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Title: Reproducible responses of geochemical and microbial successional patterns in the subsurface to carbon source amendment

Journal Article · · Water Research

Not Available

Sponsoring Organization:
USDOE
OSTI ID:
2326252
Journal Information:
Water Research, Journal Name: Water Research Journal Issue: C Vol. 255; ISSN 0043-1354
Publisher:
ElsevierCopyright Statement
Country of Publication:
United Kingdom
Language:
English

References (51)

Microbial functional diversity: From concepts to applications journal September 2019
EasyAmplicon: An easy‐to‐use, open‐source, reproducible, and community‐based pipeline for amplicon data analysis in microbiome research journal January 2023
Environmental proteomics reveals early microbial community responses to biostimulation at a uranium- and nitrate-contaminated site journal August 2013
Microbial community of acetate utilizing denitrifiers in aerobic granules journal September 2009
Characterizing organic carbon dynamics during biostimulation of a uranium contaminated field site journal February 2019
Structural and functional diversity of bacterial community in soil treated with the herbicide napropamide estimated by the DGGE, CLPP and r/K-strategy approaches journal October 2013
Bicarbonate impact on U(VI) bioreduction in a shallow alluvial aquifer journal February 2015
Effects of physical and geochemical heterogeneities on mineral transformation and biomass accumulation during biostimulation experiments at Rifle, Colorado journal March 2010
Mechanism of uranium (VI) removal by two anaerobic bacterial communities journal December 2010
Engineering and kinetic aspects of bacterial uranium reduction for the remediation of uranium contaminated environments journal June 2019
A critical review of uranium contamination in groundwater: Treatment and sludge disposal journal June 2022
Microbial Metagenomics Reveals Climate-Relevant Subsurface Biogeochemical Processes journal August 2016
Total electron acceptor loading and composition affect hexavalent uranium reduction and microbial community structure in a membrane biofilm reactor journal November 2017
High spatiotemporal variability of bacterial diversity over short time scales with unique hydrochemical associations within a shallow aquifer journal November 2019
Temporal Dynamics of In-Field Bioreactor Populations Reflect the Groundwater System and Respond Predictably to Perturbation journal February 2017
Phylogenetic and Functional Biomakers as Indicators of Bacterial Community Responses to Mixed-Waste Contamination journal April 2006
U(VI) Bioreduction with Emulsified Vegetable Oil as the Electron Donor – Model Application to a Field Test journal March 2013
Humic substances as electron acceptors for microbial respiration journal August 1996
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms journal March 2012
Microbial functional trait of rRNA operon copy numbers increases with organic levels in anaerobic digesters journal August 2017
DADA2: High-resolution sample inference from Illumina amplicon data journal May 2016
Exploiting rRNA operon copy number to investigate bacterial reproductive strategies journal September 2016
A quantitative framework reveals ecological drivers of grassland microbial community assembly in response to warming journal September 2020
Nutrient supply controls the linkage between species abundance and ecological interactions in marine bacterial communities journal January 2022
Function and functional redundancy in microbial systems journal April 2018
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 journal July 2019
Stochasticity, succession, and environmental perturbations in a fluidic ecosystem journal February 2014
Evaluation of Slow Release Substrates for Anaerobic Bioremediation journal July 2006
FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix journal April 2009
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability journal January 2013
Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation journal April 2021
Disturbed subsurface microbial communities follow equivalent trajectories despite different structural starting points: Microbial community succession and disturbance journal April 2014
Network succession reveals the importance of competition in response to emulsified vegetable oil amendment for uranium bioremediation: Competition in bioremediation system journal August 2015
Sustained Ability of a Natural Microbial Community to Remove Nitrate from Groundwater journal September 2021
Ecophysiology of syntrophic communities that degrade saturated and unsaturated long-chain fatty acids: Ecophysiology of syntrophic LCFA degradation journal June 2009
Dynamic Succession of Groundwater Functional Microbial Communities in Response to Emulsified Vegetable Oil Amendment during Sustained In Situ U(VI) Reduction journal April 2015
Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy journal June 2007
A Limited Microbial Consortium Is Responsible for Extended Bioreduction of Uranium in a Contaminated Aquifer journal July 2011
Molybdenum Availability Is Key to Nitrate Removal in Contaminated Groundwater Environments journal May 2015
Bacterial Community Shift and Coexisting/Coexcluding Patterns Revealed by Network Analysis in a Uranium-Contaminated Site after Bioreduction Followed by Reoxidation journal February 2018
Stimulating the In Situ Activity of Geobacter Species To Remove Uranium from the Groundwater of a Uranium-Contaminated Aquifer journal October 2003
Stochastic Community Assembly: Does It Matter in Microbial Ecology? journal October 2017
DNA recovery from soils of diverse composition. journal January 1996
Natural Bacterial Communities Serve as Quantitative Geochemical Biosensors journal May 2015
High-Throughput Metagenomic Technologies for Complex Microbial Community Analysis: Open and Closed Formats journal January 2015
Uranium Reduction journal October 2006
A simple procedure for the comparison of covariance matrices journal January 2012
Phasing amplicon sequencing on Illumina Miseq for robust environmental microbial community analysis journal June 2015
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data journal April 2013
Acridine Orange-Epifluorescence Technique for Counting Bacteria in Natural Waters
  • Francisco, Donald E.; Mah, Robert A.; Rabin, Albert C.
  • Transactions of the American Microscopical Society, Vol. 92, Issue 3 https://doi.org/10.2307/3225245
journal July 1973
Mechanism Across Scales: A Holistic Modeling Framework Integrating Laboratory and Field Studies for Microbial Ecology journal March 2021