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Title: Engineering Supramolecular Hybrid Architectures with Directional Organofluorine Bonds

Journal Article · · Small Science
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  1. Institute of Materials Science University of Connecticut Storrs CT 06269 USA, Department of Chemistry University of Connecticut Storrs CT 06269 USA
  2. Molecular Biophysics and Integrated Bioimaging Division Lawrence Berkeley National Laboratory Berkeley CA 94720 USA
  3. Advanced Photon Technology Division RIKEN SPring-8 Center 1-1-1 Kouto Sayo Hyogo 679-5148 Japan
  4. Advanced Photon Technology Division RIKEN SPring-8 Center 1-1-1 Kouto Sayo Hyogo 679-5148 Japan, XFEL Utilization Division Japan Synchrotron Radiation Research Institute 1-1-1 Kouto Sayo Hyogo 679-5198 Japan
  5. XFEL Utilization Division Japan Synchrotron Radiation Research Institute 1-1-1 Kouto Sayo Hyogo 679-5198 Japan, Structural Biology Research Center Photon Factory Institute of Materials Structure Science High Energy Accelerator Research Organization 1-1 Oho Tsukuba Ibaraki 305-0801 Japan
  6. Linac Coherent Light Source SLAC National Accelerator Laboratory Menlo Park CA 94025 USA
  7. National Energy Research Scientific Computing Center Lawrence Berkeley National Laboratory Berkeley CA 94720 USA
  8. Department of Chemistry University of Connecticut Storrs CT 06269 USA

Understanding how chemical modifications alter the atomic‐scale organization of materials is of fundamental importance in materials engineering and the target of considerable efforts in computational prediction. Incorporating covalent and noncovalent interactions in designing crystals while “piggybacking” on the driving force of molecular self‐assembly has augmented efforts to understand the emergence of complex structures using directed synthesis. In this work, microcrystalline powders of the silver 2‐, 3‐, and 4‐fluorobenzenethiolates are prepared and their structures are resolved by small‐molecule serial femtosecond X‐ray crystallography. These three compounds enable the emergence and role of supramolecular synthons in the crystal structures of 3D metal‐organic chalcogenolates to be examined. The unique divergence in their optoelectronic, morphological, and structural behaviors is assessed. The extent of CHF interactions and their influence on the structure and the observed trends in the thermal stability of the crystals are quantified through theoretical calculations and thermogravimetric analysis.

Sponsoring Organization:
USDOE
Grant/Contract Number:
SC0022215
OSTI ID:
2229972
Alternate ID(s):
OSTI ID: 2229974
Journal Information:
Small Science, Journal Name: Small Science Journal Issue: 1 Vol. 4; ISSN 2688-4046
Publisher:
Wiley Blackwell (John Wiley & Sons)Copyright Statement
Country of Publication:
Germany
Language:
English

References (73)

