Mechanically induced localisation of SECONDARY WALL INTERACTING bZIP is associated with thigmomorphogenic and secondary cell wall gene expression

Coomey, Joshua H.; MacKinnon, Kirk J. -M.; McCahill, Ian W.; Khahani, Bahman; Handakumbura, Pubudu P.; Trabucco, Gina M.; Mazzola, Jessica; Leblanc, Nicole A.; Kheam, Rithany; Hernandez-Romero, Miriam; Barry, Kerrie; Liu, Lifeng; Lee, Ji E.; Vogel, John P.; O’Malley, Ronan C.; Chambers, James J.; Hazen, Samuel P.

doi:10.1017/qpb.2024.5

Title: Mechanically induced localisation of SECONDARY WALL INTERACTING bZIP is associated with thigmomorphogenic and secondary cell wall gene expression

Journal Article · 02 May 2024 · Quantitative Plant Biology

DOI: https://doi.org/10.1017/qpb.2024.5 · OSTI ID:2345827

;

; McCahill, Ian W.;

;

; Trabucco, Gina M.; Mazzola, Jessica; Leblanc, Nicole A.; Kheam, Rithany; Hernandez-Romero, Miriam;

; Liu, Lifeng;

;

; O’Malley, Ronan C.;

;

Abstract Plant growth requires the integration of internal and external cues, perceived and transduced into a developmental programme of cell division, elongation and wall thickening. Mechanical forces contribute to this regulation, and thigmomorphogenesis typically includes reducing stem height, increasing stem diameter, and a canonical transcriptomic response. We present data on a bZIP transcription factor involved in this process in grasses. Brachypodium distachyon SECONDARY WALL INTERACTING bZIP (SWIZ) protein translocated into the nucleus following mechanostimulation. Classical touch-responsive genes were upregulated in B. distachyon roots following touch, including significant induction of the glycoside hydrolase 17 family, which may be unique to grass thigmomorphogenesis. SWIZ protein binding to an E-box variant in exons and introns was associated with immediate activation followed by repression of gene expression. SWIZ overexpression resulted in plants with reduced stem and root elongation. These data further define plant touch-responsive transcriptomics and physiology, offering insights into grass mechanotranduction dynamics.

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Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

Grant/Contract Number:: AC02-05CH11231; SC0006641

OSTI ID:: 2345827

Alternate ID(s):: OSTI ID: 2483897

Journal Information:: Quantitative Plant Biology, Journal Name: Quantitative Plant Biology Vol. 5; ISSN 2632-8828

Publisher:: Cambridge University Press (CUP)Copyright Statement

Country of Publication:: United Kingdom

Language:: English

References (90)

