Soil microbiome feedbacks during disturbance-driven forest ecosystem conversion

Nelson, Amelia R.; Fegel, Timothy S.; Danczak, Robert E.; Caiafa, Marcos V.; Roth, Holly K.; Dunn, Oliver I.; Turvold, Cosette A.; Borch, Thomas; Glassman, Sydney I.; Barnes, Rebecca T.; Rhoades, Charles C.; Wilkins, Michael J.

doi:10.1093/ismejo/wrae047

Title: Soil microbiome feedbacks during disturbance-driven forest ecosystem conversion

Journal Article · 18 March 2024 · The ISME Journal

DOI: https://doi.org/10.1093/ismejo/wrae047 · OSTI ID:2331320

Nelson, Amelia R.; Fegel, Timothy S.; Danczak, Robert E.; Caiafa, Marcos V.; Roth, Holly K.; Dunn, Oliver I.; Turvold, Cosette A.; Borch, Thomas; Glassman, Sydney I.; Barnes, Rebecca T.; Rhoades, Charles C.; Wilkins, Michael J.

Abstract Disturbances cause rapid changes to forests, with different disturbance types and severities creating unique ecosystem trajectories that can impact the underlying soil microbiome. Pile burning—the combustion of logging residue on the forest floor—is a common fuel reduction practice that can have impacts on forest soils analogous to those following high-severity wildfire. Further, pile burning following clear-cut harvesting can create persistent openings dominated by nonwoody plants surrounded by dense regenerating conifer forest. A paired 60-year chronosequence of burn scar openings and surrounding regenerating forest after clear-cut harvesting provides a unique opportunity to assess whether belowground microbial processes mirror aboveground vegetation during disturbance-induced ecosystem shifts. Soil ectomycorrhizal fungal diversity was reduced the first decade after pile burning, which could explain poor tree seedling establishment and subsequent persistence of herbaceous species within the openings. Fine-scale changes in the soil microbiome mirrored aboveground shifts in vegetation, with short-term changes to microbial carbon cycling functions resembling a postfire microbiome (e.g. enrichment of aromatic degradation genes) and respiration in burn scars decoupled from substrate quantity and quality. Broadly, however, soil microbiome composition and function within burn scar soils converged with that of the surrounding regenerating forest six decades after the disturbances, indicating potential microbial resilience that was disconnected from aboveground vegetation shifts. This work begins to unravel the belowground microbial processes that underlie disturbance-induced ecosystem changes, which are increasing in frequency tied to climate change.

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Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

Grant/Contract Number:: AC02-05CH11231

OSTI ID:: 2331320

Journal Information:: The ISME Journal, Journal Name: The ISME Journal Journal Issue: 1 Vol. 18; ISSN 1751-7362

Publisher:: Oxford University PressCopyright Statement

Country of Publication:: United Kingdom

Language:: English

References (90)

