the High Flux Isotope Reactor of Oak Ridge National Laboratory
|
journal
|
June 2014 |
|
ATSAS 2.8 : a comprehensive data analysis suite for small-angle scattering from macromolecular solutions
|
journal
|
June 2017 |
|
BioXTAS RAW : improvements to a free open-source program for small-angle X-ray scattering data reduction and analysis
|
journal
|
September 2017 |
|
Solution scattering at the Life Science X-ray Scattering (LiX) beamline
|
journal
|
March 2020 |
|
Advanced ensemble modelling of flexible macromolecules using X-ray solution scattering
|
journal
|
February 2015 |
|
Pepsi-SAXS : an adaptive method for rapid and accurate computation of small-angle X-ray scattering profiles
|
journal
|
April 2017 |
|
Neutron scattering in the biological sciences: progress and prospects
|
journal
|
December 2018 |
|
Reduction of ferredoxin or oxygen by flavin-based electron bifurcation in Megasphaera elsdenii
|
journal
|
May 2015 |
|
Modulations of the reduction potentials of flavin‐based electron bifurcation complexes and semiquinone stabilities are key to control directional electron flow
|
journal
|
May 2020 |
|
Dynamics driving function − new insights from electron transferring flavoproteins and partner complexes: ETF and partners - structure, function and dynamics
|
journal
|
October 2007 |
|
High-resolution crystal structures of the flavoprotein NrdI in oxidized and reduced states - an unusual flavodoxin: NrdI - an unusual flavodoxin
|
journal
|
September 2010 |
|
Structure of a trapped radical transfer pathway within a ribonucleotide reductase holocomplex
|
journal
|
March 2020 |
|
Accurate prediction of protein structures and interactions using a three-track neural network
|
journal
|
July 2021 |
|
Energy Conservation via Electron-Transferring Flavoprotein in Anaerobic Bacteria
|
journal
|
November 2007 |
|
Trapping Conformational States Along Ligand-Binding Dynamics of Peptide Deformylase: The Impact of Induced Fit on Enzyme Catalysis
|
journal
|
May 2011 |
|
Cryo-EM Analyses Permit Visualization of Structural Polymorphism of Biological Macromolecules
|
journal
|
December 2021 |
|
Flavin-Based Electron Bifurcation, Ferredoxin, Flavodoxin, and Anaerobic Respiration With Protons (Ech) or NAD+ (Rnf) as Electron Acceptors: A Historical Review
|
journal
|
March 2018 |
|
A Unified User-Friendly Instrument Control and Data Acquisition System for the ORNL SANS Instrument Suite
|
journal
|
January 2021 |
|
Methods for Obtaining Better Diffractive Protein Crystals: From Sample Evaluation to Space Crystallization
|
journal
|
January 2020 |
|
Structure and flexibility within proteins as identified through small angle X-ray scattering
|
journal
|
January 2009 |
|
Structure-based electron-confurcation mechanism of the Ldh-EtfAB complex
|
journal
|
June 2022 |