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Title: Combinations of Single Chain Variable Fragments From HIV Broadly Neutralizing Antibodies Demonstrate High Potency and Breadth

Journal Article · · Frontiers in Immunology
 [1];  [2];  [3];  [3]
  1. National Institute for Communicable Diseases of the National Health Laboratory Service, Johannesburg (South Africa); Univ. of the Witwatersrand, Johannesburg (South Africa)
  2. Los Alamos National Laboratory (LANL), Los Alamos, NM (United States)
  3. National Institute for Communicable Diseases of the National Health Laboratory Service, Johannesburg (South Africa); Univ. of the Witwatersrand, Johannesburg (South Africa); Univ. of KwaZulu-Natal, Durban (South Africa)

Broadly neutralizing antibodies (bNAbs) are currently being assessed in clinical trials for their ability to prevent HIV infection. Single chain variable fragments (scFv) of bNAbs have advantages over full antibodies as their smaller size permits improved diffusion into mucosal tissues and facilitates vector-driven gene expression. We have previously shown that scFv of bNAbs individually retain significant breadth and potency. Here we tested combinations of five scFv derived from bNAbs CAP256-VRC26.25 (V2-apex), PGT121 (N332-supersite), 3BNC117 (CD4bs), 8ANC195 (gp120-gp41 interface) and 10E8v4 (MPER). Either two or three scFv were combined in equimolar amounts and tested in the TZM-bl neutralization assay against a multiclade panel of 17 viruses. Experimental IC50 and IC80 data were compared to predicted neutralization titers based on single scFv titers using the Loewe additive and the Bliss-Hill model. Like full-sized antibodies, combinations of scFv showed significantly improved potency and breadth compared to single scFv. Combinations of two or three scFv generally followed an independent action model for breadth and potency with no significant synergy or antagonism observed overall although some exceptions were noted. The Loewe model underestimated potency for some dual and triple combinations while the Bliss-Hill model was better at predicting IC80 titers of triple combinations. Given this, we used the Bliss-Hill model to predict the coverage of scFv against a 45-virus panel at concentrations that correlated with protection in the AMP trials. Using IC80 titers and concentrations of 1μg/mL, there was 93% coverage for one dual scFv combination (3BNC117+10E8v4), and 96% coverage for two of the triple combinations (CAP256.25+3BNC117+10E8v4 and PGT121+3BNC117+10E8v4). Combinations of scFv, therefore, show significantly improved breadth and potency over individual scFv and given their size advantage, have potential for use in passive immunization.

Research Organization:
Los Alamos National Laboratory (LANL), Los Alamos, NM (United States)
Sponsoring Organization:
USDOE
Grant/Contract Number:
89233218CNA000001
OSTI ID:
2470544
Journal Information:
Frontiers in Immunology, Journal Name: Frontiers in Immunology Vol. 12; ISSN 1664-3224
Publisher:
Frontiers Research FoundationCopyright Statement
Country of Publication:
United States
Language:
English

References (71)