Global biogeography of microbial nitrogen-cycling traits in soil Nelson, Michaeline B.; Martiny, Adam C.; Martiny, Jennifer B. H. Proceedings of the National Academy of Sciences, Vol. 113, Issue 29 https://doi.org/10.1073/pnas.1601070113	journal	July 2016
Limitations to recovery following wildfire in dry forests of southern Colorado and northern New Mexico, USA Rodman, Kyle C.; Veblen, Thomas T.; Chapman, Teresa B. Ecological Applications, Vol. 30, Issue 1 https://doi.org/10.1002/eap.2001	journal	October 2019
UNITE: a database providing web-based methods for the molecular identification of ectomycorrhizal fungi: Methods Kõljalg, Urmas; Larsson, Karl-Henrik; Abarenkov, Kessy New Phytologist, Vol. 166, Issue 3 https://doi.org/10.1111/j.1469-8137.2005.01376.x	journal	March 2005
The effect of different pine hosts on the sampling of Rhizopogon spore banks in five Eastern Sierra Nevada forests Rusca, T. A.; Kennedy, P. G.; Bruns, T. D. New Phytologist, Vol. 170, Issue 3 https://doi.org/10.1111/j.1469-8137.2006.01689.x	journal	March 2006
Picante: R tools for integrating phylogenies and ecology Kembel, S. W.; Cowan, P. D.; Helmus, M. R. Bioinformatics, Vol. 26, Issue 11 https://doi.org/10.1093/bioinformatics/btq166	journal	April 2010
The chemistry of soil organic nitrogen: a review Schulten, H. -R.; Schnitzer, M. Biology and Fertility of Soils, Vol. 26, Issue 1 https://doi.org/10.1007/s003740050335	journal	November 1997
Warmer and Drier Fire Seasons Contribute to Increases in Area Burned at High Severity in Western US Forests From 1985 to 2017 Parks, S. A.; Abatzoglou, J. T. Geophysical Research Letters, Vol. 47, Issue 22 https://doi.org/10.1029/2020GL089858	journal	November 2020
DADA2: High-resolution sample inference from Illumina amplicon data Callahan, Benjamin J.; McMurdie, Paul J.; Rosen, Michael J. Nature Methods, Vol. 13, Issue 7 https://doi.org/10.1038/nmeth.3869	journal	May 2016
KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold Aramaki, Takuya; Blanc-Mathieu, Romain; Endo, Hisashi Bioinformatics, Vol. 36, Issue 7 https://doi.org/10.1093/bioinformatics/btz859	journal	November 2019
The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems van der Heijden, Marcel G. A.; Bardgett, Richard D.; van Straalen, Nico M. Ecology Letters, Vol. 11, Issue 3 https://doi.org/10.1111/j.1461-0248.2007.01139.x	journal	March 2008
Metagenomic biomarker discovery and explanation Segata, Nicola; Izard, Jacques; Waldron, Levi Genome Biology, Vol. 12, Issue 6 https://doi.org/10.1186/gb-2011-12-6-r60	journal	January 2011
Ecological consequences of compound disturbances in forest ecosystems: a systematic review Kleinman, J. S.; Goode, J. D.; Fries, A. C. Ecosphere, Vol. 10, Issue 11 https://doi.org/10.1002/ecs2.2962	journal	November 2019
Roots and Associated Fungi Drive Long-Term Carbon Sequestration in Boreal Forest Clemmensen, K. E.; Bahr, A.; Ovaskainen, O. Science, Vol. 339, Issue 6127 https://doi.org/10.1126/science.1231923	journal	March 2013
Record‐setting climate enabled the extraordinary 2020 fire season in the western United States Higuera, Philip E.; Abatzoglou, John T. Global Change Biology, Vol. 27, Issue 1 https://doi.org/10.1111/gcb.15388	journal	October 2020
Soil Heating in Fire (SheFire): A model and measurement method for estimating soil heating and effects during wildland fires Brady, Mary K.; Dickinson, Matthew B.; Miesel, Jessica R. Ecological Applications, Vol. 32, Issue 6 https://doi.org/10.1002/eap.2627	journal	June 2022
