CHARMM: The biomolecular simulation program
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July 2009 |
Development of Range-Corrected Deep Learning Potentials for Fast, Accurate Quantum Mechanical/Molecular Mechanical Simulations of Chemical Reactions in Solution
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October 2021 |
Potential energy functions for atomic-level simulations of water and organic and biomolecular systems
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May 2005 |
Luminescent and Redox-Active Polynuclear Transition Metal Complexes †
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January 1996 |
Donor−Acceptor Interactions and Electron Transfer in Cyano-Bridged Trinuclear Compounds
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November 2006 |
Computer Simulation of Solid and Liquid Benzene with an Atomistic Interaction Potential Derived from ab Initio Calculations
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November 2004 |
Adaptive machine learning framework to accelerate ab initio molecular dynamics
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December 2014 |
An automated approach for the parameterization of accurate intermolecular force‐fields: Pyridine as a case study
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February 2012 |
Modeling Molecular Emitters in Organic Light-Emitting Diodes with the Quantum Mechanical Bespoke Force Field
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July 2021 |
The missing term in effective pair potentials
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November 1987 |
Spectroscopic studies of preferential and asymmetric solvation in substituted cyanoiron(II) complexes
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August 1983 |
Energy‐adjusted a b i n i t i o pseudopotentials for the first row transition elements
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January 1987 |
Universal QM/MM approaches for general nanoscale applications
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February 2023 |
TeraChem : A graphical processing unit ‐accelerated electronic structure package for large‐scale ab initio molecular dynamics
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July 2020 |
Ligand Rotation Distinguishes First- and Second-Generation Ruthenium Metathesis Catalysts
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December 2002 |
QuickFF: A program for a quick and easy derivation of force fields for metal-organic frameworks from ab initio input
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March 2015 |
Insight into the isomerization mechanism of retinal proteins from hybrid quantum mechanics/molecular mechanics simulations
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July 2021 |
A unified picture of the covalent bond within quantum-accurate force fields: From organic molecules to metallic complexes’ reactivity
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May 2019 |
Simulating Ru L 3 -Edge X-ray Absorption Spectroscopy with Time-Dependent Density Functional Theory: Model Complexes and Electron Localization in Mixed-Valence Metal Dimers
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May 2013 |
A General Quantum Mechanically Derived Force Field (QMDFF) for Molecules and Condensed Phase Simulations
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September 2014 |
Time-dependent density functional theory within the Tamm–Dancoff approximation
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December 1999 |
Resolving Femtosecond Solvent Reorganization Dynamics in an Iron Complex by Nonadiabatic Dynamics Simulations
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July 2022 |
Development and testing of a general amber force field
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January 2004 |
Structure and Energetics of Dye-Sensitized NiO Interfaces in Water from Ab Initio MD and Large-Scale GW Calculations
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July 2021 |
NWChem: Past, present, and future
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May 2020 |
The Amber biomolecular simulation programs
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January 2005 |
Two-dimensional vibrational-electronic spectroscopy
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October 2015 |
Measuring Coherently Coupled Intramolecular Vibrational and Charge-Transfer Dynamics with Two-Dimensional Vibrational–Electronic Spectroscopy
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March 2015 |
Molecular Models of Hydroxide, Oxyhydroxide, and Clay Phases and the Development of a General Force Field
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January 2004 |
Extension of the QuickFF force field protocol for an improved accuracy of structural, vibrational, mechanical and thermal properties of metal-organic frameworks
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February 2018 |
Fine Tuning of the Electronic Coupling between Metal Centers in Cyano-Bridged Mixed-Valent Trinuclear Complexes
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September 2004 |
Comparing classical approaches with empirical or quantum-mechanically derived force fields for the simulation electronic lineshapes: application to coumarin dyes
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May 2016 |
Quantum Mechanical Continuum Solvation Models
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August 2005 |
Electronic coupling between remote metal centers in cyanobridged polynuclear complexes
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May 1993 |
Energy-adjustedab initio pseudopotentials for the second and third row transition elements
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January 1990 |
Intervalence Charge Transfer (IVCT) in Trinuclear and Tetranuclear Complexes of Iron, Ruthenium, and Osmium
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June 2006 |
Linear solvation energy relationships. 7. Correlations between the solvent-donicity and acceptor-number scales and the solvatochromic parameters .pi.*, .alpha., and .beta.
