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Title: Time-resolved cryogenic electron tomography for the study of transient cellular processes

Journal Article · · Molecular Biology of the Cell
 [1];  [2];  [3];  [4];  [5];  [4];  [4];  [2];  [4];  [4];  [3];  [6];  [4]
  1. Stanford Univ., CA (United States); SLAC
  2. Stanford Univ., CA (United States)
  3. Cornell Univ., Ithaca, NY (United States)
  4. SLAC National Accelerator Laboratory (SLAC), Menlo Park, CA (United States)
  5. Department of Chemistry, New York University, New York, New York, USA
  6. Stanford Univ., CA (United States); SLAC National Accelerator Laboratory (SLAC), Menlo Park, CA (United States)

Cryogenic electron tomography (cryo-ET) is the highest resolution imaging technique applicable to the life sciences, enabling sub-nanometer visualization of specimens preserved in their near native states. The rapid plunge freezing process used to prepare samples lends itself to time-resolved studies, which researchers have pursued for in vitro samples for decades. Here, we focus on developing a freezing apparatus for time-resolved studies in situ. The device mixes cellular samples with solution-phase stimulants before spraying them directly onto an electron microscopy grid that is transiting into cryogenic liquid ethane. By varying the flow rates of cell and stimulant solutions within the device, we can control the reaction time from tens of milliseconds to over a second prior to freezing. In a proof-of-principle demonstration, the freezing method is applied to a model bacterium, Caulobacter crescentus, mixed with an acidic buffer. Through cryo-ET we resolved structural changes throughout the cell, including surface-layer protein dissolution, outer membrane deformation, and cytosolic rearrangement, all within 1.5 seconds of reaction time. This new approach, Time-Resolved cryo-ET (TR-cryo-ET), enhances the capabilities of cryo-ET by incorporating a sub-second temporal axis and enables the visualization of induced structural changes at the molecular, organelle, or cellular level.

Research Organization:
SLAC National Accelerator Laboratory (SLAC), Menlo Park, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Basic Energy Sciences (BES); USDOE Laboratory Directed Research and Development (LDRD) Program; National Institutes of Health (NIH); National Science Foundation (NSF)
Contributing Organization:
CryoEM & Bioimaging Research
Grant/Contract Number:
AC02-76SF00515
OSTI ID:
2349323
Journal Information:
Molecular Biology of the Cell, Journal Name: Molecular Biology of the Cell Journal Issue: 7 Vol. 35; ISSN 1059-1524
Publisher:
American Society for Cell BiologyCopyright Statement
Country of Publication:
United States
Language:
English

References (37)

The promise and the challenges of cryo‐electron tomography journal October 2020
Computer Visualization of Three-Dimensional Image Data Using IMOD journal January 1996
Cryo-Electron Tomography book January 2019
Analysis of transient structures by cryo-microscopy combined with rapid mixing of spray droplets journal December 1994
3D Correlative Cryo-Structured Illumination Fluorescence and Soft X-ray Microscopy Elucidates Reovirus Intracellular Release Pathway journal July 2020
Time resolution in cryo-EM using a PDMS-based microfluidic chip assembly and its application to the study of HflX-mediated ribosome recycling journal February 2024
Rapid melting and revitrification as an approach to microsecond time-resolved cryo-electron microscopy journal September 2021
In Situ Cryo-Electron Tomography: A Post-Reductionist Approach to Structural Biology journal January 2016
Implementation of a cryo-electron tomography tilt-scheme optimized for high resolution subtomogram averaging journal February 2017
Light-coupled cryo-plunger for time-resolved cryo-EM journal December 2020
Identification and demonstration of roGFP2 as an environmental sensor for cryogenic correlative light and electron microscopy journal September 2022
A Fast and Effective Microfluidic Spraying-Plunging Method for High-Resolution Single-Particle Cryo-EM journal April 2017
Characterizing Enzyme Reactions in Microcrystals for Effective Mix-and-Inject Experiments using X-ray Free-Electron Lasers journal September 2020
Microfluidic Mixing Injector Holder Enables Routine Structural Enzymology Measurements with Mix-and-Inject Serial Crystallography Using X-ray Free Electron Lasers journal May 2019
Electron Diffraction of 3D Molecular Crystals journal August 2022
Acetylcholine receptor channel imaged in the open state journal January 1995
Convolutional neural networks for automated annotation of cellular cryo-electron tomograms journal August 2017
Structure of the hexagonal surface layer on Caulobacter crescentus cells journal April 2017
Topologically-guided continuous protein crystallization controls bacterial surface layer self-assembly journal June 2019
Late steps in bacterial translation initiation visualized using time-resolved cryo-EM journal May 2019
Time-resolved cryo-EM using Spotiton journal August 2020
Publisher Correction: The cryo-EM method microcrystal electron diffraction (MicroED) journal March 2021
Mixing injector enables time-resolved crystallography with high hit rate at X-ray free electron lasers journal August 2016
Focused ion beam micromachining of eukaryotic cells for cryoelectron tomography journal March 2012
A bacterial surface layer protein exploits multistep crystallization for rapid self-assembly journal December 2019
Cryogenic single-molecule fluorescence annotations for electron tomography reveal in situ organization of key proteins in Caulobacter journal June 2020
Challenges and opportunities in cryo-EM single-particle analysis journal March 2019
Gas dynamic virtual nozzle for generation of microscopic droplet streams journal September 2008
Observation of substrate diffusion and ligand binding in enzyme crystals using high-repetition-rate mix-and-inject serial crystallography journal September 2021
Multiple large filament bundles observed in Caulobacter crescentus by electron cryotomography journal August 2006
Location and architecture of the Caulobacter crescentus chemoreceptor array journal July 2008
Single-particle cryo-EM—How did it get here and where will it go journal August 2018
BIOLOGICAL PROPERTIES AND CLASSIFICATION OF THE CAULOBACTER GROUP journal September 1964
Isolation and comparison of the paracrystalline surface layer proteins of freshwater caulobacters. journal March 1992
Cryogenic Electron Microscopy and Single-Particle Analysis journal June 2015
Cryogenic Super-Resolution Fluorescence and Electron Microscopy Correlated at the Nanoscale journal April 2021
Enzyme intermediates captured “on the fly” by mix-and-inject serial crystallography journal May 2018