Spore heat resistance plays an important role in disturbance-mediated assemblage shift of ectomycorrhizal fungi colonizing Pinus muricata seedlings Peay, Kabir G.; Garbelotto, Matteo; Bruns, Thomas D. Journal of Ecology, Vol. 97, Issue 3 https://doi.org/10.1111/j.1365-2745.2009.01489.x	journal	May 2009
MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies Kang, Dongwan D.; Li, Feng; Kirton, Edward PeerJ, Vol. 7 https://doi.org/10.7717/peerj.7359	journal	January 2019
Wildfires as an ecosystem service Pausas, Juli G.; Keeley, Jon E. Frontiers in Ecology and the Environment, Vol. 17, Issue 5 https://doi.org/10.1002/fee.2044	journal	May 2019
Evidence for declining forest resilience to wildfires under climate change Stevens‐Rumann, Camille S.; Kemp, Kerry B.; Higuera, Philip E. Ecology Letters, Vol. 21, Issue 2 https://doi.org/10.1111/ele.12889	journal	February 2018
Spatial and temporal variation in historic fire regimes in subalpine forests across the Colorado Front Range in Rocky Mountain National Park, Colorado, USA Sibold, Jason S.; Veblen, Thomas T.; Gonzalez, Mauro E. Journal of Biogeography, Vol. 33, Issue 4 https://doi.org/10.1111/j.1365-2699.2005.01404.x	journal	April 2006
Toward a more ecologically informed view of severe forest fires Hutto, Richard L.; Keane, Robert E.; Sherriff, Rosemary L. Ecosphere, Vol. 7, Issue 2 https://doi.org/10.1002/ecs2.1255	journal	February 2016
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database Chaumeil, Pierre-Alain; Mussig, Aaron J.; Hugenholtz, Philip Bioinformatics https://doi.org/10.1093/bioinformatics/btz848	journal	November 2019
CANT-HYD: A Curated Database of Phylogeny-Derived Hidden Markov Models for Annotation of Marker Genes Involved in Hydrocarbon Degradation Khot, Varada; Zorz, Jackie; Gittins, Daniel A. Frontiers in Microbiology, Vol. 12 https://doi.org/10.3389/fmicb.2021.764058	journal	January 2022
Wildfire-induced alterations of topsoil organic matter and their recovery in Mediterranean eucalypt stands detected with biogeochemical markers: Forest fire effects on topsoil extractable lipid biomarkers Faria, S. R.; De La Rosa, J. M.; Knicker, H. European Journal of Soil Science, Vol. 66, Issue 4 https://doi.org/10.1111/ejss.12254	journal	April 2015
Living on the edge: trailing edge forests at risk of fire‐facilitated conversion to non‐forest Parks, Sean A.; Dobrowski, Solomon Z.; Shaw, John D. Ecosphere, Vol. 10, Issue 3 https://doi.org/10.1002/ecs2.2651	journal	March 2019
Defining trait-based microbial strategies with consequences for soil carbon cycling under climate change Malik, Ashish A.; Martiny, Jennifer B. H.; Brodie, Eoin L. The ISME Journal, Vol. 14, Issue 1 https://doi.org/10.1038/s41396-019-0510-0	journal	September 2019
Rapid recovery of soil bacterial communities after wildfire in a Chinese boreal forest Xiang, Xingjia; Shi, Yu; Yang, Jian Scientific Reports, Vol. 4, Issue 1 https://doi.org/10.1038/srep03829	journal	January 2014
DRAM for distilling microbial metabolism to automate the curation of microbiome function Shaffer, Michael; Borton, Mikayla A.; McGivern, Bridget B. Nucleic Acids Research, Vol. 48, Issue 16 https://doi.org/10.1093/nar/gkaa621	journal	August 2020
dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication Olm, Matthew R.; Brown, Christopher T.; Brooks, Brandon The ISME Journal, Vol. 11, Issue 12 https://doi.org/10.1038/ismej.2017.126	journal	July 2017
Benchmarking Community-Wide Estimates of Growth Potential from Metagenomes Using Codon Usage Statistics Weissman, J. L.; Peras, Marie; Barnum, Tyler P. mSystems, Vol. 7, Issue 5 https://doi.org/10.1128/msystems.00745-22	journal	October 2022
