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Title: The influence of microbial colonization on inflammatory versus pro-healing trajectories in combat extremity wounds

Journal Article · · Scientific Reports
 [1];  [1];  [2];  [1];  [1];  [3];  [1];  [1];  [4];  [3];  [3];  [3];  [5];  [5];  [5];  [5];  [6];  [3];  [6]
  1. Uniformed Services University of the Health Sciences, Bethesda, MD (United States); Henry M. Jackson Foundation for the Advancement of Military Medicine, Inc., Bethesda, MD (United States)
  2. Q2 Solutions, Durham, NC (United States); Uniformed Services University of the Health Sciences, Bethesda, MD (United States); Henry M. Jackson Foundation for the Advancement of Military Medicine, Inc., Bethesda, MD (United States)
  3. Uniformed Services University of the Health Sciences, Bethesda, MD (United States)
  4. Lawrence Livermore National Laboratory (LLNL), Livermore, CA (United States)
  5. Univ. of Pittsburgh, PA (United States)
  6. Uniformed Services University of the Health Sciences, Bethesda, MD (United States); Walter Reed Army Institute of Research, Bethesda, MD (United States)

A combination of improved body armor, medical transportation, and treatment has led to the increased survival of warfighters from combat extremity injuries predominantly caused by blasts in modern conflicts. Despite advances, a high rate of complications such as wound infections, wound failure, amputations, and a decreased quality of life exist. To study the molecular underpinnings of wound failure, wound tissue biopsies from combat extremity injuries had RNA extracted and sequenced. Wounds were classified by colonization (colonized vs. non-colonized) and outcome (healed vs. failed) status. Differences in gene expression were investigated between timepoints at a gene level, and longitudinally by multi-gene networks, inferred proportions of immune cells, and expression of healing-related functions. Differences between wound outcomes in colonized wounds were more apparent than in non-colonized wounds. Colonized/healed wounds appeared able to mount an adaptive immune response to infection and progress beyond the inflammatory stage of healing, while colonized/failed wounds did not. Although, both colonized and non-colonized failed wounds showed increasing inferred immune and inflammatory programs, non-colonized/failed wounds progressed beyond the inflammatory stage, suggesting different mechanisms of failure dependent on colonization status. Overall, these data reveal gene expression profile differences in healing wounds that may be utilized to improve clinical treatment paradigms.

Research Organization:
Lawrence Livermore National Laboratory (LLNL), Livermore, CA (United States)
Sponsoring Organization:
USDOE; Defense Advanced Research Projects Agency (DARPA)
Grant/Contract Number:
AC52-07NA27344
OSTI ID:
2471182
Journal Information:
Scientific Reports, Journal Name: Scientific Reports Journal Issue: 1 Vol. 14; ISSN 2045-2322
Publisher:
Nature Publishing GroupCopyright Statement
Country of Publication:
United States
Language:
English

References (33)

Ukraine's Experience with Management of Combat Casualties Using NATO's Four‐Tier “Changing as Needed” Healthcare System journal September 2022
Challenges in definitive fracture management of blast injuries journal June 2015
Lessons of War: Turning Data Into Decisions journal September 2015
Extremity injuries sustained by the UK military in the Iraq and Afghanistan conflicts: 2003–2014 journal July 2017
Commensal bacteria regulate Toll-like receptor 3–dependent inflammation after skin injury journal November 2009
Metagenomic features of bioburden serve as outcome indicators in combat extremity wounds journal August 2022
Combat casualty care and lessons learned from the past 100 years of war journal June 2017
Inflammatory Response Is Associated with Critical Colonization in Combat Wounds journal October 2011
Transcriptomic, Proteomic, and Morphologic Characterization of Healing in Volumetric Muscle Loss journal December 2022
Innate and Adaptive Immune Responses in Wound Epithelialization journal July 2014
HTSeq--a Python framework to work with high-throughput sequencing data journal September 2014
Combining multiple tools outperforms individual methods in gene set enrichment analyses journal September 2016
KEGG: Kyoto Encyclopedia of Genes and Genomes journal January 2000
The reactome pathway knowledgebase 2022 journal November 2021
The UCSC Table Browser data retrieval tool journal January 2004
g:Profiler—a web-based toolset for functional profiling of gene lists from large-scale experiments journal July 2007
MapSplice: Accurate mapping of RNA-seq reads for splice junction discovery journal August 2010
The Nature and Incidence of Musculoskeletal Combat Wounds in Iraq and Afghanistan (2005–2009) journal January 2013
Reoperation After Combat-Related Major Lower Extremity Amputations journal April 2014
War Wounds: Lessons Learned from Operation Iraqi Freedom journal July 2008
The nature and extent of war injuries sustained by combat specialty personnel killed and wounded in Afghanistan and Iraq, 2003–2011 journal August 2013
Utilizing Precision Medicine to Estimate Timing for Surgical Closure of Traumatic Extremity Wounds journal January 2019
Inflammatory Biomarkers in Combat Wound Healing journal January 2009
Wound healing: cellular mechanisms and pathological outcomes journal September 2020
Strengthening the emergency health response to children wounded by explosive weapons in conflict journal August 2022
Wound Healing: A Cellular Perspective journal January 2019
BioMart – biological queries made easy journal January 2009
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 journal December 2014
Molecular and pharmacological modulators of the tumor immune contexture revealed by deconvolution of RNA-seq data journal May 2019
A Dynamic View of Trauma/Hemorrhage-Induced Inflammation in Mice: Principal Drivers and Networks journal May 2011
Alarming Cargo: The Role of Exosomes in Trauma-Induced Inflammation journal March 2021
The Role of the Inflammatory Response in Mediating Functional Recovery Following Composite Tissue Injuries journal December 2021
Extremity Trauma Research in the United States Army journal October 2006