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Raman spectroscopic study of the effects of Ca2+, Mg2+, Zn2+, and Cd2+ ions on calf thymus DNA: Binding sites and conformational changes
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January 1990 |
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The M06 suite of density functionals for main group thermochemistry, thermochemical kinetics, noncovalent interactions, excited states, and transition elements: two new functionals and systematic testing of four M06-class functionals and 12 other functionals
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July 2007 |
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Avoiding the integral storage bottleneck in LCAO calculations of electron correlation
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January 1989 |
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A direct MP2 gradient method
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February 1990 |
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Semi-direct algorithms for the MP2 energy and gradient
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February 1990 |
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Analytic MP2 frequencies without fifth-order storage. Theory and application to bifurcated hydrogen bonds in the water hexamer
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March 1994 |
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VMD: Visual molecular dynamics
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February 1996 |
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The effect of metal cations on the phase behavior and hydration characteristics of phospholipid membranes
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May 2002 |
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Multiplicity of metal ion binding patterns to nucleobases
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May 2000 |
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Molecular dynamics simulations of water and biomolecules with a Monte Carlo constant pressure algorithm
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January 2004 |
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Automatic atom type and bond type perception in molecular mechanical calculations
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October 2006 |
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Metal Ion Modeling Using Classical Mechanics
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January 2017 |
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Parameterization of Monovalent Ions for the OPC3, OPC, TIP3P-FB, and TIP4P-FB Water Models
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February 2021 |
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Rational Design of Nonbonded Point Charge Models for Divalent Metal Cations with Lennard-Jones 12-6 Potential
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July 2021 |
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Systematic Parametrization of Divalent Metal Ions for the OPC3, OPC, TIP3P-FB, and TIP4P-FB Water Models
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June 2020 |
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Optimized Magnesium Force Field Parameters for Biomolecular Simulations with Accurate Solvation, Ion-Binding, and Water-Exchange Properties
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March 2021 |
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Parametrization of Trivalent and Tetravalent Metal Ions for the OPC3, OPC, TIP3P-FB, and TIP4P-FB Water Models
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journal
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April 2021 |
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Development of Site-Specific Mg 2+ –RNA Force Field Parameters: A Dream or Reality? Guidelines from Combined Molecular Dynamics and Quantum Mechanics Simulations
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December 2016 |
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Thermodynamics of Metal–Acetate Interactions
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January 2024 |
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Balancing the Interactions of Mg 2+ in Aqueous Solution and with Nucleic Acid Moieties For a Polarizable Force Field Based on the Classical Drude Oscillator Model
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October 2016 |
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A Polarizable Cationic Dummy Metal Ion Model
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June 2022 |
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Extending the Nonbonded Cationic Dummy Model to Account for Ion-Induced Dipole Interactions
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October 2017 |
Charge Model 5: An Extension of Hirshfeld Population Analysis for the Accurate Description of Molecular Interactions in Gaseous and Condensed Phases
- Marenich, Aleksandr V.; Jerome, Steven V.; Cramer, Christopher J.
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Journal of Chemical Theory and Computation, Vol. 8, Issue 2, p. 527-541
https://doi.org/10.1021/ct200866d
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February 2012 |
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Revised AMBER Parameters for Bioorganic Phosphates
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October 2012 |
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Rational Design of Particle Mesh Ewald Compatible Lennard-Jones Parameters for +2 Metal Cations in Explicit Solvent
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May 2013 |
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Taking into Account the Ion-Induced Dipole Interaction in the Nonbonded Model of Ions
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November 2013 |
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Systematic Parameterization of Monovalent Ions Employing the Nonbonded Model
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March 2015 |
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Self-Consistent Reaction Field Model for Aqueous and Nonaqueous Solutions Based on Accurate Polarized Partial Charges
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October 2007 |
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Solubility of magnesium hydrogen phosphate trihydrate and ion-pair formation in the system magnesium hydroxide-phosphoric acid-water at 25.degree.C
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June 1984 |
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Complexes in calcium phosphate solutions
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January 1968 |
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Influence of the Dynamic Positions of Cations on the Structure of the DNA Minor Groove: Sequence-Dependent Effects
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August 2001 |
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Thermodynamics of Transition Metal Ion Binding to Proteins
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March 2020 |
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Simulating the Chelate Effect
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November 2018 |
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Parameterization of Highly Charged Metal Ions Using the 12-6-4 LJ-Type Nonbonded Model in Explicit Water
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August 2014 |
Universal Solvation Model Based on Solute Electron Density and on a Continuum Model of the Solvent Defined by the Bulk Dielectric Constant and Atomic Surface Tensions
- Marenich, Aleksandr V.; Cramer, Christopher J.; Truhlar, Donald G.
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The Journal of Physical Chemistry B, Vol. 113, Issue 18, p. 6378-6396
https://doi.org/10.1021/jp810292n
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May 2009 |
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Metal complex interactions with DNA
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January 2015 |
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Thermodynamics of solvation of ions. Part 5.—Gibbs free energy of hydration at 298.15 K
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January 1991 |
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Comparison of simple potential functions for simulating liquid water
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July 1983 |
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A fast and high-quality charge model for the next generation general AMBER force field
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September 2020 |
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Extended magnesium and calcium force field parameters for accurate ion–nucleic acid interactions in biomolecular simulations
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May 2021 |
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Software for the frontiers of quantum chemistry: An overview of developments in the Q-Chem 5 package
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August 2021 |
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Why nature chose phosphates
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March 1987 |
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Unraveling Mg 2+ –RNA binding with atomistic molecular dynamics
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February 2017 |
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Chemical and Biochemical Basis of Cell-Bone Matrix Interaction in Health and Disease
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May 2009 |