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Title: The immune-evasive proline-283 substitution in influenza nucleoprotein increases aggregation propensity without altering the native structure

Journal Article · · Science Advances

Nucleoprotein (NP) is a key structural protein of influenza ribonucleoprotein complexes and is central to viral RNA packing and trafficking. NP also determines the sensitivity of influenza to myxovirus resistance protein 1 (MxA), an innate immunity factor that restricts influenza replication. A few critical MxA-resistant mutations have been identified in NP, including the highly conserved proline-283 substitution. This essential proline-283 substitution impairs influenza growth, a fitness defect that becomes particularly prominent at febrile temperature (39°C) when host chaperones are depleted. Here, we biophysically characterize proline-283 NP and serine-283 NP to test whether the fitness defect is caused by the proline-283 substitution introducing folding defects. We show that the proline-283 substitution changes the folding pathway of NP, making NP more aggregation prone during folding, but does not alter the native structure of the protein. These findings suggest that influenza has evolved to hijack host chaperones to promote the folding of otherwise biophysically incompetent viral proteins that enable innate immune system escape.

Research Organization:
Argonne National Laboratory (ANL), Argonne, IL (United States). Advanced Photon Source (APS)
Sponsoring Organization:
USDOE Office of Science (SC), Basic Energy Sciences (BES). Scientific User Facilities (SUF)
Grant/Contract Number:
AC02-06CH11357
OSTI ID:
2470165
Journal Information:
Science Advances, Journal Name: Science Advances Journal Issue: 16 Vol. 10; ISSN 2375-2548
Publisher:
AAASCopyright Statement
Country of Publication:
United States
Language:
English

References (65)

