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LC‐MS Data Processing with MAVEN: A Metabolomic Analysis and Visualization Engine
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Parallel‐Meta Suite: Interactive and rapid microbiome data analysis on multiple platforms
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Effects of copper on nitrous oxide (N2O) reduction in denitrifiers and N2O emissions from agricultural soils
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September 2019 |
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Metabolome changes are induced in the arbuscular mycorrhizal fungus Gigaspora margarita by germination and by its bacterial endosymbiont
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June 2018 |
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The effect of pH on Marinobacter hydrocarbonoclasticus denitrification pathway and nitrous oxide reductase
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August 2020 |
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Desulfosporosinus acidiphilus sp. nov.: a moderately acidophilic sulfate-reducing bacterium isolated from acid mining drainage sediments: New taxa: Firmicutes (Class Clostridia, Order Clostridiales, Family Peptococcaceae)
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April 2010 |
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Desulfosporosinus acididurans sp. nov.: an acidophilic sulfate-reducing bacterium isolated from acidic sediments
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November 2014 |
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Introducing EzAAI: a pipeline for high throughput calculations of prokaryotic average amino acid identity
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April 2021 |
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Seasonal changes of CO2, CH4 and N2O fluxes in relation to land-use change in tropical peatlands located in coastal area of South Kalimantan
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July 2003 |
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Enrichment, Cultivation, and Detection of Reductively Dechlorinating Bacteria
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January 2005 |
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Exchange of trace gases between soils and the atmosphere in Scots pine forest ecosystems of the northeastern German lowlands
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August 2002 |
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Sec- and Tat-mediated protein secretion across the bacterial cytoplasmic membrane—Distinct translocases and mechanisms
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September 2008 |
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Nitrous oxide-sink capability of denitrifying bacteria impacted by nitrite and pH
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January 2022 |
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The unprecedented nos gene cluster of Wolinella succinogenes encodes a novel respiratory electron transfer pathway to cytochrome c nitrous oxide reductase
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June 2004 |
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Biogeochemical Implications of N2O-Reducing Thermophilic Campylobacteria in Deep-Sea Vent Fields, and the Description of Nitratiruptor labii sp. nov.
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September 2020 |
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The N2O product ratio of nitrification and its dependence on long-term changes in soil pH
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August 2007 |
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Carbon and oxygen controls on N2O and N2 production during nitrate reduction
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October 2010 |
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Spatial variation in soil pH controls off-season N2O emission in an agricultural soil
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August 2016 |
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Nitrite kinetics during anoxia: The role of abiotic reactions versus microbial reduction
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April 2018 |
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Soil NO3− level and O2 availability are key factors in controlling N2O reduction to N2 following long-term liming of an acidic sandy soil
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May 2019 |
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Nitrite accumulation and impairment of N2O reduction explains contrasting soil denitrification phenotypes
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March 2022 |
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Contrasting effects of straw and biochar on microscale heterogeneity of soil O2 and pH: Implication for N2O emissions
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March 2022 |
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Life in acid: pH homeostasis in acidophiles
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April 2007 |
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Genomics and Ecology of Novel N2O-Reducing Microorganisms
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January 2018 |
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Effect of pH on N2O reduction and accumulation during denitrification by methanol utilizing denitrifiers
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October 2012 |
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Enhancement of denitrification performance with reduction of nitrite accumulation and N2O emission by Shewanella oneidensis MR-1 in microbial denitrifying process
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February 2020 |
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Metabolomic Analysis via Reversed-Phase Ion-Pairing Liquid Chromatography Coupled to a Stand Alone Orbitrap Mass Spectrometer
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April 2010 |
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Inhibition of Methylmercury and Methane Formation by Nitrous Oxide in Arctic Tundra Soil Microcosms
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March 2023 |
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Organohalide Respiration with Chlorinated Ethenes under Low pH Conditions
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July 2017 |
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Nitrous Oxide Is a Potent Inhibitor of Bacterial Reductive Dechlorination
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December 2018 |
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Contrasting denitrifier communities relate to contrasting N2O emission patterns from acidic peat soils in arctic tundra
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December 2011 |
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Refined experimental annotation reveals conserved corrinoid autotrophy in chloroform-respiring Dehalobacter isolates
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November 2016 |
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Consortia of low-abundance bacteria drive sulfate reduction-dependent degradation of fermentation products in peat soil microcosms
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March 2016 |
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Phenotypic and genotypic richness of denitrifiers revealed by a novel isolation strategy
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July 2017 |
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Nextflow enables reproducible computational workflows
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April 2017 |
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N2 production rates limited by nitrite availability in the Bay of Bengal oxygen minimum zone
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December 2016 |
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How a century of ammonia synthesis changed the world
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September 2008 |
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Fast gapped-read alignment with Bowtie 2
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March 2012 |
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DADA2: High-resolution sample inference from Illumina amplicon data
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May 2016 |
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Linking meta-omics to the kinetics of denitrification intermediates reveals pH-dependent causes of N2O emissions and nitrite accumulation in soil
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July 2021 |
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Response of N2O production rate to ocean acidification in the western North Pacific
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November 2019 |
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The social network of microorganisms — how auxotrophies shape complex communities
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March 2018 |
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Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
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July 2019 |
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Effect of pH on the denitrification proteome of the soil bacterium Paracoccus denitrificans PD1222
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August 2021 |
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Unexpected nondenitrifier nitrous oxide reductase gene diversity and abundance in soils
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November 2012 |
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Copper control of bacterial nitrous oxide emission and its impact on vitamin B12-dependent metabolism
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November 2013 |
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Syntrophic exchange in synthetic microbial communities
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April 2014 |
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Networks of energetic and metabolic interactions define dynamics in microbial communities
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November 2015 |
