Discovery and structural characterization of the D-box, a conserved TonB motif that couples an inner-membrane motor to outer-membrane transport

Loll, Patrick J.; Grasty, Kimberly C.; Shultis, David D.; Guzman, Nicholas J.; Wiener, Michael C.

doi:10.1016/j.jbc.2024.105723

Title: Discovery and structural characterization of the D-box, a conserved TonB motif that couples an inner-membrane motor to outer-membrane transport

Journal Article · 29 February 2024 · Journal of Biological Chemistry

DOI: https://doi.org/10.1016/j.jbc.2024.105723 · OSTI ID:2318755

Loll, Patrick J.;

; Shultis, David D.; Guzman, Nicholas J.; Wiener, Michael C.

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Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

Grant/Contract Number:: AC02-06CH11357; SC0012704

OSTI ID:: 2318755

Journal Information:: Journal of Biological Chemistry, Journal Name: Journal of Biological Chemistry Journal Issue: 3 Vol. 300; ISSN 0021-9258

Publisher:: ElsevierCopyright Statement

Country of Publication:: United States

Language:: English

References (45)

Conserved Residues Ser16 and His20 and Their Relative Positioning Are Essential for TonB Activity, Cross-linking of TonB with ExbB, and the Ability of TonB to Respond to Proton Motive Force Larsen, Ray A.; Postle, Kathleen Journal of Biological Chemistry, Vol. 276, Issue 11 https://doi.org/10.1074/jbc.M007479200	journal	March 2001
Ton motor conformational switch and peptidoglycan role in bacterial nutrient uptake Zinke, Maximilian; Lejeune, Maylis; Mechaly, Ariel Nature Communications, Vol. 15, Issue 1 https://doi.org/10.1038/s41467-023-44606-z	journal	January 2024
Features and development of Coot Emsley, P.; Lohkamp, B.; Scott, W. G. Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 4 https://doi.org/10.1107/S0907444910007493	journal	March 2010
Protonmotive force, ExbB and ligand‐bound FepA drive conformational changes in TonB Larsen, Ray A.; Thomas, Michael G.; Postle, Kathleen Molecular Microbiology, Vol. 31, Issue 6 https://doi.org/10.1046/j.1365-2958.1999.01317.x	journal	April 1999
Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega Sievers, Fabian; Wilm, Andreas; Dineen, David Molecular Systems Biology, Vol. 7, Issue 1 https://doi.org/10.1038/msb.2011.75	journal	January 2011
Structures of the stator complex that drives rotation of the bacterial flagellum Deme, Justin C.; Johnson, Steven; Vickery, Owen Nature Microbiology, Vol. 5, Issue 12 https://doi.org/10.1038/s41564-020-0788-8	journal	September 2020
A new class of biological ion-driven rotary molecular motors with 5:2 symmetry Rieu, Martin; Krutyholowa, Roscislaw; Taylor, Nicholas M. I. Frontiers in Microbiology, Vol. 13 https://doi.org/10.3389/fmicb.2022.948383	journal	August 2022
Federal Funding for the Study of Antimicrobial Resistance in Nosocomial Pathogens: No ESKAPE Rice, Louis B. The Journal of Infectious Diseases, Vol. 197, Issue 8 https://doi.org/10.1086/533452	journal	April 2008
TonB-Dependent Transport Across the Bacterial Outer Membrane Silale, Augustinas; van den Berg, Bert Annual Review of Microbiology, Vol. 77, Issue 1 https://doi.org/10.1146/annurev-micro-032421-111116	journal	September 2023
Touch and go: tying TonB to transport Postle, Kathleen; Kadner, Robert J. Molecular Microbiology, Vol. 49, Issue 4 https://doi.org/10.1046/j.1365-2958.2003.03629.x	journal	July 2003
Energy-coupled transport across the outer membrane of Escherichia coli: ExbB binds ExbD and TonB in vitro, and leucine 132 in the periplasmic region and aspartate 25 in the transmembrane region are important for ExbD activity Braun, V.; Gaisser, S.; Herrmann, C. Journal of Bacteriology, Vol. 178, Issue 10 https://doi.org/10.1128/jb.178.10.2836-2845.1996	journal	May 1996
Energization of Outer Membrane Transport by the ExbB ExbD Molecular Motor Braun, Volkmar; Ratliff, Anna C.; Celia, Herve Journal of Bacteriology, Vol. 205, Issue 6 https://doi.org/10.1128/jb.00035-23	journal	June 2023