Mechanosensitive control of plant growth: bearing the load, sensing, transducing, and responding Moulia, Bruno; Coutand, Catherine; Julien, Jean-Louis Frontiers in Plant Science, Vol. 6 https://doi.org/10.3389/fpls.2015.00052	journal	February 2015
Perturbation of Brachypodium distachyon CELLULOSE SYNTHASE A4 or 7 results in abnormal cell walls Handakumbura, Pubudu P.; Matos, Dominick A.; Osmont, Karen S. BMC Plant Biology, Vol. 13, Issue 1 https://doi.org/10.1186/1471-2229-13-131	journal	January 2013
HISAT: a fast spliced aligner with low memory requirements Kim, Daehwan; Langmead, Ben; Salzberg, Steven L. Nature Methods, Vol. 12, Issue 4 https://doi.org/10.1038/nmeth.3317	journal	March 2015
In touch: plant responses to mechanical stimuli: Tansley review Braam, Janet New Phytologist, Vol. 165, Issue 2 https://doi.org/10.1111/j.1469-8137.2004.01263.x	journal	November 2004
Rain-, wind-, and touch-induced expression of calmodulin and calmodulin-related genes in Arabidopsis Braam, Janet; Davis, Ronald W. Cell, Vol. 60, Issue 3 https://doi.org/10.1016/0092-8674(90)90587-5	journal	February 1990
Feeling stretched or compressed? The multiple mechanosensitive responses of wood formation to bending Roignant, Jeanne; Badel, Éric; Leblanc-Fournier, Nathalie Annals of Botany, Vol. 121, Issue 6 https://doi.org/10.1093/aob/mcx211	journal	January 2018
Expression atlas and comparative coexpression network analyses reveal important genes involved in the formation of lignified cell wall in Brachypodium distachyon Sibout, Richard; Proost, Sebastian; Hansen, Bjoern Oest New Phytologist, Vol. 215, Issue 3 https://doi.org/10.1111/nph.14635	journal	June 2017
bZIP transcription factor RSG controls the feedback regulation ofNtGA20ox1via intracellular localization and epigenetic mechanism Fukazawa, Jutarou; Nakata, Masaru; Ito, Takeshi Plant Signaling & Behavior, Vol. 6, Issue 1 https://doi.org/10.4161/psb.6.1.14114	journal	January 2011
Annotation and comparative analysis of the glycoside hydrolase genes in Brachypodium distachyon Tyler, Ludmila; Bragg, Jennifer N.; Wu, Jiajie BMC Genomics, Vol. 11, Article No. 600 https://doi.org/10.1186/1471-2164-11-600	journal	January 2010
Modeling temporal and hormonal regulation of plant transcriptional response to wounding Moore, Bethany M.; Lee, Yun Sun; Wang, Peipei The Plant Cell, Vol. 34, Issue 2 https://doi.org/10.1093/plcell/koab287	journal	December 2021
Calcium signalling regulates the functions of the bZIP protein VIP1 in touch responses inArabidopsis thaliana Tsugama, Daisuke; Liu, Shenkui; Fujino, Kaien Annals of Botany, Vol. 122, Issue 7 https://doi.org/10.1093/aob/mcy125	journal	July 2018
Synthetic Plant Promoters Containing Defined Regulatory Elements Provide Novel Insights into Pathogen- and Wound-Induced Signaling Rushton, Paul J.; Reinstädler, Anja; Lipka, Volker The Plant Cell, Vol. 14, Issue 4 https://doi.org/10.1105/tpc.010412	journal	March 2002
Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape O’Malley, Ronan C.; Huang, Shao-shan Carol; Song, Liang Cell, Vol. 165, Issue 5 https://doi.org/10.1016/j.cell.2016.04.038	journal	May 2016
REPRESSION OF SHOOT GROWTH, a bZIP Transcriptional Activator, Regulates Cell Elongation by Controlling the Level of Gibberellins Fukazawa, Jutarou; Sakai, Tatsuya; Ishida, Sarahmi The Plant Cell, Vol. 12, Issue 6 https://doi.org/10.1105/tpc.12.6.901	journal	June 2000
Mechanical touch responses of Arabidopsis TCH1-3 mutant roots on inclined hard-agar surface Zha, Guodong; Wang, Bochu; Liu, Junyu International Agrophysics, Vol. 30, Issue 1 https://doi.org/10.1515/intag-2015-0065	journal	January 2016