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February 1981 |
Rationale for mixing exact exchange with density functional approximations
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December 1996 |
Polymorphic transitions in single crystals: A new molecular dynamics method
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December 1981 |
Femtosecond X-ray Spectroscopy Directly Quantifies Transient Excited-State Mixed Valency
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January 2022 |
Reversible Solid State Redox of an Octacyanometallate-Bridged Coordination Polymer by Electrochemical Ion Insertion/Extraction
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March 2013 |
Spectroscopy in Complex Environments from QM–MM Simulations
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February 2018 |
Fixed-Charge Atomistic Force Fields for Molecular Dynamics Simulations in the Condensed Phase: An Overview
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February 2018 |
Sequential Bending and Twisting around C–C Single Bonds by Mechanical Lifting of a Pre-Adsorbed Polymer
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December 2019 |
Absorption and Emission Spectra of a Flexible Dye in Solution: A Computational Time-Dependent Approach
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September 2013 |
Density Relaxation in Time-Dependent Density Functional Theory: Combining Relaxed Density Natural Orbitals and Multireference Perturbation Theories for an Improved Description of Excited States
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July 2014 |
Current trends and future challenges in the experimental, theoretical and computational analysis of intervalence charge transfer (IVCT) transitions
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January 2006 |
Structure and Dynamics of Ferrocyanide and Ferricyanide Anions in Water and Heavy Water: An Insight by MD Simulations and 2D IR Spectroscopy
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December 2014 |
Artificial Photosynthetic Systems Based on [FeFe]-Hydrogenase Mimics: the Road to High Efficiency for Light-Driven Hydrogen Evolution
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February 2012 |
Contracted Gaussian basis sets for molecular calculations. I. Second row atoms, Z=11–18
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May 1980 |
Active learning accelerates ab initio molecular dynamics on reactive energy surfaces
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March 2021 |
Solvent control of charge transfer excited state relaxation pathways in [Fe(2,2′-bipyridine)(CN) 4 ] 2−
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January 2018 |
Predicting Solvent Effects on SN2 Reaction Rates: Comparison of QM/MM, Implicit, and MM Explicit Solvent Models
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October 2022 |
Solvatochromic and Ionochromic Effects of Iron(II)bis(1,10-phenanthroline)dicyano: a Theoretical Study
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February 2010 |
Ab Initio Molecular Dynamics Simulations of Methylammonium Lead Iodide Perovskite Degradation by Water
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June 2015 |
Ab Initio Molecular Dynamics Computation of the Infrared Spectrum of Aqueous Uracil
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September 2003 |
Canonical sampling through velocity rescaling
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January 2007 |
Could Quantum Mechanical Properties Be Reflected on Classical Molecular Dynamics? The Case of Halogenated Organic Compounds of Biological Interest
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December 2019 |
Modeling absorption and fluorescence solvatochromism with QM/Classical approaches
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February 2015 |
Investigating vibrational anharmonic couplings in cyanide-bridged transition metal mixed valence complexes using two-dimensional infrared spectroscopy
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February 2014 |
Nonadiabatic molecular dynamics with solvent effects: A LR-TDDFT QM/MM study of ruthenium (II) tris (bipyridine) in water
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November 2011 |
Determination of Alkali and Halide Monovalent Ion Parameters for Use in Explicitly Solvated Biomolecular Simulations
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July 2008 |
GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit
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February 2013 |
Accuracy of Quantum Mechanically Derived Force-Fields Parameterized from Dispersion-Corrected DFT Data: The Benzene Dimer as a Prototype for Aromatic Interactions
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October 2015 |
Computational Thermochemistry: Scale Factor Databases and Scale Factors for Vibrational Frequencies Obtained from Electronic Model Chemistries
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August 2010 |
Single-molecule junctions of multinuclear organometallic wires: long-range carrier transport brought about by metal–metal interaction
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January 2021 |
Structure of Metal–Organic Framework Glasses by Ab Initio Molecular Dynamics
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August 2020 |
Photocatalytic Hydrogen Evolution from Rhenium(I) Complexes to [FeFe] Hydrogenase Mimics in Aqueous SDS Micellar Systems: A Biomimetic Pathway
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May 2010 |
Reversible Electron Transfer in a Linear {Fe2Co} Trinuclear Complex Induced by Thermal Treatment and Photoirraditaion
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March 2012 |
Environmental Effects on Guanine-Thymine Mispair Tautomerization Explored with Quantum Mechanical/Molecular Mechanical Free Energy Simulations
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May 2020 |
Charge-displacement analysis for excited states
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February 2014 |
Electronic Coherence, Vibrational Coherence, and Solvent Degrees of Freedom in the Femtosecond Spectroscopy of Mixed-Valence Metal Dimers in H2O and D2O
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March 1995 |
Chemical control of competing electron transfer pathways in iron tetracyano-polypyridyl photosensitizers
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January 2020 |
Predicting Spontaneous Orientational Self-Assembly: In Silico Design of Materials with Quantum Mechanically Derived Force Fields
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December 2021 |
Light-Driven Water Oxidation with Metal Hexacyanometallate Heterogeneous Catalysts
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April 2014 |
Adiabatic-Molecular Dynamics Generalized Vertical Hessian Approach: A Mixed Quantum Classical Method To Compute Electronic Spectra of Flexible Molecules in the Condensed Phase
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December 2019 |
Influence of Solvent on the Spectroscopic Properties of Cyano Complexes of Ruthenium(II)
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January 1996 |
Developing Consistent Molecular Dynamics Force Fields for Biological Chromophores via Force Matching
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December 2018 |
Comparative absorption, electroabsorption and electrochemical studies of intervalence electron transfer and electronic coupling in cyanide-bridged bimetallic systems: ancillary ligand effects
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March 2000 |
Scalable molecular dynamics on CPU and GPU architectures with NAMD
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July 2020 |
A general forcefield for accurate phonon properties of metal–organic frameworks
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January 2016 |
Charge Model 5: An Extension of Hirshfeld Population Analysis for the Accurate Description of Molecular Interactions in Gaseous and Condensed Phases
- Marenich, Aleksandr V.; Jerome, Steven V.; Cramer, Christopher J.