Phaser crystallographic software McCoy, Airlie J.; Grosse-Kunstleve, Ralf W.; Adams, Paul D. Journal of Applied Crystallography, Vol. 40, Issue 4 https://doi.org/10.1107/S0021889807021206	journal	July 2007
Linking Crystallographic Model and Data Quality Karplus, P. A.; Diederichs, K. Science, Vol. 336, Issue 6084 https://doi.org/10.1126/science.1218231	journal	May 2012
Porins and specific diffusion channels in bacterial outer membranes. Nikaido, H. Journal of Biological Chemistry, Vol. 269, Issue 6 https://doi.org/10.1016/S0021-9258(17)41716-9	journal	February 1994
Fixed-Bed Uncoated Charcoal Hemoperfusion in the Treatment of Intoxications: Animal and Patient Studies de Torrente, Antoine; Rumack, Barry H.; Blair, Doyce T. Nephron https://doi.org/10.1159/000081697	book	December 2008
Sequence‐imposed structural constraints in the TonB protein of E. coli Evans, J. S.; Levine, B. A.; Trayer, I. P. FEBS Letters, Vol. 208, Issue 2 https://doi.org/10.1016/0014-5793(86)81020-1	journal	November 1986
The proline‐rich domain of TonB possesses an extended polyproline II‐like conformation of sufficient length to span the periplasm of Gram‐negative bacteria Domingo Köhler, Silvia; Weber, Annemarie; Howard, S. Peter Protein Science, Vol. 19, Issue 4 https://doi.org/10.1002/pro.345	journal	March 2010
XDS Kabsch, Wolfgang Acta Crystallographica Section D Biological Crystallography, Vol. 66, Issue 2 https://doi.org/10.1107/S0907444909047337	journal	January 2010
Interactions of the Energy Transducer TonB with Noncognate Energy-Harvesting Complexes Brinkman, Kerry K.; Larsen, Ray A. Journal of Bacteriology, Vol. 190, Issue 1 https://doi.org/10.1128/JB.01093-07	journal	January 2008
Improved R-factors for diffraction data analysis in macromolecular crystallography Diederichs, Kay; Karplus, P. Andrew Nature Structural Biology, Vol. 4, Issue 4 https://doi.org/10.1038/nsb0497-269	journal	April 1997
Structure and Function of the Escherichia coli Tol-Pal Stator Protein TolR Wojdyla, Justyna A.; Cutts, Erin; Kaminska, Renata Journal of Biological Chemistry, Vol. 290, Issue 44 https://doi.org/10.1074/jbc.M115.671586	journal	October 2015
Mutational Analysis of theEscherichia coliK-12 TolA N-Terminal Region and Characterization of Its TolQ-Interacting Domain by Genetic Suppression Germon, Pierre; Clavel, Thierry; Vianney, Anne Journal of Bacteriology, Vol. 180, Issue 24 https://doi.org/10.1128/JB.180.24.6433-6439.1998	journal	December 1998
Evolutionary relationship of uptake systems for biopolymers in Escherichia coli: cross‐complementation between the TonB‐ExbB‐ExbD and the TolA‐TolQ‐TolR proteins Braun, V.; Herrmann, C. Molecular Microbiology, Vol. 8, Issue 2 https://doi.org/10.1111/j.1365-2958.1993.tb01570.x	journal	April 1993
Structure and function of X-Pro dipeptide repeats in the TonB proteins of Salmonella typhimurium and Escherichia coli Brewer, S.; Tolley, M.; Trayer, I. P. Journal of Molecular Biology, Vol. 216, Issue 4 https://doi.org/10.1016/S0022-2836(99)80008-4	journal	December 1990
Cryo-EM structure of the bacterial Ton motor subcomplex ExbB–ExbD provides information on structure and stoichiometry Celia, Herve; Botos, Istvan; Ni, Xiaodan Communications Biology, Vol. 2, Issue 1 https://doi.org/10.1038/s42003-019-0604-2	journal	October 2019
Role of the TonB amino terminus in energy transduction between membranes Jaskula, J. C.; Letain, T. E.; Roof, S. K. Journal of Bacteriology, Vol. 176, Issue 8 https://doi.org/10.1128/jb.176.8.2326-2338.1994	journal	April 1994
Ligation independent cloning vectors for expression of SUMO fusions Weeks, Stephen D.; Drinker, Mark; Loll, Patrick J. Protein Expression and Purification, Vol. 53, Issue 1 https://doi.org/10.1016/j.pep.2006.12.006	journal	May 2007
Outer Membrane Active Transport: Structure of the BtuB:TonB Complex Shultis, D. D.; Purdy, M. D.; Banchs, C. N. Science, Vol. 312, Issue 5778 https://doi.org/10.1126/science.1127694	journal	June 2006