The Forest Soil of the Douglas Fir Region, and Changes Wrought Upon it by Logging and Slash Burning Isaac, Leo A.; Hopkins, Howard G. Ecology, Vol. 18, Issue 2 https://doi.org/10.2307/1930465	journal	April 1937
Pile burning creates a fifty-year legacy of openings in regenerating lodgepole pine forests in Colorado Rhoades, Charles C.; Fornwalt, Paula J. Forest Ecology and Management, Vol. 336 https://doi.org/10.1016/j.foreco.2014.10.011	journal	January 2015
Multivariate dispersion as a measure of beta diversity Anderson, Marti J.; Ellingsen, Kari E.; McArdle, Brian H. Ecology Letters, Vol. 9, Issue 6 https://doi.org/10.1111/j.1461-0248.2006.00926.x	journal	June 2006
Nitrogen speciation and transformations in fire-derived organic matter Torres-Rojas, Dorisel; Hestrin, Rachel; Solomon, Dawit Geochimica et Cosmochimica Acta, Vol. 276 https://doi.org/10.1016/j.gca.2020.02.034	journal	May 2020
Soil organic nitrogen mineralization across a global latitudinal gradient: NITROGEN MINERALIZATION VERSUS LATITUDE Jones, D. L.; Kielland, K.; Sinclair, F. L. Global Biogeochemical Cycles, Vol. 23, Issue 1 https://doi.org/10.1029/2008GB003250	journal	March 2009
Soil heating during burning of forest slash piles and wood piles Busse, Matt D.; Shestak, Carol J.; Hubbert, Ken R. International Journal of Wildland Fire, Vol. 22, Issue 6 https://doi.org/10.1071/WF12179	journal	January 2013
High‐severity wildfire leads to multi‐decadal impacts on soil biogeochemistry in mixed‐conifer forests Dove, Nicholas C.; Safford, Hugh D.; Bohlman, Gabrielle N. Ecological Applications, Vol. 30, Issue 4 https://doi.org/10.1002/eap.2072	journal	February 2020
Post-disturbance reorganization of forest ecosystems in a changing world Seidl, Rupert; Turner, Monica G. Proceedings of the National Academy of Sciences, Vol. 119, Issue 28 https://doi.org/10.1073/pnas.2202190119	journal	July 2022
Deforestation fosters bacterial diversity and the cyanobacterial community responsible for carbon fixation processes under semiarid climate: a metaproteomics study Bastida, Felipe; García, Carlos; von Bergen, Martin Applied Soil Ecology, Vol. 93 https://doi.org/10.1016/j.apsoil.2015.04.006	journal	September 2015
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 Love, Michael I.; Huber, Wolfgang; Anders, Simon Genome Biology, Vol. 15, Issue 12 https://doi.org/10.1186/s13059-014-0550-8	journal	December 2014
Metagenomic and chemical characterization of soil cobalamin production Lu, Xinda; Heal, Katherine R.; Ingalls, Anitra E. The ISME Journal, Vol. 14, Issue 1 https://doi.org/10.1038/s41396-019-0502-0	journal	September 2019
Slash Burning McCulloch, W. F. The Forestry Chronicle, Vol. 20, Issue 2 https://doi.org/10.5558/tfc20111-2	journal	June 1944
Protein breakdown represents a major bottleneck in nitrogen cycling in grassland soils Jan, M. T.; Roberts, P.; Tonheim, S. K. Soil Biology and Biochemistry, Vol. 41, Issue 11 https://doi.org/10.1016/j.soilbio.2009.08.013	journal	November 2009
Wildfires and climate change push low-elevation forests across a critical climate threshold for tree regeneration Davis, Kimberley T.; Dobrowski, Solomon Z.; Higuera, Philip E. Proceedings of the National Academy of Sciences, Vol. 116, Issue 13 https://doi.org/10.1073/pnas.1815107116	journal	March 2019
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 Bolyen, Evan; Rideout, Jai Ram; Dillon, Matthew R. Nature Biotechnology, Vol. 37, Issue 8 https://doi.org/10.1038/s41587-019-0209-9	journal	July 2019
