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Free energy calculation methods: A theoretical and empirical comparison of numerical errors and a new method qualitative estimates of free energy changes
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May 1997 |
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THE weighted histogram analysis method for free-energy calculations on biomolecules. I. The method
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Structure of a liquid-vapor interface
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September 1977 |
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Macroscopic equation of motion in inhomogeneous media: A microscopic treatment
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Guidelines for the analysis of free energy calculations
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March 2015 |
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Fluctuation–Dissipation Relation for Systems with Spatially Varying Friction
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July 2014 |
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Comments on P3M, FMM, and the Ewald method for large periodic Coulombic systems
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June 1996 |
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Global optimization of statistical functions with simulated annealing
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January 1994 |
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Brownian walker in a confined geometry leading to a space-dependent diffusion coefficient
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Transfer coefficients for the liquid–vapor interface of a two-component mixture
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October 2011 |
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A polarizable model of water for molecular dynamics simulations of biomolecules
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January 2006 |
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A molecular dynamics simulation study of surface effects on gas permeation in free-standing polyimide membranes
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September 2006 |
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An Empirical Polarizable Force Field Based on the Classical Drude Oscillator Model: Development History and Recent Applications
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January 2016 |
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Simulation-Based Approaches for Determining Membrane Permeability of Small Compounds
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March 2016 |
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Position-Dependent Diffusion from Biased Simulations and Markov State Model Analysis
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March 2021 |
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Symmetrized Drude Oscillator Force Fields Improve Numerical Performance of Polarizable Molecular Dynamics
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May 2023 |
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Generalized Langevin Methods for Calculating Transmembrane Diffusivity
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October 2016 |
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Coupled Interfacial and Bulk Kinetics Govern the Timescales of Multiphase Ozonolysis Reactions
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July 2022 |
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A Kinetic Model for Predicting Trace Gas Uptake and Reaction
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September 2022 |
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Multiscale Modeling of Human Skin Oil-Induced Indoor Air Chemistry: Combining Kinetic Models and Molecular Dynamics
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April 2020 |
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Mass Transfer through Vapor–Liquid Interfaces Studied by Non-Stationary Molecular Dynamics Simulations
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March 2023 |
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Robust Estimation of Position-Dependent Anisotropic Diffusivity Tensors from Stochastic Trajectories
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June 2023 |
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Peptide Isomerization is Suppressed at the Air–Water Interface
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January 2022 |
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Intrinsic Interface Adsorption Drives Selectivity in Atomically Smooth Nanofluidic Channels
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May 2023 |
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Iodine in the Marine Boundary Layer
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December 2003 |
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Mass Accommodation and Chemical Reactions at Gas−Liquid Interfaces
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April 2006 |
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Molecular Simulations of the Transport of Molecules across the Liquid/Vapor Interface of Water
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April 2006 |
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Specific Ion Effects at the Air/Water Interface
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April 2006 |
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Atmospheric Chemistry of Iodine
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October 2011 |
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Chemical Reactions and Solvation at Liquid Interfaces: A Microscopic Perspective
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January 1996 |
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Calculating Position-Dependent Diffusivity in Biased Molecular Dynamics Simulations
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December 2012 |
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Solubility of ozone in aqueous solutions of 0-0.6 M ionic strength at 5-30.degree.C
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March 1983 |
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Adsorption and Reaction of Trace Gas-Phase Organic Compounds on Atmospheric Water Film Surfaces: A Critical Review
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February 2010 |
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Simulation of water transport through a lipid membrane
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April 1994 |
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Conformational Flexibility of o-Phosphorylcholine and o-Phosphorylethanolamine: A Molecular Dynamics Study of Solvation Effects
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June 1994 |
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Computational Study of Ion Binding to the Liquid Interface of Water †
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October 2002 |
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On the Calculation of Diffusion Coefficients in Confined Fluids and Interfaces with an Application to the Liquid−Vapor Interface of Water †
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May 2004 |
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Molecular Dynamics Study of Hydration in Ethanol−Water Mixtures Using a Polarizable Force Field †
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April 2005 |
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Adsorption of Atmospherically Relevant Gases at the Air/Water Interface: Free Energy Profiles of Aqueous Solvation of N 2 , O 2 , O 3 , OH, H 2 O, HO 2 , and H 2 O 2
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December 2004 |
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Uptake and Collision Dynamics of Gas Phase Ozone at Unsaturated Organic Interfaces
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June 2004 |
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Molecular Dynamics Simulations of Atmospheric Oxidants at the Air−Water Interface: Solvation and Accommodation of OH and O3
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August 2005 |
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Molecular Simulation Study of the Adsorption of Naphthalene and Ozone on Atmospheric Air/Ice Interfaces
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July 2011 |
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Mass Accommodation of Water: Bridging the Gap Between Molecular Dynamics Simulations and Kinetic Condensation Models
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January 2013 |
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Permeation Process of Small Molecules across Lipid Membranes Studied by Molecular Dynamics Simulations
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January 1996 |
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Surface-Specific Reactions on Liquids
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June 1997 |
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Recent Advances in Polarizable Force Fields for Macromolecules: Microsecond Simulations of Proteins Using the Classical Drude Oscillator Model
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September 2014 |
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Iodine Chemistry and its Role in Halogen Activation and Ozone Loss in the Marine Boundary Layer: A Model Study
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March 1999 |
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A chemical kinetic model for reactive transformations of aerosol particles: REACTIVE TRANSFORMATION OF AEROSOL PARTICLES
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October 2002 |