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Journal of Chemical Theory and Computation, Vol. 8, Issue 2, p. 527-541
https://doi.org/10.1021/ct200866d
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February 2012 |
Structural and electronic responses of coordination compounds to changes in the molecule and molecular environment
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July 1992 |
NWChem: A comprehensive and scalable open-source solution for large scale molecular simulations
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September 2010 |
Photoinitiated electron collection in polyazine chromophores coupled to water reduction catalysts for solar H2 production
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May 2013 |
Classical Force Fields Tailored for QM Applications: Is It Really a Feasible Strategy?
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September 2017 |
Tinker 8: Software Tools for Molecular Design
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August 2018 |
BuRNN: Buffer Region Neural Network Approach for Polarizable-Embedding Neural Network/Molecular Mechanics Simulations
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April 2022 |
Excited-state solvation structure of transition metal complexes from molecular dynamics simulations and assessment of partial atomic charge methods
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January 2019 |
Flexible Superlubricity Unveiled in Sidewinding Motion of Individual Polymeric Chains
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May 2022 |
Accounting for Vibronic Features through a Mixed Quantum-Classical Scheme: Structure, Dynamics, and Absorption Spectra of a Perylene Diimide Dye in Solution
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October 2020 |
Iron’s Wake: The Performance of Quantum Mechanical-Derived Versus General-Purpose Force Fields Tested on a Luminescent Iron Complex
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July 2020 |
Hydrogen Activation by Biomimetic [NiFe]-Hydrogenase Model Containing Protected Cyanide Cofactors
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July 2013 |
Molecular dynamics with coupling to an external bath
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October 1984 |
Simulating the solvation structure of low- and high-spin [Fe(bpy)3]2+: long-range dispersion and many-body effects
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January 2022 |
Dynamical and Environmental Effects on the Optical Properties of an Heteroleptic Ru(II)–Polypyridine Complex: A Multilevel Approach Combining Accurate Ground and Excited State QM-Derived Force Fields, MD and TD-DFT
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November 2018 |
Molecular mixed-valence cyanide bridged CoIII–FeII complexes
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September 2005 |
Artificial hydrogenases: biohybrid and supramolecular systems for catalytic hydrogen production or uptake
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April 2015 |
Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes
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March 1977 |
Preface: Special Topic: From Quantum Mechanics to Force Fields
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October 2017 |
QUBEKit: Automating the Derivation of Force Field Parameters from Quantum Mechanics
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January 2019 |
Structural and Photophysical Properties of Coordination Networks Combining [Ru(bipy)(CN)4]2- Anions and Lanthanide(III) Cations: Rates of Photoinduced Ru-to-Lanthanide Energy Transfer and Sensitized Near-Infrared Luminescence
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May 2005 |
Insights into the Explicit Mechanism and Dynamic Rate of Regeneration of Sensitizing Organic Dyes by Transition-Metal Redox Mediators in Solar Cells Using Ab Initio Molecular Dynamics
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December 2022 |
On the faithfulness of molecular mechanics representations of proteins towards quantum-mechanical energy surfaces
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October 2020 |
Femtosecond experiments and absolute rate calculations on intervalence electron transfer of mixed‐valence compounds
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January 1993 |
Self‐consistent molecular orbital methods. XX. A basis set for correlated wave functions
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January 1980 |
Combined QM/MM and Classical Molecular Dynamics Study of [Ru(bpy) 3 ] 2+ in Water
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May 2009 |
From quantum mechanics to force fields: new methodologies for the classical simulation of complex systems
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March 2012 |
Contemporary Issues in Electron Transfer Research
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January 1996 |
Developing accurate intramolecular force fields for conjugated systems through explicit coupling terms
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May 2018 |
Electron Localization Dynamics in the Triplet Excited State of [Ru(bpy) 3 ] 2+ in Aqueous Solution
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April 2010 |
Accurate Quantum-Mechanically Derived Force-Fields through a Fragment-Based Approach: Balancing Specificity and Transferability in the Prediction of Self-Assembly in Soft Matter
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October 2022 |
The electronic spectrum of Fe2+ ion in aqueous solution: A sequential Monte Carlo/quantum mechanical study
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November 2007 |
Comprehensive Experimental and Computational Spectroscopic Study of Hexacyanoferrate Complexes in Water: From Infrared to X-ray Wavelengths
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journal
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April 2018 |
