DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: VitroJet: new features and case studies

Journal Article · · Acta Crystallographica. Section D. Structural Biology
 [1]; ORCiD logo [2];  [3];  [4];  [2];  [3];  [2]; ORCiD logo [5];  [5];  [6];  [7]; ORCiD logo [3]; ORCiD logo [3]; ORCiD logo [4]; ORCiD logo [3]; ORCiD logo [8];  [9]
  1. CryoSol-World, Weert (Netherlands); Maastricht University (Netherlands)
  2. Forschungszentrum Juelich (Germany)
  3. Univ. of Helsinki (Finland)
  4. Astex Pharmaceuticals (United Kingdom)
  5. Goethe Univ., Frankfurt (Germany)
  6. RWTH Aachen Univ. (Germany)
  7. Univ. of Jyvaskyla (Finland)
  8. Maastricht University (Netherlands)
  9. CryoSol-World, Weert (Netherlands)

Single-particle cryo-electron microscopy has become a widely adopted method in structural biology due to many recent technological advances in microscopes, detectors and image processing. Before being able to inspect a biological sample in an electron microscope, it needs to be deposited in a thin layer on a grid and rapidly frozen. The VitroJet was designed with this aim, as well as avoiding the delicate manual handling and transfer steps that occur during the conventional grid-preparation process. Since its creation, numerous technical developments have resulted in a device that is now widely utilized in multiple laboratories worldwide. It features plasma treatment, low-volume sample deposition through pin printing, optical ice-thickness measurement and cryofixation of pre-clipped Autogrids through jet vitrification. This paper presents recent technical improvements to the VitroJet and the benefits that it brings to the cryo-EM workflow. A wide variety of applications are shown: membrane proteins, nucleosomes, fatty-acid synthase, Tobacco mosaic virus, lipid nanoparticles, tick-borne encephalitis viruses and bacteriophages. These case studies illustrate the advancement of the VitroJet into an instrument that enables accurate control and reproducibility, demonstrating its suitability for time-efficient cryo-EM structure determination.

Research Organization:
Pacific Northwest National Laboratory (PNNL), Richland, WA (United States). Environmental Molecular Sciences Laboratory (EMSL)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
Grant/Contract Number:
AC05-76RL01830
OSTI ID:
2471651
Journal Information:
Acta Crystallographica. Section D. Structural Biology, Journal Name: Acta Crystallographica. Section D. Structural Biology Journal Issue: 4 Vol. 80; ISSN 2059-7983
Publisher:
International Union of CrystallographyCopyright Statement
Country of Publication:
United States
Language:
English

References (64)