MOESM1 of Engineering and characterising a novel, highly potent bispecific antibody iMab-CAP256 that targets HIV-1 image January 2019
MOESM2 of Engineering and characterising a novel, highly potent bispecific antibody iMab-CAP256 that targets HIV-1 image January 2019
Analysis of drug combinations: current methodological landscape journal May 2015
Developmental dyscalculia: a dysconnection syndrome? journal June 2013
Broadly Neutralizing Antibodies as Treatment: Effects on Virus and Immune System journal March 2017
Subtype C ALVAC-HIV and bivalent subtype C gp120/MF59 HIV-1 vaccine in low-risk, HIV-uninfected, South African adults: a phase 1/2 trial journal July 2018
Safety and efficacy of VRC01 broadly neutralising antibodies in adults with acutely treated HIV (RV397): a phase 2, randomised, double-blind, placebo-controlled trial journal May 2019
Synergistic inhibition of cell-to-cell HIV-1 infection by combinations of single chain variable fragments and fusion inhibitors journal December 2019
Engineered Bispecific Antibodies with Exquisite HIV-1-Neutralizing Activity journal June 2016
Quantification of the Impact of the HIV-1-Glycan Shield on Antibody Elicitation journal April 2017
Structural Basis for Broad HIV-1 Neutralization by the MPER-Specific Human Broadly Neutralizing Antibody LN01 journal November 2019
Pharmacokinetics and predicted neutralisation coverage of VRC01 in HIV-uninfected participants of the Antibody Mediated Prevention (AMP) trials journal February 2021
Adeno-Associated Virus Delivery of Anti-HIV Monoclonal Antibodies Can Drive Long-Term Virologic Suppression journal March 2019
Development and implementation of an international proficiency testing program for a neutralizing antibody assay for HIV-1 in TZM-bl cells journal January 2012
Optimization and validation of the TZM-bl assay for standardized assessments of neutralizing antibodies against HIV-1 journal July 2014
Neuronally expressed anti-tau scFv prevents tauopathy-induced phenotypes in Drosophila models journal April 2020
AAV-Mediated Expression of Broadly Neutralizing and Vaccine-like Antibodies Targeting the HIV-1 Envelope V2 Region journal September 2019
In vitro and in vivo evaluation of a single chain antibody fragment generated in planta with potent rabies neutralisation activity journal August 2019
Site-Specific Modification of Single-Chain Antibody Fragments for Bioconjugation and Vascular Immunotargeting journal December 2017
Effect of Genome Size on AAV Vector Packaging journal January 2010
Adeno-associated Virus–mediated Delivery of a Recombinant Single-chain Antibody Against Misfolded Superoxide Dismutase for Treatment of Amyotrophic Lateral Sclerosis journal March 2014
Developmental pathway for potent V1V2-directed HIV-neutralizing antibodies journal March 2014
Targeted DNA demethylation in vivo using dCas9–peptide repeat and scFv–TET1 catalytic domain fusions journal August 2016
Targeted delivery of a PD-1-blocking scFv by CAR-T cells enhances anti-tumor efficacy in vivo journal October 2018
Improvement of antibody functionality by structure-guided paratope engraftment journal February 2019
Systematic comparison of 2A peptides for cloning multi-genes in a polycistronic vector journal May 2017
Structural basis for broad neutralization of HIV-1 through the molecular recognition of 10E8 helical epitope at the membrane interface journal December 2016
Vaccination with ALVAC and AIDSVAX to Prevent HIV-1 Infection in Thailand journal December 2009
Two Randomized Trials of Neutralizing Antibodies to Prevent HIV-1 Acquisition journal March 2021
Topological analysis of the gp41 MPER on lipid bilayers relevant to the metastable HIV-1 envelope prefusion state journal October 2019
Structure of the membrane proximal external region of HIV-1 envelope glycoprotein journal September 2018
Pharmacokinetic properties of IgG and various Fc fusion proteins in mice journal October 2015
The Thai Phase III HIV Type 1 Vaccine Trial (RV144) Regimen Induces Antibodies That Target Conserved Regions Within the V2 Loop of gp120 journal November 2012
Quantitative Analysis of the Packaging Capacity of Recombinant Adeno-Associated Virus journal November 1996
Half-life extension of a single-chain diabody by fusion to domain B of staphylococcal protein A journal January 2012
Distinct HIV-1 Neutralization Potency Profiles of Ibalizumab-Based Bispecific Antibodies journal December 2016
Feasibility and Successful Enrollment in a Proof-of-Concept HIV Prevention Trial of VRC01, a Broadly Neutralizing HIV-1 Monoclonal Antibody journal May 2021