Overview of the SACLA facility journal April 2015
XFEL Microcrystallography of Self-Assembling Silver n-Alkanethiolates journal July 2023
Solid-State Structures of Hydrogen-Bonded Tapes Based on Cyclic Secondary Diamides journal December 1994
Variability of C–F Bonds Governs the Formation of Specific Structural Motifs in Fluorinated Graphenes journal October 2019
Packing analysis of organic crystals containing carbonyl or cyano groups journal May 1990
SUPERFLIP – a computer program for the solution of crystal structures by charge flipping in arbitrary dimensions journal July 2007
TOPAS and TOPAS-Academic : an optimization program integrating computer algebra and crystallographic objects written in C++ journal February 2018
Phosphine and diphosphine complexes of tungsten(VI) oxide tetrafluoride journal May 2017
Gas dynamic virtual nozzle for generation of microscopic droplet streams journal September 2008
Pseudo-halide anion engineering for α-FAPbI3 perovskite solar cells journal April 2021
Anomalous collapses of Nares Strait ice arches leads to enhanced export of Arctic sea ice journal January 2021
Synthon-based ligand discovery in virtual libraries of over 11 billion compounds journal December 2021
The Coherent X-ray Imaging instrument at the Linac Coherent Light Source journal April 2015
Structural Diversity and Argentophilic Interactions in Small Phosphine Silver(I) Thiolate Clusters
  • Caballero‐Muñoz, Alejandra; Guevara‐Vela, José Manuel; Fernández‐Alarcón, Alberto
  • European Journal of Inorganic Chemistry, Vol. 2021, Issue 27 https://doi.org/10.1002/ejic.202100336
journal June 2021
Crystal structures of polynuclear aromatic hydrocarbons. Classification, rationalization and prediction from molecular structure journal October 1989
Morphological Control of 2D Hybrid Organic–Inorganic Semiconductor AgSePh journal January 2022
IR spectroscopy as a probe for C–H⋯X hydrogen bonded supramolecular synthons journal January 2015
Crystal Structure Prediction of Aminols:  Advantages of a Supramolecular Synthon Approach with Experimental Structures journal July 2005
Pseudopotentials periodic table: From H to Pu journal December 2014
Halogen Bonds in Crystal Engineering: Like Hydrogen Bonds yet Different journal May 2014
Carbonyl–Carbonyl Interactions can be Competitive with Hydrogen Bonds journal June 1998
Energy components in a lattice of ions and dipoles:Application to the K(THF)xC24compounds (x=1,2) journal June 1997
Argentophilic Interactions journal November 2014
Fluorine in crystal engineering—“the little atom that could” journal January 2005
Sterically Invariant Carborane-Based Ligands for the Morphological and Electronic Control of Metal–Organic Chalcogenolate Assemblies journal July 2022
Improving signal strength in serial crystallography with DIALS geometry refinement journal September 2018
Chemical reactivity of C–F bonds attached to graphene with diamines depending on their nature and location journal January 2016
Focusing of X-ray free-electron laser pulses with reflective optics journal December 2012
OLEX2 : a complete structure solution, refinement and analysis program journal January 2009
A single-shot transmissive spectrometer for hard x-ray free electron lasers journal July 2012
Protein structure determination by single-wavelength anomalous diffraction phasing of X-ray free-electron laser data journal March 2016
Supramolecular Synthons in Crystal Engineering. 3. Solid State Architecture and Synthon Robustness in Some 2,3-Dicyano-5,6-dichloro-1,4-dialkoxybenzenes1 journal January 1996
Chemical crystallography by serial femtosecond X-ray diffraction journal January 2022
C−H···F Interactions in the Crystal Structures of Some Fluorobenzenes journal September 1998
Reflections on the Hydrogen Bond in Crystal Engineering journal April 2011
Dipolar−Dipolar Interactions and the Crystal Packing of Nitriles, Ketones, Aldehdyes, and C(sp2)−F Groups journal November 2003
DIALS : implementation and evaluation of a new integration package journal February 2018
Single-crystal structure validation with the program PLATON journal January 2003
Facile synthesis of fluorine-doped graphene aerogel with rich semi-ionic C–F bonds for high-performance supercapacitor application journal May 2020
Fast and accurate data collection for macromolecular crystallography using the JUNGFRAU detector journal October 2018
Characterization of Conformation and Locations of C–F Bonds in Graphene Derivative by Polarized ATR-FTIR journal March 2016
Superhydrophobicity in Highly Fluorinated Porous Metal-Organic Frameworks journal May 2012
Structural Diversity and Argentophilic Interactions in One-Dimensional Silver-Based Coordination Polymers journal September 2017
The Halogen Bond journal January 2016
Strongly Quantum-Confined Blue-Emitting Excitons in Chemically Configurable Multiquantum Wells journal November 2020
Fluid sample injectors for x-ray free electron laser at SACLA journal January 2017
Self-Organization of 2,5-Di-n-Alkoxy-1,4-benzoquinones in the Solid State:  Molecular Recognition Involving Intermolecular Dipole−Dipole, Weak C−H···OC Hydrogen Bond and van der Waals Interactions journal January 1996
Supramolecular Synthons in Crystal Engineering—A New Organic Synthesis journal November 1995
Corrosion of Late- and Post-Transition Metals into Metal–Organic Chalcogenolates and Implications for Nanodevice Architectures journal March 2020
Electrochemical Characterization of the Alkaneselenol-Based SAMs on Au(111) Single Crystal Electrode journal October 2002
Determination of X-ray pulse duration via intensity correlation measurements of X-ray fluorescence journal September 2019
Crystal structure refinement with SHELXL journal January 2015
Microwave-assisted synthesis of metal-organic chalcogenolate assemblies as electrocatalysts for syngas production journal March 2023
Stabilization of Three-Particle Excitations in Monolayer MoS2 by Fluorinated Methacrylate Polymers journal May 2022
Self assembly of sandwich-layered 2D silver(I) coordination polymers stabilized by argentophilic interactions: Synthesis, crystal structures and ab initio intramolecular energetics journal November 2014
Halogen bond tunability I: the effects of aromatic fluorine substitution on the strengths of halogen-bonding interactions involving chlorine, bromine, and iodine journal March 2011
Exchange Reactions between Alkanethiolates and Alkaneselenols on Au{111} journal May 2014
Mithrene Is a Self-Assembling Robustly Blue Luminescent Metal–Organic Chalcogenolate Assembly for 2D Optoelectronic Applications journal June 2018
Chemistry beyond the molecule journal July 2001
Measurement of the X-ray Spectrum of a Free Electron Laser with a Wide-Range High-Resolution Single-Shot Spectrometer journal June 2017
Molecular Recognition in Organic Crystals: Directed Intermolecular Bonds or Nonlocalized Bonding? journal March 2005
Effects of Fluorine Substitution on the Edge-to-Face Interaction of the Benzene Dimer journal August 2005
Imaging the halogen bond in self-assembled halogenbenzenes on silver journal September 2017
Complexes of molybdenum(VI) oxide tetrafluoride and molybdenum(VI) dioxide difluoride with neutral N- and O-donor ligands journal August 2017
Diverse application platform for hard X-ray diffraction in SACLA (DAPHNIS): application to serial protein crystallography using an X-ray free-electron laser journal April 2015
U1 snRNP regulates cancer cell migration and invasion in vitro journal January 2020
In situ immune response and mechanisms of cell damage in central nervous system of fatal cases microcephaly by Zika virus journal January 2018
Fluorine-functionalized metal–organic frameworks and porous coordination polymers journal September 2017
Indexing amyloid peptide diffraction from serial femtosecond crystallography: new algorithms for sparse patterns journal January 2015
1D Hybrid Semiconductor Silver 2,6-Difluorophenylselenolate journal February 2023
Development of an X-ray pixel detector with multi-port charge-coupled device for X-ray free-electron laser experiments journal March 2014
Self-Assembly of Carboranethiol Isomers on Au{111}: Intermolecular Interactions Determined by Molecular Dipole Orientations journal February 2009
The C−H···O Hydrogen Bond:  Structural Implications and Supramolecular Design journal January 1996

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