Improved AlphaFold modeling with implicit experimental information
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journal
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October 2022 |
TM-align: a protein structure alignment algorithm based on the TM-score
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journal
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April 2005 |
EMDataBank unified data resource for 3DEM
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journal
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November 2015 |
γ-TEMPy: Simultaneous Fitting of Components in 3D-EM Maps of Their Assembly Using a Genetic Algorithm
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journal
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December 2015 |
The Resolution Revolution
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journal
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March 2014 |
Topaz-Denoise: general deep denoising models for cryoEM and cryoET
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journal
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October 2020 |
CR-I-TASSER: assemble protein structures from cryo-EM density maps using deep convolutional neural networks
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journal
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February 2022 |
New prediction categories in CASP15
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journal
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June 2023 |
Towards automated crystallographic structure refinement with phenix.refine
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journal
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March 2012 |
DeepTracer for fast de novo cryo-EM protein structure modeling and special studies on CoV-related complexes
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journal
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December 2020 |
Accurate prediction of protein structures and interactions using a three-track neural network
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journal
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July 2021 |
Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix
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journal
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October 2019 |
A Machine Learning Approach for the Identification of Protein Secondary Structure Elements from Electron Cryo-Microscopy Density Maps
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journal
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June 2012 |
TorchIO: A Python library for efficient loading, preprocessing, augmentation and patch-based sampling of medical images in deep learning
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journal
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September 2021 |
High-resolution de novo structure prediction from primary sequence
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preprint
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July 2022 |
Deep Learning to Predict Protein Backbone Structure from High-Resolution Cryo-EM Density Maps
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journal
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March 2020 |
Local computational methods to improve the interpretability and analysis of cryo-EM maps
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journal
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February 2021 |
High‐accuracy protein structure prediction in CASP14
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journal
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July 2021 |
Highly accurate protein structure prediction with AlphaFold
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journal
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July 2021 |
Automated map sharpening by maximization of detail and connectivity
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journal
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May 2018 |
CD-HIT: accelerated for clustering the next-generation sequencing data
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journal
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October 2012 |
New tools for automated high-resolution cryo-EM structure determination in RELION-3
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journal
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November 2018 |
Model-based local density sharpening of cryo-EM maps
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journal
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October 2017 |
EMNUSS: a deep learning framework for secondary structure annotation in cryo-EM maps
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journal
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May 2021 |
Protein secondary structure detection in intermediate-resolution cryo-EM maps using deep learning
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journal
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July 2019 |
Cholesterol efflux mechanism revealed by structural analysis of human ABCA1 conformational states
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journal
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March 2022 |
Automatic local resolution-based sharpening of cryo-EM maps
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journal
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August 2019 |
U-Net: Convolutional Networks for Biomedical Image Segmentation
- Ronneberger, Olaf; Fischer, Philipp; Brox, Thomas
-
Medical Image Computing and Computer-Assisted Intervention – MICCAI 2015: 18th International Conference, Munich, Germany, October 5-9, 2015, Proceedings, Part III
https://doi.org/10.1007/978-3-319-24574-4_28
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book
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November 2015 |
Substrate-bound and substrate-free outward-facing structures of a multidrug ABC exporter
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journal
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January 2022 |
The Buccaneer software for automated model building. 1. Tracing protein chains
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journal
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August 2006 |
Optimal Determination of Particle Orientation, Absolute Hand, and Contrast Loss in Single-particle Electron Cryomicroscopy
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journal
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October 2003 |
Protein Hydration Observed by X-ray Diffraction
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journal
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October 1994 |
Features and development of Coot
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journal
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March 2010 |
Implications of AlphaFold2 for crystallographic phasing by molecular replacement
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journal
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January 2022 |
UCSF ChimeraX: Meeting modern challenges in visualization and analysis: UCSF ChimeraX Visualization System
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journal
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September 2017 |
Plug-and-Play Image Restoration With Deep Denoiser Prior
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journal
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October 2022 |
CryoREAD: de novo structure modeling for nucleic acids in cryo-EM maps using deep learning
|
journal
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October 2023 |
Evolutionary-scale prediction of atomic-level protein structure with a language model
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journal
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March 2023 |
Full-length de novo protein structure determination from cryo-EM maps using deep learning
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journal
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May 2021 |
Sparseness and Smoothness Regularized Imaging for improving the resolution of Cryo-EM single-particle reconstruction
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journal
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January 2021 |
OpenFold: Retraining AlphaFold2 yields new insights into its learning mechanisms and capacity for generalization
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preprint
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August 2023 |
Tertiary structure assessment at CASP15
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journal
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September 2023 |
The Protein Data Bank
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journal
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January 2000 |
New tools for the analysis and validation of cryo-EM maps and atomic models
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journal
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September 2018 |
Super Resolution Cryo-EM Maps with 3D Deep Generative Networks
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journal
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February 2021 |
DeepEMhancer: a deep learning solution for cryo-EM volume post-processing
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journal
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July 2021 |
Cryo-EM structure of an activated GPCR–G protein complex in lipid nanodiscs
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journal
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February 2021 |
Machine learning for RNA 2D structure prediction benchmarked on experimental data
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journal
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April 2023 |