A Phase 2b Study to Evaluate the Safety and Efficacy of VRC01 Broadly Neutralizing Monoclonal Antibody in Reducing Acquisition of HIV-1 Infection in Women in Sub-Saharan Africa: Baseline Findings journal May 2021
Antibody gene transfer with adeno-associated viral vectors as a method for HIV prevention journal January 2017
Antibodies in HIV-1 Vaccine Development and Therapy journal September 2013
Protection against a mixed SHIV challenge by a broadly neutralizing antibody cocktail journal September 2017
The Neutralization Breadth of HIV-1 Develops Incrementally over Four Years and Is Associated with CD4+ T Cell Decline and High Viral Load during Acute Infection journal March 2011
Neutralization Breadth and Potency of Single-Chain Variable Fragments Derived from Broadly Neutralizing Antibodies Targeting Multiple Epitopes on the HIV-1 Envelope journal October 2019
New Member of the V1V2-Directed CAP256-VRC26 Lineage That Shows Increased Breadth and Exceptional Potency journal October 2015
Neutralizing Activity of Broadly Neutralizing Anti-HIV-1 Antibodies against Clade B Clinical Isolates Produced in Peripheral Blood Mononuclear Cells journal March 2018
Improving Neutralization Potency and Breadth by Combining Broadly Reactive HIV-1 Antibodies Targeting Major Neutralization Epitopes journal December 2014
Multiple Pathways of Escape from HIV Broadly Cross-Neutralizing V2-Dependent Antibodies journal February 2013
Single-Chain Fv-Based Anti-HIV Proteins: Potential and Limitations journal October 2011
Antibody Protects Macaques against Vaginal Challenge with a Pathogenic R5 Simian/Human Immunodeficiency Virus at Serum Levels Giving Complete Neutralization In Vitro journal September 2001
Targeting the HIV-1 Spike and Coreceptor with Bi- and Trispecific Antibodies for Single-Component Broad Inhibition of Entry journal September 2018
Broadly Neutralizing Human Immunodeficiency Virus Type 1 Antibody Gene Transfer Protects Nonhuman Primates from Mucosal Simian-Human Immunodeficiency Virus Infection journal June 2015
Neutralizing Activity of Broadly Neutralizing Anti-HIV-1 Antibodies against Primary African Isolates journal February 2021
Recommendations for the Design and Use of Standard Virus Panels To Assess Neutralizing Antibody Responses Elicited by Candidate Human Immunodeficiency Virus Type 1 Vaccines journal July 2005
A Bispecific Antibody That Simultaneously Recognizes the V2- and V3-Glycan Epitopes of the HIV-1 Envelope Glycoprotein Is Broader and More Potent than Its Parental Antibodies journal January 2020
Assessing the safety and pharmacokinetics of the anti-HIV monoclonal antibody CAP256V2LS alone and in combination with VRC07-523LS and PGT121 in South African women: study protocol for the first-in-human CAPRISA 012B phase I clinical trial journal November 2020
Broadly Neutralizing Antibodies to HIV and Their Role in Vaccine Design journal May 2016
Broadly Neutralizing Antibodies for HIV Prevention journal January 2020
Adeno-associated virus gene delivery of broadly neutralizing antibodies as prevention and therapy against HIV-1 journal October 2018
Engineering and characterising a novel, highly potent bispecific antibody iMab-CAP256 that targets HIV-1 journal November 2019
Antibody to gp41 MPER Alters Functional Properties of HIV-1 Env without Complete Neutralization journal July 2014
Self-Complementary Adeno-Associated Virus Vectors Improve Transduction Efficiency of Corneal Endothelial Cells journal March 2016
Development and testing of AAV-delivered single-chain variable fragments for the treatment of methamphetamine abuse journal June 2018
Introduction of the YTE mutation into the non-immunogenic HIV bnAb PGT121 induces anti-drug antibodies in macaques journal February 2019
Optimal Combinations of Broadly Neutralizing Antibodies for Prevention and Treatment of HIV-1 Clade C Infection journal March 2016
Potential of conventional & bispecific broadly neutralizing antibodies for prevention of HIV-1 subtype A, C & D infections journal March 2018
Protein Identification and Analysis Tools on the ExPASy Server book January 2005
Self-complementary adeno-associated viral vectors for gene therapy of hemophilia B: progress and challenges journal October 2011
CD4-Binding Site Directed Cross-Neutralizing scFv Monoclonals from HIV-1 Subtype C Infected Indian Children journal November 2017
In Vivo Applications of Single Chain Fv (Variable Domain) (scFv) Fragments journal April 2013
Recombinant Protein Expression for Structural Biology in HEK 293F Suspension Cells: A Novel and Accessible Approach journal October 2014
Engineering and characterising a novel, highly potent bispecific antibody iMab-CAP256 that targets HIV-1 collection January 2019