Analysis of Protein Stability and Ligand Interactions by Thermal Shift Assay journal February 2015
Comparison of High-Throughput Biophysical Methods to Identify Stabilizing Excipients for a Model IgG2 Monoclonal Antibody: Conformational Stability and Kinetic Aggregation Measurements journal May 2012
Practical protocols for production of very high yields of recombinant proteins using Escherichia coli journal May 2009
Molecular insight into the specific interactions of the SARS‐Coronavirus‐2 nucleocapsid with RNA and host protein journal March 2023
Gradient-Tailored Water Suppression for 1H-15N HSQC Experiments Optimized to Retain Full Sensitivity journal April 1993
Water Suppression That Works. Excitation Sculpting Using Arbitrary Wave-Forms and Pulsed-Field Gradients journal February 1995
Sensitivity Enhancement in the TROSY Experiment journal September 1998
Sensitivity Improvement of Transverse Relaxation-Optimized Spectroscopy journal January 1999
NMRPipe: A multidimensional spectral processing system based on UNIX pipes journal November 1995
Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions journal November 1992
Aggregated Recombinant Human Interferon Beta Induces Antibodies but No Memory in Immune-Tolerant Transgenic Mice journal May 2010
Size-Distribution Analysis of Macromolecules by Sedimentation Velocity Ultracentrifugation and Lamm Equation Modeling journal March 2000
Oligomerization paths of the nucleoprotein of influenza A virus journal March 2012
Partially Folded Aggregation Intermediates of Human γD-, γC-, and γS-Crystallin Are Recognized and Bound by Human αB-Crystallin Chaperone journal August 2010
The Benefits of Cotranslational Assembly: A Structural Perspective journal October 2019
Heat shock protein 90AB1 and hyperthermia rescue infectivity of HIV with defective cores journal February 2013
Characterizing and Minimizing Aggregation and Particle Formation of Three Recombinant Fusion-Protein Bulk Antigens for Use in a Candidate Trivalent Rotavirus Vaccine journal January 2020
Label-Free Analysis of Protein Aggregation and Phase Behavior journal November 2019
Quantification of the Thermodynamically Linked Quaternary and Tertiary Structural Stabilities of Transthyretin and Its Disease-Associated Variants: The Relationship between Stability and Amyloidosis journal July 2008
Characterizing the Altered Cellular Proteome Induced by the Stress-Independent Activation of Heat Shock Factor 1 journal April 2014
Broadly Applicable Methodology for the Rapid and Dosable Small Molecule-Mediated Regulation of Transcription Factors in Human Cells journal May 2013
Single Scan, Sensitivity- and Gradient-Enhanced TROSY for Multidimensional NMR Experiments journal October 1998
The mechanism by which influenza A virus nucleoprotein forms oligomers and binds RNA journal December 2006
Identification of influenza A nucleoprotein as an antiviral target journal May 2010
The 'Arctic' APP mutation (E693G) causes Alzheimer's disease by enhanced Aβ protofibril formation journal August 2001
At the centre: influenza A virus ribonucleoproteins journal November 2014
Hsp90 shapes protein and RNA evolution to balance trade-offs between protein stability and aggregation journal May 2018
Archival influenza virus genomes from Europe reveal genomic variability during the 1918 pandemic journal May 2022
The structural basis for HIV-1 Vif antagonism of human APOBEC3G journal February 2023
Influenza A viruses escape from MxA restriction at the expense of efficient nuclear vRNP import journal March 2016
Transcription antitermination during influenza viral template RNA synthesis requires the nucleocapsid protein and the absence of a 5' capped end. journal September 1986
Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution journal November 1997
Nuclear Import of Influenza Virus RNA Can Be Mediated by Viral Nucleoprotein and Transport Factors Required for Protein Import journal September 1995
Impaired Infectivity of Ritonavir-resistant HIV Is Rescued by Heat Shock Protein 90AB1 journal July 2011
Dialysis-related amyloidosis associated with a novel β2-microglobulin variant journal September 2020
In vivo evasion of MxA by avian influenza viruses requires human signature in the viral nucleoprotein journal April 2017
The Interferon-Induced Mx Protein of Chickens Lacks Antiviral Activity journal January 1995
NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy journal December 2014
Structure of the influenza virus A H5N1 nucleoprotein: implications for RNA binding, oligomerization, and vaccine design journal July 2008
Epistasis and pleiotropy shape biophysical protein subspaces associated with drug resistance journal November 2023
Phaser crystallographic software journal July 2007
Integration, scaling, space-group assignment and post-refinement journal January 2010
PHENIX: a comprehensive Python-based system for macromolecular structure solution journal January 2010
Features and development of Coot journal March 2010
Structure of an H3N2 influenza virus nucleoprotein journal June 2021
Kinetic and structural comparison of a protein’s cotranslational folding and refolding pathways journal May 2018
The Structure of Native Influenza Virion Ribonucleoproteins journal November 2012
Monitoring Drug Target Engagement in Cells and Tissues Using the Cellular Thermal Shift Assay journal July 2013
The Viral Nucleoprotein Determines Mx Sensitivity of Influenza A Viruses journal August 2011
Interferon-Inducible Protein Mx1 Inhibits Influenza Virus by Interfering with Functional Viral Ribonucleoprotein Complex Assembly journal September 2012
The Human Interferon-Induced MxA Protein Inhibits Early Stages of Influenza A Virus Infection by Retaining the Incoming Viral Genome in the Cytoplasm journal December 2013
Modulation of Nuclear Localization of the Influenza Virus Nucleoprotein through Interaction with Actin Filaments journal March 1999
Structure of the Ribonucleoprotein of Influenza Virus journal January 1972
Chemical Biology Framework to Illuminate Proteostasis journal June 2020
Viral Evolution Shaped by Host Proteostasis Networks journal September 2023
Destabilized adaptive influenza variants critical for innate immune system escape are potentiated by host chaperones journal September 2018
The endoplasmic reticulum proteostasis network profoundly shapes the protein sequence space accessible to HIV envelope journal February 2022
Proline: The Distribution, Frequency, Positioning, and Common Functional Roles of Proline and Polyproline Sequences in the Human Proteome journal January 2013
Monomeric Nucleoprotein of Influenza A Virus journal March 2013
Pandemic Influenza A Viruses Escape from Restriction by Human MxA through Adaptive Mutations in the Nucleoprotein journal March 2013
Deep mutational scanning identifies sites in influenza nucleoprotein that affect viral inhibition by MxA journal March 2017
Structure of the MxA stalk elucidates the assembly of ring-like units of an antiviral module journal July 2010
Stability-mediated epistasis constrains the evolution of an influenza protein journal May 2013
Host proteostasis modulates influenza evolution journal September 2017
Enhanced ER proteostasis and temperature differentially impact the mutational tolerance of influenza hemagglutinin journal September 2018