A Novel Image-Analysis Toolbox Enabling Quantitative Analysis of Root System Architecture Lobet, Guillaume; Pagès, Loïc; Draye, Xavier Plant Physiology, Vol. 157, Issue 1 https://doi.org/10.1104/pp.111.179895	journal	July 2011
Thigmomorphogenesis – Control of plant growth by mechanical stimulation Börnke, Frederik; Rocksch, Thorsten Scientia Horticulturae, Vol. 234 https://doi.org/10.1016/j.scienta.2018.02.059	journal	April 2018
Analysis of Functions of VIP1 and Its Close Homologs in Osmosensory Responses of Arabidopsis thaliana Tsugama, Daisuke; Liu, Shenkui; Takano, Tetsuo PLoS ONE, Vol. 9, Issue 8 https://doi.org/10.1371/journal.pone.0103930	journal	August 2014
W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis Trifinopoulos, Jana; Nguyen, Lam-Tung; von Haeseler, Arndt Nucleic Acids Research, Vol. 44, Issue W1 https://doi.org/10.1093/nar/gkw256	journal	April 2016
Sorghum tiller bud growth is repressed by contact with the overlying leaf Liu, Ruixian; Finlayson, Scott A. Plant, Cell & Environment, Vol. 42, Issue 7 https://doi.org/10.1111/pce.13548	journal	April 2019
Roles for Arabidopsis CAMTA Transcription Factors in Cold-Regulated Gene Expression and Freezing Tolerance Doherty, Colleen J.; Van Buskirk, Heather A.; Myers, Susan J. The Plant Cell, Vol. 21, Issue 3 https://doi.org/10.1105/tpc.108.063958	journal	March 2009
Transcriptional Activation of Secondary Wall Biosynthesis by Rice and Maize NAC and MYB Transcription Factors Zhong, R.; Lee, C.; McCarthy, R. L. Plant and Cell Physiology, Vol. 52, Issue 10 https://doi.org/10.1093/pcp/pcr123	journal	September 2011
MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization Katoh, Kazutaka; Rozewicki, John; Yamada, Kazunori D. Briefings in Bioinformatics, Vol. 20, Issue 4 https://doi.org/10.1093/bib/bbx108	journal	September 2017
Regulation of secondary wall synthesis and cell death by NAC transcription factors in the monocot Brachypodium distachyon Valdivia, Elene R.; Herrera, María Teresa; Gianzo, Cristina Journal of Experimental Botany, Vol. 64, Issue 5 https://doi.org/10.1093/jxb/ers394	journal	February 2013
RF2a, a bZIP transcriptional activator of the phloem-specific rice tungro bacilliform virus promoter, functions in vascular development Yin, Y. The EMBO Journal, Vol. 16, Issue 17 https://doi.org/10.1093/emboj/16.17.5247	journal	September 1997
Evaluating Mechano-Transduction and Touch Responses in Plant Roots Swanson, Sarah J.; Barker, Richard; Ye, Yonggeng Methods in Molecular Biology https://doi.org/10.1007/978-1-4939-2697-8_12	book	January 2015
Autophosphorylation Affects Substrate-Binding Affinity of Tobacco Ca²⁺-Dependent Protein Kinase1 Ito, Takeshi; Ishida, Sarahmi; Oe, Shota Plant Physiology, Vol. 174, Issue 4 https://doi.org/10.1104/pp.17.00515	journal	June 2017
Thigmomorphogenesis: Calibration of the parameters of the sensory function in beans Jaffe, M. J.; Biro, R.; Bridle, K. Physiologia Plantarum, Vol. 49, Issue 4 https://doi.org/10.1111/j.1399-3054.1980.tb03326.x	journal	August 1980
SECONDARY WALL ASSOCIATED MYB1 is a positive regulator of secondary cell wall thickening in Brachypodium distachyon and is not found in the Brassicaceae Handakumbura, Pubudu P.; Brow, Kathryn; Whitney, Ian P. The Plant Journal, Vol. 96, Issue 3 https://doi.org/10.1111/tpj.14047	journal	September 2018
Two-hybrid protein-protein interaction analysis in Arabidopsis protoplasts: establishment of a heterodimerization map of group C and group S bZIP transcription factors Ehlert, Andrea; Weltmeier, Fridtjof; Wang, Xuan The Plant Journal, Vol. 46, Issue 5 https://doi.org/10.1111/j.1365-313X.2006.02731.x	journal	June 2006
Thigmomorphogenesis: The response of plant growth and development to mechanical stimulation Jaffe, M. J. Planta, Vol. 114, Issue 2 https://doi.org/10.1007/BF00387472	journal	January 1973