Solvent Switching of Intramolecular Energy Transfer in Bichromophoric Systems: Photophysics of (2,2‘-Bipyridine)tetracyanoruthenate(II)/Pyrenyl Complexes
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September 2003 |
High Power Density of One-Compartment H2O2 Fuel Cells Using Pyrazine-Bridged Fe[MC(CN)4] (MC = Pt2+ and Pd2+) Complexes as the Cathode
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January 2014 |
Automated Parameterization of Quantum Mechanically Derived Force Fields for Soft Materials and Complex Fluids: Development and Validation
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June 2021 |
MOF-FF - A flexible first-principles derived force field for metal-organic frameworks
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March 2013 |
Enabling Large-Scale Condensed-Phase Hybrid Density Functional Theory Based Ab Initio Molecular Dynamics. 1. Theory, Algorithm, and Performance
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February 2020 |
Elucidation of the photoaquation reaction mechanism in ferrous hexacyanide using synchrotron x-rays with sub-pulse-duration sensitivity
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October 2019 |
Syntheses and Characterization of Ruthenium(II) Tetrakis(Pyridine) Complexes. An Advanced Coordination Chemistry Experiment or Mini-Project
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May 2004 |
UFF, a full periodic table force field for molecular mechanics and molecular dynamics simulations
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journal
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December 1992 |
Photocatalytic Hydroxylation of Benzene by Dioxygen to Phenol with a Cyano-Bridged Complex Containing FeII and RuII Incorporated in Mesoporous Silica–Alumina
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journal
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June 2016 |
Development and Testing of the OPLS All-Atom Force Field on Conformational Energetics and Properties of Organic Liquids
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January 1996 |
Probing the Electronic Properties of a Trinuclear Molecular Wire Involving Isocyanoferrocene and Iron(II) Phthalocyanine Motifs
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August 2013 |
Parametrization and Validation of Intramolecular Force Fields Derived from DFT Calculations
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August 2007 |
Joyce and Ulysses: integrated and user-friendly tools for the parameterization of intramolecular force fields from quantum mechanical data
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January 2013 |
Exploiting the quantum mechanically derived force field for functional materials simulations
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September 2021 |
Metal Ion Modeling Using Classical Mechanics
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January 2017 |
Harder, better, faster, stronger: Large-scale QM and QM/MM for predictive modeling in enzymes and proteins
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February 2022 |
Towards electronic structure-based ab-initio molecular dynamics simulations with hundreds of millions of atoms
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July 2022 |
Practical Aspects of Free-Energy Calculations: A Review
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June 2014 |
Decomposing total IR spectra of aqueous systems into solute and solvent contributions: A computational approach using maximally localized Wannier orbitals
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June 2005 |
Unconventional two-step spin relaxation dynamics of [Re(CO) 3 (im)(phen)] + in aqueous solution
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journal
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January 2019 |
Short- and Long-Range Solvation Effects on the Transient UV–Vis Absorption Spectra of a Ru(II)–Polypyridine Complex Disentangled by Nonequilibrium Molecular Dynamics
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May 2019 |
Toward reliable density functional methods without adjustable parameters: The PBE0 model
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April 1999 |
Machine learning molecular dynamics for the simulation of infrared spectra
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January 2017 |
Comparison of simple potential functions for simulating liquid water
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July 1983 |
QM/MM nonadiabatic dynamics simulation on ultrafast excited-state relaxation in osmium(II) compounds in solution
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journal
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May 2019 |
LAMMPS - a flexible simulation tool for particle-based materials modeling at the atomic, meso, and continuum scales
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February 2022 |
ANI-1: an extensible neural network potential with DFT accuracy at force field computational cost
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January 2017 |
Direct observation of coherent femtosecond solvent reorganization coupled to intramolecular electron transfer
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February 2021 |
Tailoring mixed-valence CoIII/FeII complexes for their potential use as sensitizers in dye sensitized solar cells
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journal
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January 2008 |
Metal–Organic Frameworks and Self-Assembled Supramolecular Coordination Complexes: Comparing and Contrasting the Design, Synthesis, and Functionality of Metal–Organic Materials
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November 2012 |
Machine Learning in QM/MM Molecular Dynamics Simulations of Condensed-Phase Systems
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journal
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April 2021 |