Complete genome of Variovorax sp. EBFNA2, isolated from a surface-sterilized fava bean nodule

Hirsch, Ann M.; Humm, Ethan; Rubbi, Liudmilla; Del Vecchio, Giorgia; Ha, Sung Min; Pellegrini, Matteo; Gunsalus, Robert P.; Becket, ed., Elinne

doi:10.1128/mra.00762-24

Title: Complete genome of Variovorax sp. EBFNA2, isolated from a surface-sterilized fava bean nodule

Journal Article · 12 December 2024 · Microbiology Resource Announcements

DOI: https://doi.org/10.1128/mra.00762-24 · OSTI ID:2476743

;

; Rubbi, Liudmilla; Del Vecchio, Giorgia; Ha, Sung Min; Pellegrini, Matteo;

; Becket, ed., Elinne

ABSTRACT We report the complete genome sequence of Variovorax sp. EBFNA2, a fava bean nodule endophyte. The strain appears to be a new species, and its genome provides insight into its interactions with host plants and potential to promote plant growth and crop yield.

View Journal Article

Cite

Export

Save

Sponsoring Organization:: USDOE

Grant/Contract Number:: FC02-02ER63421

OSTI ID:: 2476743

Journal Information:: Microbiology Resource Announcements, Journal Name: Microbiology Resource Announcements Journal Issue: 12 Vol. 13; ISSN 2576-098X

Publisher:: American Society for MicrobiologyCopyright Statement

Country of Publication:: United States

Language:: English

References (13)

A large-scale evaluation of algorithms to calculate average nucleotide identity Yoon, Seok-Hwan; Ha, Sung-min; Lim, Jeongmin Antonie van Leeuwenhoek, Vol. 110, Issue 10 https://doi.org/10.1007/s10482-017-0844-4	journal	February 2017
Acrylamide biodegradation ability and plant growth-promoting properties of Variovorax boronicumulans CGMCC 4969 Liu, Zhong-Hua; Cao, Yu-Min; Zhou, Qian-Wen Biodegradation, Vol. 24, Issue 6 https://doi.org/10.1007/s10532-013-9633-6	journal	April 2013
Biotransformation of the Neonicotinoid Insecticide Thiacloprid by the Bacterium Variovorax boronicumulans Strain J1 and Mediation of the Major Metabolic Pathway by Nitrile Hydratase Zhang, Hui-Juan; Zhou, Qian-Wen; Zhou, Guang-Can Journal of Agricultural and Food Chemistry, Vol. 60, Issue 1 https://doi.org/10.1021/jf203232u	journal	December 2011
Streptomycesbiostimulants: an effective sustainable approach to reduce inorganic N input and maintain high yield of wheat crop in different soil types Youseif, Sameh H.; El-Megeed, Fayrouz H. Abd; Salous, Mousa S. Journal of Applied Microbiology, Vol. 134, Issue 8 https://doi.org/10.1093/jambio/lxad156	journal	July 2023
NCBI prokaryotic genome annotation pipeline Tatusova, Tatiana; DiCuccio, Michael; Badretdin, Azat Nucleic Acids Research, Vol. 44, Issue 14 https://doi.org/10.1093/nar/gkw569	journal	June 2016
Variovorax boronicumulans sp. nov., a boron-accumulating bacterium isolated from soil Miwa, H.; Ahmed, I.; Yoon, J. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 58, Issue 1 https://doi.org/10.1099/ijs.0.65315-0	journal	January 2008
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes Parks, Donovan H.; Imelfort, Michael; Skennerton, Connor T. Genome Research, Vol. 25, Issue 7 https://doi.org/10.1101/gr.186072.114	journal	May 2015
Canu: scalable and accurate long-read assembly via adaptive k -mer weighting and repeat separation Koren, Sergey; Walenz, Brian P.; Berlin, Konstantin Genome Research, Vol. 27, Issue 5 https://doi.org/10.1101/gr.215087.116	journal	March 2017
Characterization of nitrilases from Variovorax boronicumulans that functions in insecticide flonicamid degradation and β-cyano-L-alanine detoxification Jiang, Huoyong; Jiang, Nengdang; Wang, Li Journal of Applied Microbiology, Vol. 133, Issue 2 https://doi.org/10.1111/jam.15561	journal	August 2022
The Plant Growth-Promoting Rhizobacterium Variovorax boronicumulans CGMCC 4969 Regulates the Level of Indole-3-Acetic Acid Synthesized from Indole-3-Acetonitrile Sun, Shi-Lei; Yang, Wen-Long; Fang, Wen-Wan Applied and Environmental Microbiology, Vol. 84, Issue 16 https://doi.org/10.1128/AEM.00298-18	journal	August 2018
Draft Genome Sequence of Phenol-Degrading Variovorax boronicumulans Strain HAB-30 Aziz, Fatma Azwani Abdul; Suzuki, Kenshi; Moriuchi, Ryota Microbiology Resource Announcements, Vol. 9, Issue 7 https://doi.org/10.1128/MRA.01478-19	journal	February 2020
Comparative Analysis of the Cultured and Total Bacterial Community in the Wheat Rhizosphere Microbiome Using Culture-Dependent and Culture-Independent Approaches Youseif, Sameh H.; Abd El-Megeed, Fayrouz H.; Humm, Ethan A. Microbiology Spectrum, Vol. 9, Issue 2 https://doi.org/10.1128/Spectrum.00678-21	journal	October 2021
Circlator: automated circularization of genome assemblies using long sequencing reads Hunt, Martin; Silva, Nishadi De; Otto, Thomas D. Genome Biology, Vol. 16, Issue 1 https://doi.org/10.1186/s13059-015-0849-0	journal	December 2015

Similar Records

High-Quality Draft Genome Sequences of Four Lignocellulose-Degrading Bacteria Isolated from Puerto Rican Forest Soil: Gordonia sp., Paenibacillus sp., Variovorax sp., and Vogesella sp

Journal Article · 2017 · Genome Announcements · OSTI ID:1608709

Woo, Hannah L.; DeAngelis, Kristen M.; Teshima, Hazuki; +16 more

Draft Genome Sequence of Frankia Strain G2, a Nitrogen-Fixing Actinobacterium Isolated from Casuarina equisetifolia and Able To Nodulate Actinorhizal Plants of the Order Rhamnales

Journal Article · 2016 · Genome Announcements · OSTI ID:1786400

Nouioui, Imen; Gtari, Maher; Göker, Markus; +13 more

Permanent Draft Genome Sequence of Nocardia sp. BMG111209, an Actinobacterium Isolated from Nodules of Casuarina glauca

Journal Article · 2016 · Genome Announcements · OSTI ID:1786483

Ghodhbane-Gtari, Faten; Beauchemin, Nicholas; Gueddou, Abdellatif; +16 more

Title: Complete genome of Variovorax sp. EBFNA2, isolated from a surface-sterilized fava bean nodule

Citation Formats

References (13)

Similar Records

Related Subjects