Genome-wide identification of touch- and darkness-regulated Arabidopsis genes: a focus on calmodulin-like and XTH genes Lee, Dennis; Polisensky, Diana H.; Braam, Janet New Phytologist, Vol. 165, Issue 2 https://doi.org/10.1111/j.1469-8137.2004.01238.x	journal	November 2004
Thigmomorphogenesis: a complex plant response to mechano-stimulation Chehab, E. W.; Eich, E.; Braam, J. Journal of Experimental Botany, Vol. 60, Issue 1 https://doi.org/10.1093/jxb/ern315	journal	November 2008
Specific interaction of the tomato bZIP transcription factor VSF-1 with a non-palindromic DNA sequence that controls vascular gene expression Ringli, Christoph; Keller, Beat Plant Molecular Biology, Vol. 37, Issue 6, p. 977-988 https://doi.org/10.1023/A:1006030007333	journal	August 1998
Finite Element Modeling of Shape Changes in Plant Cells Bidhendi, Amir J.; Geitmann, Anja Plant Physiology, Vol. 176, Issue 1 https://doi.org/10.1104/pp.17.01684	journal	December 2017
Cold-Shock Regulation of the Arabidopsis TCH Genes and the Effects of Modulating Intracellular Calcium Levels Polisensky, D. H.; Braam, J. Plant Physiology, Vol. 111, Issue 4 https://doi.org/10.1104/pp.111.4.1271	journal	August 1996
Thigmomorphogenesis: Changes in Cell Division and Elongation in the Internodes of Mechanically-perturbed or Ethrel-treated Bean Plants* Biro, R. L.; Hunt, E. R.; Erner, Y. Annals of Botany, Vol. 45, Issue 6 https://doi.org/10.1093/oxfordjournals.aob.a085874	journal	June 1980
Regulation of Cell Wall Thickening by a Medley of Mechanisms McCahill, Ian W.; Hazen, Samuel P. Trends in Plant Science, Vol. 24, Issue 9 https://doi.org/10.1016/j.tplants.2019.05.012	journal	September 2019
Ca ²⁺ Regulates Reactive Oxygen Species Production and pH during Mechanosensing in Arabidopsis Roots Monshausen, Gabriele B.; Bibikova, Tatiana N.; Weisenseel, Manfred H. The Plant Cell, Vol. 21, Issue 8 https://doi.org/10.1105/tpc.109.068395	journal	August 2009
Scaffold Function of Ca²⁺-Dependent Protein Kinase: Tobacco Ca²⁺-DEPENDENT PROTEIN KINASE1 Transfers 14-3-3 to the Substrate REPRESSION OF SHOOT GROWTH after Phosphorylation Ito, Takeshi; Nakata, Masaru; Fukazawa, Jutarou Plant Physiology, Vol. 165, Issue 4 https://doi.org/10.1104/pp.114.236448	journal	June 2014
The Arabidopsis bZIP transcription factor family — an update Dröge-Laser, Wolfgang; Snoek, Basten L.; Snel, Berend Current Opinion in Plant Biology, Vol. 45 https://doi.org/10.1016/j.pbi.2018.05.001	journal	October 2018
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 Love, Michael I.; Huber, Wolfgang; Anders, Simon Genome Biology, Vol. 15, Issue 12 https://doi.org/10.1186/s13059-014-0550-8	journal	December 2014
Mechanical stimulation in Brachypodium distachyon: Implications for fitness, productivity, and cell wall properties Gladala‐Kostarz, Agnieszka; Doonan, John H.; Bosch, Maurice Plant, Cell & Environment, Vol. 43, Issue 5 https://doi.org/10.1111/pce.13724	journal	February 2020
Maize calcium‐dependent protein kinase (ZmCPK11): local and systemic response to wounding, regulation by touch and components of jasmonate signaling Szczegielniak, Jadwiga; Borkiewicz, Lidia; Szurmak, Blanka Physiologia Plantarum, Vol. 146, Issue 1 https://doi.org/10.1111/j.1399-3054.2012.01587.x	journal	March 2012
Post-translational regulation of plant bZIP factors Schütze, Katia; Harter, Klaus; Chaban, Christina Trends in Plant Science, Vol. 13, Issue 5 https://doi.org/10.1016/j.tplants.2008.03.002	journal	May 2008