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Atmosphere‐ocean ozone exchange: A global modeling study of biogeochemical, atmospheric, and waterside turbulence dependencies
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November 2009 |
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Atmospheric iodine levels influenced by sea surface emissions of inorganic iodine
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January 2013 |
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High levels of nitryl chloride in the polluted subtropical marine boundary layer
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April 2008 |
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A surface-stabilized ozonide triggers bromide oxidation at the aqueous solution-vapour interface
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September 2017 |
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Uptake of N2O5 by aqueous aerosol unveiled using chemically accurate many-body potentials
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March 2022 |
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Effects of reversible adsorption and Langmuir–Hinshelwood surface reactions on gas uptake by atmospheric particles
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January 2003 |
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Quantifying trace gas uptake to tropospheric aerosol: recent advances and remaining challenges
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January 2012 |
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N 2 O 5 at water surfaces: binding forces, charge separation, energy accommodation and atmospheric implications
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January 2018 |
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A kinetic model for ozone uptake by solutions and aqueous particles containing I−and Br−, including seawater and sea-salt aerosol
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January 2019 |
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Iodide oxidation by ozone at the surface of aqueous microdroplets
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January 2024 |
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Symplectic quaternion scheme for biophysical molecular dynamics
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May 2002 |
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Modeling induced polarization with classical Drude oscillators: Theory and molecular dynamics simulation algorithm
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August 2003 |
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Structure and thermodynamics of the liquid–vapor interface
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October 1977 |
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Correlation functions in the capillary wave model of the liquid–vapor interface
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January 1985 |
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Theoretical study of ion solvation at the water liquid–vapor interface
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September 1991 |
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Recovering position-dependent diffusion from biased molecular dynamics simulations
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February 2014 |
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Rate constants in spatially inhomogeneous systems
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May 2019 |
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Optimal estimates of self-diffusion coefficients from molecular dynamics simulations
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July 2020 |
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Sampling mobility profiles of confined fluids with equilibrium molecular dynamics simulations
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July 2020 |
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On the fluctuations that drive small ions toward, and away from, interfaces between polar liquids and their vapors
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August 2009 |
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Elucidating the mechanism of selective ion adsorption to the liquid water surface
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January 2012 |
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On the mechanisms of ion adsorption to aqueous interfaces: air-water vs. oil-water
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October 2022 |
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The nature of the liquid-vapour interface and other topics in the statistical mechanics of non-uniform, classical fluids
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April 1979 |
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Mass transfer through vapour–liquid interfaces: a molecular dynamics simulation study
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August 2020 |
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Molecular simulations of interfacial systems: challenges, applications and future perspectives
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October 2021 |
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Position-dependent diffusion coefficients and free energies from Bayesian analysis of equilibrium and replica molecular dynamics simulations
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January 2005 |
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Exact solution of a Brownian inchworm model for self-propulsion
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November 2008 |
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Nonequilibrium Statistical Mechanics
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April 2001 |
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Statistical mechanics of active Ornstein-Uhlenbeck particles
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March 2021 |
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Active noise-driven particles under space-dependent friction in one dimension
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May 2021 |
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Generalized Langevin equations: Anomalous diffusion and probability distributions
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June 1996 |
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Residence time distribution of a Brownian particle
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April 1998 |
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Survival and residence times in disordered chains with bias
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August 2002 |
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State-dependent diffusion: Thermodynamic consistency and its path integral formulation
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July 2007 |
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Molecular dynamics and analytical Langevin equation approach for the self-diffusion constant of an anisotropic fluid
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December 2009 |
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Langevin dynamics in inhomogeneous media: Re-examining the Itô-Stratonovich dilemma
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January 2014 |
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Isothermal Langevin dynamics in systems with power-law spatially dependent friction
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July 2016 |
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Anomalously low dielectric constant of confined water
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June 2018 |
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Reactive uptake of N 2 O 5 by atmospheric aerosol is dominated by interfacial processes
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February 2021 |
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Ozone solubility in concentrated aqueous solutions of salts
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November 2007 |
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A Singular Perturbation Approach to Non-Markovian Escape Rate Problems
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April 1986 |
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ItÔ Versus Stratonovich: 30 Years Later
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March 2012 |
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Environmental Chemistry at Vapor/Water Interfaces: Insights from Vibrational Sum Frequency Generation Spectroscopy
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May 2012 |
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Water Interfaces, Solvation, and Spectroscopy
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April 2013 |
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Molecular Insights into Chemical Reactions at Aqueous Aerosol Interfaces
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June 2024 |
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Gas-Phase and Heterogeneous Chemical Kinetics of the Troposphere and Stratosphere
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October 1996 |
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Simulated Annealing
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Optim: A mathematical optimization package for Julia
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Kinetics of Trace Gas Uptake by Liquid Surfaces
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An overview of current issues in the uptake of atmospheric trace gases by aerosols and clouds
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Kinetic model framework for aerosol and cloud surface chemistry and gas-particle interactions – Part 1: General equations, parameters, and terminology
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