Rapid bacterial and fungal successional dynamics in first year after chaparral wildfire Pulido‐Chavez, M. Fabiola; Randolph, James W. J.; Zalman, Cassandra Molecular Ecology, Vol. 32, Issue 7 https://doi.org/10.1111/mec.16835	journal	January 2023
MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets Steinegger, Martin; Söding, Johannes Nature Biotechnology, Vol. 35, Issue 11 https://doi.org/10.1038/nbt.3988	journal	October 2017
Interval squeeze: altered fire regimes and demographic responses interact to threaten woody species persistence as climate changes Enright, Neal J.; Fontaine, Joseph B.; Bowman, David MJS Frontiers in Ecology and the Environment, Vol. 13, Issue 5 https://doi.org/10.1890/140231	journal	June 2015
Ecological Assembly Processes Are Coordinated between Bacterial and Viral Communities in Fractured Shale Ecosystems Danczak, R. E.; Daly, R. A.; Borton, M. A. mSystems, Vol. 5, Issue 2 https://doi.org/10.1128/mSystems.00098-20	journal	March 2020
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data McMurdie, Paul J.; Holmes, Susan PLoS ONE, Vol. 8, Issue 4 https://doi.org/10.1371/journal.pone.0061217	journal	April 2013
Abundant culturable diazotrophs within Actinomycetia rather than rare taxa are underlying inoculants for nitrogen promotion in desert soil Miao, Lin; Qiao, Yangui; Bai, Yuxuan Applied Soil Ecology, Vol. 184 https://doi.org/10.1016/j.apsoil.2022.104774	journal	April 2023
Rhizosphere carbon flow in trees, in comparison with annual plants: the importance of root exudation and its impact on microbial activity and nutrient availability Grayston, S. J.; Vaughan, D.; Jones, D. Applied Soil Ecology, Vol. 5, Issue 1 https://doi.org/10.1016/S0929-1393(96)00126-6	journal	January 1997
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph Li, Dinghua; Liu, Chi-Man; Luo, Ruibang Bioinformatics, Vol. 31, Issue 10 https://doi.org/10.1093/bioinformatics/btv033	journal	January 2015
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools Quast, Christian; Pruesse, Elmar; Yilmaz, Pelin Nucleic Acids Research, Vol. 41, Issue D1 https://doi.org/10.1093/nar/gks1219	journal	November 2012
A changing climate is snuffing out post‐fire recovery in montane forests Rodman, Kyle C.; Veblen, Thomas T.; Battaglia, Mike A. Global Ecology and Biogeography, Vol. 29, Issue 11 https://doi.org/10.1111/geb.13174	journal	August 2020
Estimating and mapping ecological processes influencing microbial community assembly Stegen, James C.; Lin, Xueju; Fredrickson, Jim K. Frontiers in Microbiology, Vol. 6 https://doi.org/10.3389/fmicb.2015.00370	journal	May 2015
Fire alters plant microbiome assembly patterns: integrating the plant and soil microbial response to disturbance Dove, Nicholas C.; Klingeman, Dawn M.; Carrell, Alyssa A. New Phytologist, Vol. 230, Issue 6 https://doi.org/10.1111/nph.17248	journal	March 2021
High-Coverage ITS Primers for the DNA-Based Identification of Ascomycetes and Basidiomycetes in Environmental Samples Toju, Hirokazu; Tanabe, Akifumi S.; Yamamoto, Satoshi PLoS ONE, Vol. 7, Issue 7 https://doi.org/10.1371/journal.pone.0040863	journal	July 2012
FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild Nguyen, Nhu H.; Song, Zewei; Bates, Scott T. Fungal Ecology, Vol. 20 https://doi.org/10.1016/j.funeco.2015.06.006	journal	April 2016
Molecular investigations into a globally important carbon pool: permafrost-protected carbon in Alaskan soils Waldrop, M. P.; Wickland, K. P.; White Iii, R. Global Change Biology https://doi.org/10.1111/j.1365-2486.2009.02141.x	journal	February 2010