A MYC2/MYC3/MYC4-dependent transcription factor network regulates water spray-responsive gene expression and jasmonate levels Van Moerkercke, Alex; Duncan, Owen; Zander, Mark Proceedings of the National Academy of Sciences, Vol. 116, Issue 46 https://doi.org/10.1073/pnas.1911758116	journal	October 2019
Affinity‐based high‐resolution analysis of DNA binding by VASCULAR‐RELATED NAC‐DOMAIN7 via fluorescence correlation spectroscopy Tamura, Taizo; Endo, Hitoshi; Suzuki, Atsunobu The Plant Journal, Vol. 100, Issue 2 https://doi.org/10.1111/tpj.14443	journal	August 2019
Acclimation kinetics of physiological and molecular responses of plants to multiple mechanical loadings Martin, Ludovic; Leblanc-Fournier, Nathalie; Julien, Jean-Louis Journal of Experimental Botany, Vol. 61, Issue 9 https://doi.org/10.1093/jxb/erq069	journal	April 2010
The dynamics of touch‐responsive gene expression in cereals Darwish, Essam; Ghosh, Ritesh; Bentzer, Johan The Plant Journal, Vol. 116, Issue 1 https://doi.org/10.1111/tpj.16269	journal	June 2023
Functional characterization of the Arabidopsis transcription factor bZIP29 reveals its role in leaf and root development Van Leene, Jelle; Blomme, Jonas; Kulkarni, Shubhada R. Journal of Experimental Botany, Vol. 67, Issue 19 https://doi.org/10.1093/jxb/erw347	journal	September 2016
A bZIP Protein, VIP1, Is a Regulator of Osmosensory Signaling in Arabidopsis Tsugama, Daisuke; Liu, Shenkui; Takano, Tetsuo Plant Physiology, Vol. 159, Issue 1 https://doi.org/10.1104/pp.112.197020	journal	March 2012
The Arabidopsis bHLH Transcription Factors MYC3 and MYC4 Are Targets of JAZ Repressors and Act Additively with MYC2 in the Activation of Jasmonate Responses Fernández-Calvo, Patricia; Chini, Andrea; Fernández-Barbero, Gemma The Plant Cell, Vol. 23, Issue 2 https://doi.org/10.1105/tpc.110.080788	journal	February 2011
g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update) Raudvere, Uku; Kolberg, Liis; Kuzmin, Ivan Nucleic Acids Research, Vol. 47, Issue W1 https://doi.org/10.1093/nar/gkz369	journal	May 2019
Mechanical Stress Initiates and Sustains the Morphogenesis of Wavy Leaf Epidermal Cells Bidhendi, Amir J.; Altartouri, Bara; Gosselin, Frédérick P. Cell Reports, Vol. 28, Issue 5 https://doi.org/10.1016/j.celrep.2019.07.006	journal	July 2019
14-3-3 Proteins Regulate Intracellular Localization of the bZIP Transcriptional Activator RSG Igarashi, Daisuke; Ishida, Sarahmi; Fukazawa, Jutarou The Plant Cell, Vol. 13, Issue 11 https://doi.org/10.1105/tpc.010188	journal	November 2001
Developmental Patterning by Mechanical Signals in Arabidopsis Hamant, O.; Heisler, M. G.; Jonsson, H. Science, Vol. 322, Issue 5908 https://doi.org/10.1126/science.1165594	journal	December 2008
Water-stressed or not, the mechanical acclimation is a priority requirement for trees Niez, Benjamin; Dlouha, Jana; Moulia, Bruno Trees, Vol. 33, Issue 1 https://doi.org/10.1007/s00468-018-1776-y	journal	October 2018
Functional characterization of cinnamyl alcohol dehydrogenase and caffeic acid O-methyltransferase in Brachypodium distachyon Trabucco, Gina M.; Matos, Dominick A.; Lee, Scott J. BMC Biotechnology, Vol. 13, Issue 1 https://doi.org/10.1186/1472-6750-13-61	journal	January 2013
Mechanical Stress Induces Biotic and Abiotic Stress Responses via a Novel cis-Element Walley, Justin W.; Coughlan, Sean; Hudson, Matthew E. PLoS Genetics, Vol. 3, Issue 10 https://doi.org/10.1371/journal.pgen.0030172	journal	January 2007
Identification of a cis-acting regulatory motif recognized by MYB46, a master transcriptional regulator of secondary wall biosynthesis Kim, Won-Chan; Ko, Jae-Heung; Han, Kyung-Hwan Plant Molecular Biology, Vol. 78, Issue 4-5 https://doi.org/10.1007/s11103-012-9880-7	journal	January 2012