Modular Lipid Nanoparticle Platform Technology for siRNA and Lipophilic Prodrug Delivery journal August 2021
Die Bedeutung der �bermikroskopie f�r die Virusforschung journal February 1939
The 2017 Nobel Prize in Chemistry: cryo-EM comes of age journal February 2018
Helmut Ruska and the visualisation of viruses journal May 2000
Specimen Preparation for High-Resolution Cryo-EM book June 2016
Microscale Fluid Behavior during Cryo-EM Sample Blotting journal February 2020
Fragment-based drug discovery using cryo-EM journal March 2020
mRNA-lipid nanoparticle COVID-19 vaccines: Structure and stability journal May 2021
Cryo-EM grid optimization for membrane proteins journal March 2021
Retrospective on the early development of cryoelectron microscopy of macromolecules and a prospective on opportunities for the future journal September 2008
Spotiton: A prototype for an integrated inkjet dispense and vitrification system for cryo-TEM journal July 2012
Seeing tobacco mosaic virus through direct electron detectors journal February 2015
Blotting-free and lossless cryo-electron microscopy grid preparation from nanoliter-sized protein samples and single-cell extracts journal March 2017
Spotiton: New features and applications journal May 2018
A simple and robust procedure for preparing graphene-oxide cryo-EM grids journal October 2018
Endocytosed nanogold fiducials for improved in-situ cryo–electron tomography tilt-series alignment journal March 2021
Structure of the Yersinia injectisome in intracellular host cell phagosomes revealed by cryo FIB electron tomography journal March 2021
Measuring cryo-TEM sample thickness using reflected light microscopy and machine learning journal June 2023
Amorphous nickel titanium alloy film: A new choice for cryo electron microscopy sample preparation journal October 2020
Resolution advances in cryo-EM enable application to drug discovery journal December 2016
Membrane mimetic systems in CryoEM: keeping membrane proteins in their native environment journal October 2019
Time resolved applications for Cryo-EM; approaches, challenges and future directions journal December 2023
Need for Speed: Examining Protein Behavior during CryoEM Grid Preparation at Different Timescales journal November 2020
Phase contrast STEM for thin samples: Integrated differential phase contrast journal January 2016
Analysis of depth-sectioning STEM for thick samples and 3D imaging journal December 2019
Single particle electron cryomicroscopy: trends, issues and future perspective journal January 2016
Setting up and operating a cryo-EM laboratory journal January 2021
Algorithmic Advances in Single Particle Cryo-EM Data Processing Using CryoSPARC journal July 2020
On the Formation and Morphology of Lipid Nanoparticles Containing Ionizable Cationic Lipids and siRNA journal April 2018
The revolution will not be crystallized: a new method sweeps through structural biology journal September 2015
Revolutionary cryo-EM is taking over structural biology journal February 2020
Drug designers embrace cryo-EM journal July 2018
Engineering fungal de novo fatty acid synthesis for short chain fatty acid production journal March 2017
The development of cryo-EM into a mainstream structural biology technique journal December 2015
cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination journal February 2017
Cryo-EM in drug discovery: achievements, limitations and prospects journal June 2018
Measuring the effects of particle orientation to improve the efficiency of electron cryomicroscopy journal September 2017
Cryo-EM structures from sub-nl volumes using pin-printing and jet vitrification journal May 2020
Automated vitrification of cryo-EM samples with controllable sample thickness using suction and real-time optical inspection journal May 2022
Membrane-destabilizing ionizable phospholipids for organ-selective mRNA delivery and CRISPR–Cas gene editing journal February 2021
Engineering precision nanoparticles for drug delivery journal December 2020
Lipid nanoparticles for mRNA delivery journal August 2021
Reducing effects of particle adsorption to the air–water interface in cryo-EM journal September 2018
Non-uniform refinement: adaptive regularization improves single-particle cryo-EM reconstruction journal November 2020
Understanding the invisible hands of sample preparation for cryo-EM journal May 2021
Phase contrast scanning transmission electron microscopy imaging of light and heavy atoms at the limit of contrast and resolution journal February 2018
Ice thickness monitoring for cryo-EM grids by interferometry imaging journal September 2022
Optimization of phospholipid chemistry for improved lipid nanoparticle (LNP) delivery of messenger RNA (mRNA) journal January 2022
Efficacy and Safety of the mRNA-1273 SARS-CoV-2 Vaccine journal February 2021
Human fatty acid synthase: Structure and substrate selectivity of the thioesterase domain journal October 2004
Microfluidic protein isolation and sample preparation for high-resolution cryo-EM journal July 2019
The resolution revolution in cryoEM requires high-quality sample preparation: a rapid pipeline to a high-resolution map of yeast fatty acid synthase journal January 2020
High-resolution single-particle cryo-EM of samples vitrified in boiling nitrogen journal September 2021
Fully automated multi-grid cryoEM screening using Smart Leginon journal January 2023
`Cryo-EM': electron cryomicroscopy, cryo electron microscopy or something else? journal September 2023
Approaches to altering particle distributions in cryo-electron microscopy sample preparation journal May 2018
Current outcomes when optimizing ‘standard’ sample preparation for single‐particle cryo‐EM journal October 2019
The Use of a Cold Gas Plasma for the Final Processing of Contamination-Free Tem Specimens journal January 1997
Benchmarking cryo-EM Single Particle Analysis Workflow journal June 2018
Cryo-EM Grid Preparation of Membrane Protein Samples for Single Particle Analysis journal July 2018
Recent Technical Advances in Sample Preparation for Single-Particle Cryo-EM journal June 2022
Practices for running a research-oriented shared cryo-EM facility journal September 2022
High-Throughput Crystallization Pipeline at the Crystallography Core Facility of the Institut Pasteur journal December 2019
Protein denaturation at the air-water interface and how to prevent it journal April 2019