Century-long timelines of herbarium genomes predict plant stomatal response to climate change

Lang, Patricia L. M.; Erberich, Joel M.; Lopez, Lua; Weiß, Clemens L.; Amador, Gabriel; Fung, Hannah F.; Latorre, Sergio M.; Lasky, Jesse R.; Burbano, Hernán A.; Expósito-Alonso, Moisés; Bergmann, Dominique C.

doi:10.1038/s41559-024-02481-x

Title: Century-long timelines of herbarium genomes predict plant stomatal response to climate change

Journal Article · 08 August 2024 · Nature Ecology and Evolution

DOI: https://doi.org/10.1038/s41559-024-02481-x · OSTI ID:2427423

; Erberich, Joel M.;

; Weiß, Clemens L.; Amador, Gabriel;

;

; Burbano, Hernán A.; Expósito-Alonso, Moisés;

Abstract Dissecting plant responses to the environment is key to understanding whether and how plants adapt to anthropogenic climate change. Stomata, plants’ pores for gas exchange, are expected to decrease in density following increased CO ₂ concentrations, a trend already observed in multiple plant species. However, it is unclear whether such responses are based on genetic changes and evolutionary adaptation. Here we make use of extensive knowledge of 43 genes in the stomatal development pathway and newly generated genome information of 191 Arabidopsis thaliana historical herbarium specimens collected over 193 years to directly link genetic variation with climate change. While we find that the essential transcription factors SPCH, MUTE and FAMA, central to stomatal development, are under strong evolutionary constraints, several regulators of stomatal development show signs of local adaptation in contemporary samples from different geographic regions. We then develop a functional score based on known effects of gene knock-out on stomatal development that recovers a classic pattern of stomatal density decrease over the past centuries, suggesting a genetic component contributing to this change. This approach combining historical genomics with functional experimental knowledge could allow further investigations of how different, even in historical samples unmeasurable, cellular plant phenotypes may have already responded to climate change through adaptive evolution.

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Sponsoring Organization:: USDOE

Grant/Contract Number:: SC0021286

OSTI ID:: 2427423

Journal Information:: Nature Ecology and Evolution, Journal Name: Nature Ecology and Evolution Journal Issue: 9 Vol. 8; ISSN 2397-334X

Publisher:: Nature Publishing GroupCopyright Statement

Country of Publication:: United Kingdom

Language:: English

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