DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Optimize Electron Beam Energy toward In Situ Imaging of Thick Frozen Bio-Samples with Nanometer Resolution Using MeV-STEM

Journal Article · · Nanomaterials
ORCiD logo [1];  [2]; ORCiD logo [1];  [1]
  1. Brookhaven National Laboratory (BNL), Upton, NY (United States). National Synchrotron Light Source II (NSLS-II)
  2. Brookhaven National Laboratory (BNL), Upton, NY (United States). Laboratory for BioMolecular Structure (LBMS)

To optimize electron energy for in situ imaging of large biological samples up to 10 μm in thickness with nanoscale resolutions, we implemented an analytical model based on elastic and inelastic characteristic angles. This model has been benchmarked by Monte Carlo simulations and can be used to predict the transverse beam size broadening as a function of electron energy while the probe beam traverses through the sample. As a result, the optimal choice of the electron beam energy can be realized. In addition, the impact of the dose-limited resolution was analysed. While the sample thickness is less than 10 μm, there exists an optimal electron beam energy below 10 MeV regarding a specific sample thickness. However, for samples thicker than 10 μm, the optimal beam energy is 10 MeV or higher depending on the sample thickness, and the ultimate resolution could become worse with the increase in the sample thickness. Moreover, a MeV-STEM column based on a two-stage lens system can be applied to reduce the beam size from one micron at aperture to one nanometre at the sample with the energy tuning range from 3 to 10 MeV. In conjunction with the state-of-the-art ultralow emittance electron source that we recently implemented, the maximum size of an electron beam when it traverses through an up to 10 μm thick bio-sample can be kept less than 10 nm . This is a critical step toward the in situ imaging of large, thick biological samples with nanometer resolution.

Research Organization:
Brookhaven National Laboratory (BNL), Upton, NY (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Basic Energy Sciences (BES). Scientific User Facilities (SUF); USDOE Laboratory Directed Research and Development (LDRD) Program
Grant/Contract Number:
SC0012704
OSTI ID:
2352189
Report Number(s):
BNL--225616-2024-JAAM
Journal Information:
Nanomaterials, Journal Name: Nanomaterials Journal Issue: 9 Vol. 14; ISSN 2079-4991
Publisher:
MDPICopyright Statement
Country of Publication:
United States
Language:
English

References (28)

Simulation and the Monte Carlo Method book April 1981
Isolation and preliminary characterisation of DNA-protein complexes from the mitochondria of Saccharomyces cerevisiae journal May 1981
Design of compact ultrafast microscopes for single- and multi-shot imaging with MeV electrons journal November 2018
A cryogenically cooled high voltage DC photoemission electron source journal August 2018
Cellular Electron Cryotomography: Toward Structural Biology In Situ journal June 2017
Relative merits and limiting factors for x-ray and electron microscopy of thick, hydrated organic materials journal January 2018
Choice of operating voltage for a transmission electron microscope journal October 2014
The potential and limitations of neutrons, electrons and X-rays for atomic resolution microscopy of unstained biological molecules journal May 1995
Electron microscopy for imaging organelles in plants and algae journal September 2021
Electron Nano-Imaging: Basics of Imaging and Diffraction for TEM and STEM book April 2017
Towards high-throughput in situ structural biology using electron cryotomography journal March 2021
Determination of Bacterial Cell Dry Mass by Transmission Electron Microscopy and Densitometric Image Analysis journal February 1998
Monte-Carlo techniques for radiotherapy applications I: introduction and overview of the different Monte-Carlo codes journal January 2023
Monte Carlo simulation of the energy loss of low-energy electrons in liquid water journal July 2003
Quantitative energy-filtered electron microscopy of biological molecules in ice journal October 1992
Cross sections for the interactions of 1 eV–100 MeV electrons in liquid water and application to Monte-Carlo simulation of HZE radiation tracks journal June 2009
Thermodynamic Data for Biochemistry and Biotechnology book January 1986
Cellular Imaging book December 2017
Electron tomography in plant cell biology journal November 2018
Monte Carlo Methods in Statistical Physics book February 1999
Advances in Nb 3 Sn superconducting radiofrequency cavities towards first practical accelerator applications journal January 2021
Monte Carlo Simulation of Electron Interactions in an MeV-STEM for Thick Frozen Biological Sample Imaging journal February 2024
X-Ray Microscopy and Spectromicroscopy book January 1998
Accessing radiation damage to biomolecules on the nanoscale by particle-scattering simulations journal April 2023
Intrinsic emittance reduction in transmission mode photocathodes journal March 2016
Towards Construction of a Novel Nanometer-Resolution MeV-STEM for Imaging Thick Frozen Biological Samples journal March 2024
The Monte Carlo Method journal September 1949
Cryo-scanning transmission electron tomography of vitrified cells journal February 2014