MYB46 and MYB83 Bind to the SMRE Sites and Directly Activate a Suite of Transcription Factors and Secondary Wall Biosynthetic Genes Zhong, Ruiqin; Ye, Zheng-Hua Plant and Cell Physiology, Vol. 53, Issue 2 https://doi.org/10.1093/pcp/pcr185	journal	December 2011
Secondary Wall Regulating NACs Differentially Bind at the Promoter at a CELLULOSE SYNTHASE A4 Cis-eQTL Olins, Jennifer R.; Lin, Li; Lee, Scott J. Frontiers in Plant Science, Vol. 9 https://doi.org/10.3389/fpls.2018.01895	journal	December 2018
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads Pertea, Mihaela; Pertea, Geo M.; Antonescu, Corina M. Nature Biotechnology, Vol. 33, Issue 3 https://doi.org/10.1038/nbt.3122	journal	February 2015
Cell Walls and the Developmental Anatomy of the Brachypodium distachyon Stem Internode Matos, Dominick A.; Whitney, Ian P.; Harrington, Michael J. PLoS ONE, Vol. 8, Issue 11 https://doi.org/10.1371/journal.pone.0080640	journal	November 2013
Waving and skewing: how gravity and the surface of growth media affect root development in Arabidopsis Oliva, Michele; Dunand, Christophe New Phytologist, Vol. 176, Issue 1 https://doi.org/10.1111/j.1469-8137.2007.02184.x	journal	October 2007
Structure-based Prediction of bZIP Partnering Specificity Grigoryan, Gevorg; Keating, Amy E. Journal of Molecular Biology, Vol. 355, Issue 5 https://doi.org/10.1016/j.jmb.2005.11.036	journal	February 2006
Mugifumi, a beneficial farm work of adding mechanical stress by treading to wheat and barley seedlings Iida, Hidetoshi Frontiers in Plant Science, Vol. 5 https://doi.org/10.3389/fpls.2014.00453	journal	September 2014
Improving Lodging Resistance: Using Wheat and Rice as Classical Examples Shah, Liaqat; Yahya, Muhammad; Shah, Syed Mehar Ali International Journal of Molecular Sciences, Vol. 20, Issue 17 https://doi.org/10.3390/ijms20174211	journal	August 2019
A Tobacco Calcium-Dependent Protein Kinase, CDPK1, Regulates the Transcription Factor REPRESSION OF SHOOT GROWTH in Response to Gibberellins Ishida, Sarahmi; Yuasa, Takashi; Nakata, Masaru The Plant Cell, Vol. 20, Issue 12 https://doi.org/10.1105/tpc.107.057489	journal	December 2008
Strain Mechanosensing Quantitatively Controls Diameter Growth and PtaZFP2 Gene Expression in Poplar Coutand, Catherine; Martin, Ludovic; Leblanc-Fournier, Nathalie Plant Physiology, Vol. 151, Issue 1 https://doi.org/10.1104/pp.109.138164	journal	July 2009
VIP1 response elements mediate mitogen-activated protein kinase 3-induced stress gene expression Pitzschke, Andrea; Djamei, Armin; Teige, Markus Proceedings of the National Academy of Sciences, Vol. 106, Issue 43 https://doi.org/10.1073/pnas.0905599106	journal	October 2009
To respond or not to respond, the recurring question in plant mechanosensitivity Leblanc-Fournier, Nathalie; Martin, Ludovic; Lenne, Catherine Frontiers in Plant Science, Vol. 5 https://doi.org/10.3389/fpls.2014.00401	journal	August 2014
Changes in ambient temperature are the prevailing cue in determining Brachypodium distachyon diurnal gene regulation MacKinnon, Kirk J‐M.; Cole, Benjamin J.; Yu, Chang New Phytologist, Vol. 227, Issue 6 https://doi.org/10.1111/nph.16507	journal	April 2020
Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte Gibalová, Antónia; Steinbachová, Lenka; Hafidh, Said Plant Reproduction, Vol. 30, Issue 1 https://doi.org/10.1007/s00497-016-0295-5	journal	November 2016
bZIP transcription factors in Arabidopsis Jakoby, Marc; Weisshaar, Bernd; Dröge-Laser, Wolfgang Trends in Plant Science, Vol. 7, Issue 3 https://doi.org/10.1016/S1360-1385(01)02223-3	journal	March 2002
The Sequence Alignment/Map format and SAMtools Li, H.; Handsaker, B.; Wysoker, A. Bioinformatics, Vol. 25, Issue 16 https://doi.org/10.1093/bioinformatics/btp352	journal	June 2009
