IMA genome-F18

Visagie, Cobus M.; Magistà, Donato; Ferrara, Massimo; Balocchi, Felipe; Duong, Tuan A.; Eichmeier, Ales; Gramaje, David; Aylward, Janneke; Baker, Scott E.; Barnes, Irene; Calhoun, Sara; De Angelis, Maria; Frisvad, Jens C.; Hakalova, Eliska; Hayes, Richard D.; Houbraken, Jos; Grigoriev, Igor V.; LaButti, Kurt; Leal, Catarina; Lipzen, Anna; Ng, Vivian; Pangilinan, Jasmyn; Pecenka, Jakub; Perrone, Giancarlo; Piso, Anja; Savage, Emily; Spetik, Milan; Wingfield, Michael J.; Zhang, Yu; Wingfield, Brenda D.

doi:10.1186/s43008-023-00121-w

Title: IMA genome-F18

Journal Article · 06 October 2023 · IMA Fungus

DOI: https://doi.org/10.1186/s43008-023-00121-w · OSTI ID:2301563

Visagie, Cobus M. ^[1]; Magistà, Donato ^[2]; Ferrara, Massimo ^[2]; Balocchi, Felipe ^[1]; Duong, Tuan A. ^[1]; Eichmeier, Ales ^[3]; Gramaje, David ^[3]; Aylward, Janneke ^[4];

^[5]; Barnes, Irene ^[1]; Calhoun, Sara ^[6]; De Angelis, Maria ^[7]; Frisvad, Jens C. ^[8]; Hakalova, Eliska ^[9]; Hayes, Richard D. ^[6]; Houbraken, Jos ^[10]; Grigoriev, Igor V. ^[11]; LaButti, Kurt ^[6]; Leal, Catarina ^[3]; Lipzen, Anna ^[6] more »

University of Pretoria (South Africa)
National Research Council (CNR), Bari (Italy)
Universidad de la Rioja, Logrono (Spain)
University of Pretoria (South Africa); Stellenbosch University (South Africa)
Pacific Northwest National Laboratory (PNNL), Richland, WA (United States); Joint BioEnergy Institute (JBEI), Emeryville, CA (United States)
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States). Joint Genome Institute
University of Bari “Aldo Moro”, Bari (Italy)
Technical University of Denmark, Lyngby (Denmark)
Mendel University, Brno (Czech Republic)
Westerdijk Fungal Biodiversity Institute, Utrecht (Netherlands)
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States). Joint Genome Institute; University of California, Berkeley, CA (United States)

Sequencing fungal genomes has now become very common and the list of genomes in this manuscript reflects this. Particularly relevant is that the first announcement is a re-identification of Penicillium genomes available on NCBI. The fact that more than 100 of these genomes have been deposited without the correct species names speak volumes to the fact that we must continue training fungal taxonomists and the importance of the International Mycological Association (after which this journal is named). When we started the genome series in 2013, one of the essential aspects was the need to have a phylogenetic tree as part of the manuscript. This came about as the result of a discussion with colleagues in NCBI who were trying to deal with the very many incorrectly identified bacterial genomes (at the time) which had been submitted to NCBI. We are now in the same position with fungal genomes. Sequencing a fungal genome is all too easy but providing a correct species name and ensuring that the fungus has in fact been correctly identified seems to be more difficult. We know that there are thousands of fungi which have not yet been described. The availability of sequence data has made identification of fungi easier but also serves to highlight the need to have a fungal taxonomist in the project to make sure that mistakes are not made.

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Research Organization:: Pacific Northwest National Laboratory (PNNL), Richland, WA (United States); Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: Department of Science and Technology (DST)-National Research Foundation (NRF); Mendel University; USDOE Office of Science (SC), Biological and Environmental Research (BER); USDOE Office of Science (SC), Basic Energy Sciences (BES). Scientific User Facilities (SUF)

Grant/Contract Number:: AC05-76RL01830; AC02-05CH11231

OSTI ID:: 2301563

Alternate ID(s):: OSTI ID: 2323304

Report Number(s):: PNNL-SA-194178

Journal Information:: IMA Fungus, Vol. 14, Issue 1; ISSN 2210-6359

Publisher:: BioMed CentralCopyright Statement

Country of Publication:: United States

Language:: English

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