Global indicators of X-ray data quality Weiss, Manfred S. Journal of Applied Crystallography, Vol. 34, Issue 2 https://doi.org/10.1107/S0021889800018227	journal	April 2001
Discovery, research, and development of new antibiotics: the WHO priority list of antibiotic-resistant bacteria and tuberculosis Tacconelli, Evelina; Carrara, Elena; Savoldi, Alessia The Lancet Infectious Diseases, Vol. 18, Issue 3 https://doi.org/10.1016/S1473-3099(17)30753-3	journal	March 2018
The PSIPRED protein structure prediction server McGuffin, L. J.; Bryson, K.; Jones, D. T. Bioinformatics, Vol. 16, Issue 4 https://doi.org/10.1093/bioinformatics/16.4.404	journal	April 2000
Structural insight into the role of the Ton complex in energy transduction Celia, Hervé; Noinaj, Nicholas; Zakharov, Stanislav D. Nature, Vol. 538, Issue 7623 https://doi.org/10.1038/nature19757	journal	September 2016
JCat: a novel tool to adapt codon usage of a target gene to its potential expression host Grote, A.; Hiller, K.; Scheer, M. Nucleic Acids Research, Vol. 33, Issue Web Server https://doi.org/10.1093/nar/gki376	journal	July 2005
TonB-Dependent Transporters: Regulation, Structure, and Function Noinaj, Nicholas; Guillier, Maude; Barnard,, Travis J. Annual Review of Microbiology, Vol. 64, Issue 1 https://doi.org/10.1146/annurev.micro.112408.134247	journal	October 2010
Structure of TonB in Complex with FhuA, E. coli Outer Membrane Receptor Pawelek, Peter D.; Croteau, Nathalie; Ng-Thow-Hing, Christopher Science, Vol. 312, Issue 5778 https://doi.org/10.1126/science.1128057	journal	June 2006
Decision-making in structure solution using Bayesian estimates of map quality: the PHENIX AutoSol wizard Terwilliger, Thomas C.; Adams, Paul D.; Read, Randy J. Acta Crystallographica Section D Biological Crystallography, Vol. 65, Issue 6 https://doi.org/10.1107/S0907444909012098	journal	May 2009
Towards automated crystallographic structure refinement with phenix.refine Afonine, Pavel V.; Grosse-Kunstleve, Ralf W.; Echols, Nathaniel Acta Crystallographica Section D Biological Crystallography, Vol. 68, Issue 4 https://doi.org/10.1107/S0907444912001308	journal	March 2012
The role of oil in macromolecular crystallization Chayen, Naomi E. Structure, Vol. 5, Issue 10 https://doi.org/10.1016/S0969-2126(97)00279-7	journal	October 1997
The solution structure of the periplasmic domain of the TonB system ExbD protein reveals an unexpected structural homology with siderophore-binding proteins Garcia-Herrero, Alicia; Peacock, R. Sean; Howard, S. Peter Molecular Microbiology, Vol. 66, Issue 4 https://doi.org/10.1111/j.1365-2958.2007.05957.x	journal	November 2007
Tunable force transduction through the Escherichia coli cell envelope Williams-Jones, Daniel P.; Webby, Melissa N.; Press, Cara E. Proceedings of the National Academy of Sciences, Vol. 120, Issue 47 https://doi.org/10.1073/pnas.2306707120	journal	November 2023
A general method applicable to the search for similarities in the amino acid sequence of two proteins Needleman, Saul B.; Wunsch, Christian D. Journal of Molecular Biology, Vol. 48, Issue 3, p. 443-453 https://doi.org/10.1016/0022-2836(70)90057-4	journal	March 1970
A sequence‐specific function for the N‐terminal signal‐like sequence of the TonB protein Karlsson, Margareta; Hannavy, Kevin; Higgins, Christopher F. Molecular Microbiology, Vol. 8, Issue 2 https://doi.org/10.1111/j.1365-2958.1993.tb01581.x	journal	April 1993
A novel approach to crystallising proteins under oil D'Arcy, A.; Elmore, C.; Stihle, M. Journal of Crystal Growth, Vol. 168, Issue 1-4 https://doi.org/10.1016/0022-0248(96)00351-X	journal	October 1996
Partial suppression of an Escherichia coli TonB transmembrane domain mutation (ΔV17) by a missense mutation in ExbB Larsen, Ray A.; Thomas, Michael G.; Wood, Gwendolyn E. Molecular Microbiology, Vol. 13, Issue 4 https://doi.org/10.1111/j.1365-2958.1994.tb00457.x	journal	August 1994

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