PIN‐mediated polar auxin transport facilitates root−obstacle avoidance Lee, Hyo‐Jun; Kim, Hyun‐Soon; Park, Jeong Mee New Phytologist, Vol. 225, Issue 3 https://doi.org/10.1111/nph.16076	journal	August 2019
Involvement of 14-3-3 Signaling Protein Binding in the Functional Regulation of the Transcriptional Activator REPRESSION OF SHOOT GROWTH by Gibberellins Ishida, Sarahmi; Fukazawa, Jutarou; Yuasa, Takashi The Plant Cell, Vol. 16, Issue 10 https://doi.org/10.1105/tpc.104.024604	journal	September 2004
Auxin mediates the touch-induced mechanical stimulation of adventitious root formation under windy conditions in Brachypodium distachyon Nam, Bo Eun; Park, Young-Joon; Gil, Kyung-Eun BMC Plant Biology, Vol. 20, Issue 1 https://doi.org/10.1186/s12870-020-02544-8	journal	July 2020
Grass secondary cell walls, Brachypodium distachyon as a model for discovery Coomey, Joshua H.; Sibout, Richard; Hazen, Samuel P. New Phytologist, Vol. 227, Issue 6 https://doi.org/10.1111/nph.16603	journal	June 2020
Dimerization specificity of all 67 B-ZIP motifs in Arabidopsis thaliana: a comparison to Homo sapiens B-ZIP motifs Deppmann, C. D. Nucleic Acids Research, Vol. 32, Issue 11 https://doi.org/10.1093/nar/gkh653	journal	June 2004
A Myb transcription factor (TaMyb1) from wheat roots is expressed during hypoxia: roles in response to the oxygen concentration in root environment and abiotic stresses Lee, Tong Geon; Jang, Cheol Seong; Kim, Jae Yoon Physiologia Plantarum, Vol. 129, Issue 2 https://doi.org/10.1111/j.1399-3054.2006.00828.x	journal	January 2007
A NAC domain protein family contributing to the regulation of wood formation in poplar: NAC domain protein family regulates wood formation Ohtani, Misato; Nishikubo, Nobuyuki; Xu, Bo The Plant Journal, Vol. 67, Issue 3 https://doi.org/10.1111/j.1365-313X.2011.04614.x	journal	June 2011
Combinatorial control of Arabidopsis proline dehydrogenase transcription by specific heterodimerisation of bZIP transcription factors Weltmeier, Fridtjof; Ehlert, Andrea; Mayer, Caroline S. The EMBO Journal, Vol. 25, Issue 13 https://doi.org/10.1038/sj.emboj.7601206	journal	June 2006
Pectin Chemistry and Cellulose Crystallinity Govern Pavement Cell Morphogenesis in a Multi-Step Mechanism Altartouri, Bara; Bidhendi, Amir J.; Tani, Tomomi Plant Physiology, Vol. 181, Issue 1 https://doi.org/10.1104/pp.19.00303	journal	July 2019
iDREM: Interactive visualization of dynamic regulatory networks Ding, Jun; Hagood, James S.; Ambalavanan, Namasivayam PLOS Computational Biology, Vol. 14, Issue 3 https://doi.org/10.1371/journal.pcbi.1006019	journal	March 2018
Genome-wide evolutionary characterization and analysis of bZIP transcription factors and their expression profiles in response to multiple abiotic stresses in Brachypodium distachyon Liu, Xiang; Chu, Zhaoqing BMC Genomics, Vol. 16, Issue 1 https://doi.org/10.1186/s12864-015-1457-9	journal	March 2015
Poplar stem transcriptome is massively remodelled in response to single or repeated mechanical stimuli Pomiès, Lise; Decourteix, Mélanie; Franchel, Jérôme BMC Genomics, Vol. 18, Issue 1 https://doi.org/10.1186/s12864-017-3670-1	journal	April 2017
Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities Heinz, Sven; Benner, Christopher; Spann, Nathanael Molecular Cell, Vol. 38, Issue 4 https://doi.org/10.1016/j.molcel.2010.05.004	journal	May 2010
Mechanical Stress Acts via Katanin to Amplify Differences in Growth Rate between Adjacent Cells in Arabidopsis Uyttewaal, Magalie; Burian, Agata; Alim, Karen Cell, Vol. 149, Issue 2 https://doi.org/10.1016/j.cell.2012.02.048	journal	April 2012

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