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Functional assembly of nitrous oxide reductase provides insights into copper site maturation
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June 2019 |
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cblaster: a remote search tool for rapid identification and visualization of homologous gene clusters
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June 2021 |
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Nonpareil: a redundancy-based approach to assess the level of coverage in metagenomic datasets
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October 2013 |
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MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
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January 2015 |
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fastp: an ultra-fast all-in-one FASTQ preprocessor
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September 2018 |
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RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference
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May 2019 |
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GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database
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November 2019 |
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KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold
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November 2019 |
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Genomic insights into a new acidophilic, copper-resistant Desulfosporosinus isolate from the oxidized tailings area of an abandoned gold mine
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May 2016 |
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Nitrous oxide inhibition of methanogenesis represents an underappreciated greenhouse gas emission feedback
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January 2024 |
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MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
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January 2013 |
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ModelTest-NG: A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models
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August 2019 |
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The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
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January 2000 |
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The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
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November 2012 |
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Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
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August 2012 |
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The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
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November 2013 |
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nf-core/mag: a best-practice pipeline for metagenome hybrid assembly and binning
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January 2022 |
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Desulfosporosinus metallidurans sp. nov., an acidophilic, metal-resistant sulfate-reducing bacterium from acid mine drainage
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July 2021 |
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DeepTMHMM predicts alpha and beta transmembrane proteins using deep neural networks
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preprint
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April 2022 |
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CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
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May 2015 |
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The pH dependency of N-converting enzymatic processes, pathways and microbes: effect on net N 2 O production: pH dependency of N-converting enzymatic processes, pathways and microbes
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March 2018 |
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Competition for electrons favours N2O reduction in denitrifying Bradyrhizobium isolates
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February 2021 |
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Enrichment and isolation of acidophilic sulfate-reducing bacteria from Tinto River sediments: Acidophilic SRB from Tinto River
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May 2013 |
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ggtree : an r package for visualization and annotation of phylogenetic trees with their covariates and other associated data
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September 2016 |
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Strong pH influence on N 2 O and CH 4 fluxes from forested organic soils
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June 2009 |
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Denitrification at pH 4 by a soil-derived Rhodanobacter-dominated community: Denitrification at pH 4
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December 2010 |
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Nitrous Oxide (N2O): The Dominant Ozone-Depleting Substance Emitted in the 21st Century
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August 2009 |
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Can Microscale Chemical Patches Persist in the Sea? Microelectrode Study of Marine Snow, Fecal Pellets
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February 1987 |
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Nitrous Oxide Reduction Kinetics Distinguish Bacteria Harboring Clade I NosZ from Those Harboring Clade II NosZ
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April 2016 |
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Metagenomic Characterization of Soil Microbial Communities in the Luquillo Experimental Forest (Puerto Rico) and Implications for Nitrogen Cycling
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May 2021 |
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Denitrification Response Patterns during the Transition to Anoxic Respiration and Posttranscriptional Effects of Suboptimal pH on Nitrogen Oxide Reductase in Paracoccus denitrificans
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August 2010 |
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Enhancement of Nitrous Oxide Emissions in Soil Microbial Consortia via Copper Competition between Proteobacterial Methanotrophs and Denitrifiers
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February 2021 |
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16S rRNA Gene-Based Detection of Tetrachloroethene-Dechlorinating Desulfuromonas and Dehalococcoides Species
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April 2000 |
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Quantitative PCR Targeting 16S rRNA and Reductive Dehalogenase Genes Simultaneously Monitors Multiple Dehalococcoides Strains
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BtsT, a Novel and Specific Pyruvate/H+ Symporter in Escherichia coli
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October 2017 |
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Complete Genome Sequences of Desulfosporosinus orientis DSM765T, Desulfosporosinus youngiae DSM17734T, Desulfosporosinus meridiei DSM13257T, and Desulfosporosinus acidiphilus DSM22704T
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October 2012 |
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Mass Spectrometric Studies of the Effect of pH on the Accumulation of Intermediates in Denitrification by Paracoccus denitrificans
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Initial Characterization of a Reductive Dehalogenase from Desulfitobacterium chlororespirans Co23.
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Genome Sequence of the Moderately Acidophilic Sulfate-Reducing Firmicute Desulfosporosinus acididurans (Strain M1 T )
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Anaerobic Microbial Metabolism of Dichloroacetate
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April 2021 |
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Impaired Reduction of N2O to N2 in Acid Soils Is Due to a Posttranscriptional Interference with the Expression of nosZ
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June 2014 |
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A Dual Enrichment Strategy Provides Soil- and Digestate-Competent Nitrous Oxide-Respiring Bacteria for Mitigating Climate Forcing in Agriculture
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June 2022 |
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Influence of interfaces on microbial activity
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March 1990 |
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Clarifying Microbial Nitrous Oxide Reduction under Aerobic Conditions: Tolerant, Intolerant, and Sensitive
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BLAST+: architecture and applications
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Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction
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Singularity: Scientific containers for mobility of compute
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Cutadapt removes adapter sequences from high-throughput sequencing reads
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May 2011 |
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Anoxic growth of Ensifer meliloti 1021 by N2O-reduction, a potential mitigation strategy
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May 2015 |
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Compilation of Henry's law constants (version 4.0) for water as solvent
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Coupled abiotic-biotic cycling of nitrous oxide in tropical peatlands
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The enveomics collection: a toolbox for specialized analyses of microbial genomes and metagenomes
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MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
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