Ectomycorrhizal fungal spore bank recovery after a severe forest fire: some like it hot Glassman, Sydney I.; Levine, Carrie R.; DiRocco, Angela M. The ISME Journal, Vol. 10, Issue 5 https://doi.org/10.1038/ismej.2015.182	journal	October 2015
Are soil changes responsible for persistent slash pile burn scars in lodgepole pine forests? Rhoades, Charles C.; Fegel, Timothy S.; Zaman, Tahir Forest Ecology and Management, Vol. 490 https://doi.org/10.1016/j.foreco.2021.119090	journal	June 2021
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms Caporaso, J. Gregory; Lauber, Christian L.; Walters, William A. The ISME Journal, Vol. 6, Issue 8 https://doi.org/10.1038/ismej.2012.8	journal	March 2012
A continental view of pine-associated ectomycorrhizal fungal spore banks: a quiescent functional guild with a strong biogeographic pattern Glassman, Sydney I.; Peay, Kabir G.; Talbot, Jennifer M. New Phytologist, Vol. 205, Issue 4 https://doi.org/10.1111/nph.13240	journal	January 2015
Did the 2002 Hayman Fire, Colorado, USA, Burn with Uncharacteristic Severity? Fornwalt, Paula J.; Huckaby, Laurie S.; Alton, Steven K. Fire Ecology, Vol. 12, Issue 3 https://doi.org/10.4996/fireecology.1203117	journal	December 2016
Ecological and genomic responses of soil microbiomes to high-severity wildfire: linking community assembly to functional potential Dove, Nicholas C.; Taş, Neslihan; Hart, Stephen C. The ISME Journal, Vol. 16, Issue 7 https://doi.org/10.1038/s41396-022-01232-9	journal	April 2022
Quantifying community assembly processes and identifying features that impose them Stegen, James C.; Lin, Xueju; Fredrickson, Jim K. The ISME Journal, Vol. 7, Issue 11 https://doi.org/10.1038/ismej.2013.93	journal	June 2013
Predicting the responsiveness of soil biodiversity to deforestation: a cross-biome study Crowther, Thomas W.; Maynard, Daniel S.; Leff, Jonathan W. Global Change Biology, Vol. 20, Issue 9 https://doi.org/10.1111/gcb.12565	journal	April 2014
Fast gapped-read alignment with Bowtie 2 Langmead, Ben; Salzberg, Steven L. Nature Methods, Vol. 9, Issue 4 https://doi.org/10.1038/nmeth.1923	journal	March 2012
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes Parks, Donovan H.; Imelfort, Michael; Skennerton, Connor T. Genome Research, Vol. 25, Issue 7 https://doi.org/10.1101/gr.186072.114	journal	May 2015
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea Bowers, Robert M.; Kyrpides, Nikos C.; Stepanauskas, Ramunas Nature Biotechnology, Vol. 35, Issue 8 https://doi.org/10.1038/nbt.3893	journal	August 2017
Mega‐fire in redwood tanoak forest reduces bacterial and fungal richness and selects for pyrophilous taxa that are phylogenetically conserved Enright, Dylan J.; Frangioso, Kerri M.; Isobe, Kazuo Molecular Ecology, Vol. 31, Issue 8 https://doi.org/10.1111/mec.16399	journal	March 2022
Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession Dini-Andreote, Francisco; Stegen, James C.; van Elsas, Jan Dirk Proceedings of the National Academy of Sciences, Vol. 112, Issue 11 https://doi.org/10.1073/pnas.1414261112	journal	March 2015
Distinct fungal and bacterial responses to fire severity and soil depth across a ten-year wildfire chronosequence in beetle-killed lodgepole pine forests Caiafa, Marcos V.; Nelson, Amelia R.; Borch, Thomas Forest Ecology and Management, Vol. 544 https://doi.org/10.1016/j.foreco.2023.121160	journal	September 2023
Microbial community structure and activity in a Colorado Rocky Mountain forest soil scarred by slash pile burning Jiménez Esquilín, Aida E.; Stromberger, Mary E.; Massman, William J. Soil Biology and Biochemistry, Vol. 39, Issue 5 https://doi.org/10.1016/j.soilbio.2006.12.020	journal	May 2007
