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Title: Cryptosporulation in Kurthia spp. forces a rethinking of asporogenesis in Firmicutes

Journal Article · · Environmental Microbiology
 [1];  [2];  [3];  [1];  [4];  [5];  [6];  [7];  [7];  [8];  [9];  [10];  [7];  [5];  [11];  [7];  [4]; ORCiD logo [1]
  1. University of Neuchatel (Switzerland)
  2. University of Neuchatel (Switzerland); Open University, Milton Keynes (United Kingdom)
  3. University of Neuchatel (Switzerland); Swiss Institute of Bioformatics, Lausanne (Switzerland)
  4. University of Geneva (Switzerland)
  5. Institut Pasteur, Paris (France)
  6. Paul Scherrer Institute (PSI), Villigen (Switzerland)
  7. University of Bern (Switzerland)
  8. Justus‐Liebig‐University, Giessen (Germany)
  9. Los Alamos National Laboratory (LANL), Los Alamos, NM (United States)
  10. Paul Scherrer Institute (PSI), Villigen (Switzerland); Biozentrum University of Basel (Switzerland); Leiden University (Netherlands)
  11. University of British Columbia, Vancouver, BC (Canada)

Endosporulation is a complex morphophysiological process resulting in a more resistant cellular structure that is produced within the mother cell and is called endospore. Endosporulation evolved in the common ancestor of Firmicutes, but it is lost in descendant lineages classified as asporogenic. While Kurthia spp. is considered to comprise only asporogenic species, we show here that strain 11kri321, which was isolated from an oligotrophic geothermal reservoir, produces phase-bright spore-like structures. Phylogenomics of strain 11kri321 and other Kurthia strains reveals little similarity to genetic determinants of sporulation known from endosporulating Bacilli. However, morphological hallmarks of endosporulation were observed in two of the four Kurthia strains tested, resulting in spore-like structures (cryptospores). In contrast to classic endospores, these cryptospores did not protect against heat or UV damage and successive sub-culturing led to the loss of the cryptosporulating phenotype. Our findings imply that a cryptosporulation phenotype may have been prevalent and subsequently lost by laboratory culturing in other Firmicutes currently considered as asporogenic. Cryptosporulation might thus represent an ancestral but unstable and adaptive developmental state in Firmicutes that is under selection under harsh environmental conditions.

Research Organization:
Los Alamos National Laboratory (LANL), Los Alamos, NM (United States)
Sponsoring Organization:
Federal Ministry of Education and Research (BMBF); USDOE
Grant/Contract Number:
89233218CNA000001
OSTI ID:
2470471
Journal Information:
Environmental Microbiology, Journal Name: Environmental Microbiology Journal Issue: 12 Vol. 24; ISSN 1462-2912
Publisher:
WileyCopyright Statement
Country of Publication:
United States
Language:
English

References (71)

