Title: De novo genome assembly and pan-genome analysis of the fast-growing Indian isolates of Synechococcus elongatus: Potential chassis for bioproduction

Journal Article · · The Microbe

Not Available

Sponsoring Organization:
USDOE
Grant/Contract Number:
FG02-02ER63445
OSTI ID:
2327064
Journal Information:
The Microbe, Journal Name: The Microbe Journal Issue: C Vol. 2; ISSN 2950-1946
Publisher:
ElsevierCopyright Statement
Country of Publication:
Country unknown/Code not available
Language:
English

References (48)

Metabolic engineering of Synechococcus elongatus for photoautotrophic production of mannitol journal June 2023
Annotation and Classification of CRISPR-Cas Systems book January 2015
Cyanobacterial chassis engineering for enhancing production of biofuels and chemicals journal February 2016
A global analysis of adaptive evolution of operons in cyanobacteria journal September 2012
An improved method for genomic DNA extraction from cyanobacteria journal September 2010
Metabolic engineering of cyanobacteria for photoautotrophic production of heparosan, a pharmaceutical precursor of heparin journal January 2019
Progressive transitional studies of engineered Synechococcus from laboratory to outdoor pilot-scale cultivation for production of ethylene journal December 2021
Transporter engineering for the development of cyanobacteria as cell factories: A text analytics guided survey journal January 2022
Cyanobacterial metabolic engineering for biofuel and chemical production journal December 2016
The role of systems biology in developing non-model cyanobacteria as hosts for chemical production journal August 2020
Cyanobacteria as cell factories: the roles of host and pathway engineering and translational research journal February 2022
Adaptive laboratory evolution of the fast-growing cyanobacterium Synechococcus elongatus PCC 11801 for improved solvent tolerance journal May 2021
Improved production of echinenone and canthaxanthin in transgenic Nostoc sp. PCC 7120 overexpressing a heterologous crtO gene from Nostoc flagelliforme journal June 2020
Bio-conversion of CO2 into biofuels and other value-added chemicals via metabolic engineering journal October 2021
Tolerance engineering in bacteria for the production of advanced biofuels and chemicals journal August 2015
Metabolic engineering tools in model cyanobacteria journal November 2018
Global Transcriptome-Guided Identification of Neutral Sites for Engineering Synechococcus elongatus PCC 11801 journal May 2023
Genome Features and Biochemical Characteristics of a Robust, Fast Growing and Naturally Transformable Cyanobacterium Synechococcus elongatus PCC 11801 Isolated from India journal November 2018
A Novel Cyanobacterium Synechococcus elongatus PCC 11802 has Distinct Genomic and Metabolomic Characteristics Compared to its Neighbor PCC 11801 journal January 2020
Synechococcus elongatus UTEX 2973, a fast growing cyanobacterial chassis for biosynthesis using light and CO2 journal January 2015
RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes journal February 2015
Engineering photoautotrophic carbon fixation for enhanced growth and productivity journal January 2018
Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing journal December 2012
Biogenesis of Phycobiliproteins journal July 2008
Prokka: rapid prokaryotic genome annotation journal March 2014
Trimmomatic: a flexible trimmer for Illumina sequence data journal April 2014
Roary: rapid large-scale prokaryote pan genome analysis journal July 2015
NanoPack: visualizing and processing long-read sequencing data journal March 2018
High-Throughput Functional Analysis of the Synechococcus elongatus PCC 7942 Genome journal January 2005
MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms journal May 2018
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST) journal November 2013
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses journal November 2018
Complete Genome Structure of the Unicellular Cyanobacterium Synechocystis sp. PCC6803 journal January 1997
An updated classification of cyanobacterial orders and families based on phylogenomic and polyphasic analysis journal January 2023
Isotopically non‐stationary 13C metabolic flux analysis of two closely related fast‐growing cyanobacteria, Synechococcus elongatusPCC 11801 and 11802 journal June 2023
Physical genome map of the unicellular cyanobacterium Synechococcus sp. strain PCC 7002 journal August 1993
The RAST Server: Rapid Annotations using Subsystems Technology journal January 2008
A simple, fast, and accurate method of phylogenomic inference journal January 2008
CRISPR interference (CRISPRi) for gene regulation and succinate production in cyanobacterium S. elongatus PCC 7942 journal November 2016
Circlator: automated circularization of genome assemblies using long sequencing reads journal December 2015
Metabolic engineering of a fast-growing cyanobacterium Synechococcus elongatus PCC 11801 for photoautotrophic production of succinic acid journal May 2020
Increased ethylene production by overexpressing phosphoenolpyruvate carboxylase in the cyanobacterium Synechocystis PCC 6803 journal January 2020
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads journal June 2017
progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement journal June 2010
Inexpensive Multiplexed Library Preparation for Megabase-Sized Genomes journal May 2015
Gene essentiality, conservation index and co-evolution of genes in cyanobacteria journal June 2017
Photosynthetic Co-production of Succinate and Ethylene in a Fast-Growing Cyanobacterium, Synechococcus elongatus PCC 11801 journal June 2020
The enveomics collection: a toolbox for specialized analyses of microbial genomes and metagenomes preprint March 2016