Resistance, resilience, and redundancy in microbial communities Allison, S. D.; Martiny, J. B. H. Proceedings of the National Academy of Sciences, Vol. 105, Issue Supplement 1 https://doi.org/10.1073/pnas.0801925105	journal	August 2008
Embracing the unknown: disentangling the complexities of the soil microbiome Fierer, Noah Nature Reviews Microbiology, Vol. 15, Issue 10 https://doi.org/10.1038/nrmicro.2017.87	journal	August 2017
Wildfire-dependent changes in soil microbiome diversity and function Nelson, Amelia R.; Narrowe, Adrienne B.; Rhoades, Charles C. Nature Microbiology, Vol. 7, Issue 9 https://doi.org/10.1038/s41564-022-01203-y	journal	August 2022
Soil bacterial and fungal response to wildfires in the Canadian boreal forest across a burn severity gradient Whitman, Thea; Whitman, Ellen; Woolet, Jamie Soil Biology and Biochemistry, Vol. 138 https://doi.org/10.1016/j.soilbio.2019.107571	journal	November 2019
Mycorrhizal ecology and evolution: the past, the present, and the future van der Heijden, Marcel G. A.; Martin, Francis M.; Selosse, Marc-André New Phytologist, Vol. 205, Issue 4 https://doi.org/10.1111/nph.13288	journal	February 2015
Linkages between denitrification and dissolved organic matter quality, Boulder Creek watershed, Colorado: DENITRIFICATION AND DOM QUALITY Barnes, Rebecca T.; Smith, Richard L.; Aiken, George R. Journal of Geophysical Research: Biogeosciences, Vol. 117, Issue G1 https://doi.org/10.1029/2011JG001749	journal	February 2012
The global soil community and its influence on biogeochemistry Crowther, T. W.; van den Hoogen, J.; Wan, J. Science, Vol. 365, Issue 6455 https://doi.org/10.1126/science.aav0550	journal	August 2019
Soil biota, ecosystem services and land productivity Barrios, Edmundo Ecological Economics, Vol. 64, Issue 2 https://doi.org/10.1016/j.ecolecon.2007.03.004	journal	December 2007
A comparison of methods to determine the biodegradable dissolved organic carbon from different terrestrial sources McDowell, W. H.; Zsolnay, A.; Aitkenhead-Peterson, J. A. Soil Biology and Biochemistry, Vol. 38, Issue 7 https://doi.org/10.1016/j.soilbio.2005.12.018	journal	July 2006
Proven and potential involvement of vitamins in interactions of plants with plant growth-promoting bacteria—an overview Palacios, Oskar A.; Bashan, Yoav; de-Bashan, Luz E. Biology and Fertility of Soils, Vol. 50, Issue 3 https://doi.org/10.1007/s00374-013-0894-3	journal	January 2014
The effects of heat treatments on ectomycorrhizal resistant propagules and their ability to colonize bioassay seedlings Izzo, Antonio; Canright, Megan; Bruns, Thomas D. Mycological Research, Vol. 110, Issue 2 https://doi.org/10.1016/j.mycres.2005.08.010	journal	February 2006
Stochastic Community Assembly: Does It Matter in Microbial Ecology? Zhou, Jizhong; Ning, Daliang Microbiology and Molecular Biology Reviews, Vol. 81, Issue 4 https://doi.org/10.1128/MMBR.00002-17	journal	October 2017
Prodigal: prokaryotic gene recognition and translation initiation site identification Hyatt, Doug; Chen, Gwo-Liang; LoCascio, Philip F. BMC Bioinformatics, Vol. 11, Issue 1 https://doi.org/10.1186/1471-2105-11-119	journal	March 2010
Soil as a Habitat of Vitamin-requiring Bacteria Lochhead, A. G.; Burton, Margaret O. Nature, Vol. 178, Issue 4525 https://doi.org/10.1038/178144a0	journal	July 1956
Accelerated Profile HMM Searches Eddy, Sean R. PLoS Computational Biology, Vol. 7, Issue 10 https://doi.org/10.1371/journal.pcbi.1002195	journal	October 2011

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