Bacterial diversity in different regions of gastrointestinal tract of Giant African Snail (Achatina fulica) journal October 2012
Cloning, DNA Sequence, Functional Analysis and Transcriptional Regulation of the Genes Encoding Dipicolinic Acid Synthetase Required for Sporulation in Bacillus subtilis journal July 1993
SpoIIAA Governs the Release of the Cell-type Specific Transcription Factor σFFrom its Anti-sigma Factor SpoIIAB journal July 1996
Overview: development in bacteria: spore formation in Bacillus subtilis journal March 2002
Sporulation genes in members of the low G+C Gram-type-positive phylogenetic branch (Firmicutes) journal August 2004
Profiling of dynamic changes in the microbial community during the soy sauce fermentation process journal September 2013
Bacterial Species Diversity in Cigarettes Linked to an Investigation of Severe Pneumonitis in U.S. Military Personnel Deployed in Operation Iraqi Freedom journal May 2005
A general method applicable to the search for similarities in the amino acid sequence of two proteins journal March 1970
Basic local alignment search tool journal October 1990
EMBOSS: The European Molecular Biology Open Software Suite journal June 2000
A numerical taxonomic study of the genus Kurthia with a revised description of Kurthia zopfii and a description of Kurthia gibsonii sp. nov. journal April 1983
Control of sporulation initiation in Bacillus subtilis journal December 2000
Isolation and characterization of a novel cinosulfuron degrading Kurthia sp. from a methanogenic microbial consortium journal November 2013
Forespore Engulfment Mediated by a Ratchet-Like Mechanism journal September 2006
Peptidoglycan Remodeling and Conversion of an Inner Membrane into an Outer Membrane during Sporulation journal September 2011
Hierarchical Evolution of the Bacterial Sporulation Network journal September 2010
Analysis of bacterial diversity during the fermentation of inyu, a high-temperature fermented soy sauce, using nested PCR-denaturing gradient gel electrophoresis and the plate count method journal April 2013
Pyrosequencing analysis of microbial community and food-borne bacteria on restaurant cutting boards collected in Seri Kembangan, Malaysia, and their correlation with grades of food premises journal May 2015
Automated electron microscope tomography using robust prediction of specimen movements journal October 2005
Sporulation of Bacillus subtilis journal December 2004
I will survive: DNA protection in bacterial spores journal April 2007
Culturing of ‘unculturable’ human microbiota reveals novel taxa and extensive sporulation journal May 2016
Microbial seed banks: the ecological and evolutionary implications of dormancy journal January 2011
The dynamic spore journal March 2003
ACT: the Artemis comparison tool journal June 2005
PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating journal June 2009
An Ergatis-based prokaryotic genome annotation web server journal March 2010
The Newick utilities: high-throughput phylogenetic tree processing in the UNIX shell journal May 2010
A Bayesian Mixture Model for Across-Site Heterogeneities in the Amino-Acid Replacement Process journal June 2004
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform journal July 2002
The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis journal December 2004
Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy journal April 2011
The Pfam protein families database: towards a more sustainable future journal December 2015
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0 journal March 2010
The Bacillus Spore Coat journal November 2004
Kurthia huakuii sp. nov., isolated from biogas slurry, and emended description of the genus Kurthia journal February 2014
A cytoskeleton-like role for the bacterial cell wall during engulfment of the Bacillus subtilis forespore journal December 2002
Sporulation capability and amylosome conservation among diverse human colonic and rumen isolates of the keystone starch-degrader Ruminococcus bromii : Comparative genomics of journal December 2017
Correction for non-perpendicularity of beam and tilt axis in tomographic reconstructions with the IMOD package: NON-PERPENDICULARITY OF BEAM AND TILT AXIS journal April 2008
The spoIIIA operon of Bacillus subtilis defines a new temporal class of mother‐cell‐specific sporulation genes under the control of the σE form of RNA polymerase journal August 1991
Dual localization pathways for the engulfment proteins during Bacillus subtilis sporulation journal August 2007
Genomic determinants of sporulation in Bacilli and Clostridia : towards the minimal set of sporulation-specific genes : Distribution of sporulation genes in journal August 2012
Peptidoglycan transformations during Bacillus subtilis sporulation : Peptidoglycan remodelling journal March 2013
A Simplified Method of Staining Endospores journal February 1933
Philippi granitoid as a proxy for the Oligocene and Miocene crustal deformation in the Rhodope Massif (Eastern Macedonia, Greece) journal November 2009
New Culture Medium Containing Ionic Concentrations of Nutrients Similar to Concentrations Found in the Soil Solution † journal January 1991
Role of Dipicolinic Acid in Resistance and Stability of Spores of Bacillus subtilis with or without DNA-Protective α/β-Type Small Acid-Soluble Proteins journal June 2006
Properties of Aged Spores of Bacillus subtilis journal July 2019
Gene Conservation among Endospore-Forming Bacteria Reveals Additional Sporulation Genes in Bacillus subtilis journal November 2012
A Genomic Signature and the Identification of New Sporulation Genes journal February 2013
Characterization of Spores of Bacillus subtilis Which Lack Dipicolinic Acid journal October 2000
Genome-Wide Analysis of the Stationary-Phase Sigma Factor (Sigma-H) Regulon of Bacillus subtilis journal September 2002
Compartmentalization of Gene Expression during Bacillus subtilis Spore Formation journal June 2004
Decreased UV light resistance of spores of Bacillus subtilis strains deficient in pyrimidine dimer repair and small, acid-soluble spore proteins journal May 1988
Absence of Transient Elevated UV Resistance during Germination of Bacillus subtilis Spores Lacking Small, Acid-Soluble Spore Proteins α and β journal June 1988
Chemically Defined, Synthetic Media for Sporulation and for Germination and Growth of Bacillus Subtilis journal January 1964
Radiation Resistance of Soil Azotobacter journal May 1965
Sporulation in Bacteria: Beyond the Standard Model journal October 2014
Genome Diversity of Spore-Forming Firmicutes journal December 2013
Hidden Markov model speed heuristic and iterative HMM search procedure journal August 2010
BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments journal January 2010
BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons journal August 2011
Life in Hot Carbon Monoxide: The Complete Genome Sequence of Carboxydothermus hydrogenoformans Z-2901 journal January 2005
Live Cell Imaging of Germination and Outgrowth of Individual Bacillus subtilis Spores; the Effect of Heat Stress Quantitatively Analyzed with SporeTracker journal March 2013
Laboratory strains of Bacillus anthracis lose their ability to rapidly grow and sporulate compared to wildlife outbreak strains journal January 2020
The Roles of Mutation Accumulation and Selection in Loss of Sporulation in Experimental Populations of Bacillus subtilis journal October 2007
A Combination of Extreme Environmental Conditions Favor the Prevalence of Endospore-Forming Firmicutes journal November 2016
Robust Demarcation of the Family Caryophanaceae (Planococcaceae) and Its Different Genera Including Three Novel Genera Based on Phylogenomics and Highly Specific Molecular Signatures journal January 2020
Non-contiguous finished genome sequence and description of Kurthia massiliensis sp. nov. journal December 2012
Non-contiguous finished genome sequence and description of Kurthia senegalensis sp. nov. journal February 2014
Phylogenomic analysis supports the ancestral presence of LPS-outer membranes in the Firmicutes journal August 2016