Combinatorial Regulation of Endothelial Gene Expression by Ets and Forkhead Transcription Factors
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journal
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December 2008 |
Genome-Wide Characterization ofcis-Acting DNA Targets Reveals the Transcriptional Regulatory Framework ofOpaque2in Maize
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February 2015 |
Two bZIP proteins fromAntirrhinumflowers preferentially bind a hybrid C‐box/G‐box motif and help to define a new sub‐family of bZIP transcription factors
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February 1998 |
Model-based Analysis of ChIP-Seq (MACS)
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January 2008 |
MEME-ChIP: motif analysis of large DNA datasets
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April 2011 |
SMiLE-seq identifies binding motifs of single and dimeric transcription factors
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January 2017 |
Direct Control of SPEECHLESS by PIF4 in the High-Temperature Response of Stomatal Development
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April 2018 |
Impact of artifact removal on ChIP quality metrics in ChIP-seq and ChIP-exo data
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April 2014 |
MADS transcription factors cooperate: complexities of complex formation
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April 2018 |
Transcriptional program for nitrogen starvation-induced lipid accumulation in Chlamydomonas reinhardtii
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December 2015 |
Heterodimers of the Arabidopsis Transcription Factors bZIP1 and bZIP53 Reprogram Amino Acid Metabolism during Low Energy Stress
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January 2011 |
Determination and Inference of Eukaryotic Transcription Factor Sequence Specificity
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September 2014 |
Abscisic Acid: Emergence of a Core Signaling Network
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June 2010 |
The role of phosphorylatable serine residues in the DNA-binding domain of Arabidopsis bZIP transcription factors
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February 2010 |
Discovering Motifs in Ranked Lists of DNA Sequences
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March 2007 |
Barley BLZ2, a Seed-specific bZIP Protein That Interacts with BLZ1 in Vivo and Activates Transcription from the GCN4-like motif of B-hordein Promoters in Barley Endosperm
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April 1999 |
The Chlamydomonas bZIP transcription factor BLZ8 confers oxidative stress tolerance by inducing the carbon-concentrating mechanism
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December 2021 |
Synergistic Activation of Seed Storage Protein Gene Expression in Arabidopsis by ABI3 and Two bZIPs Related to OPAQUE2
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March 2003 |
Comparison of discriminative motif optimization using matrix and DNA shape-based models
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March 2018 |
DNA-dependent formation of transcription factor pairs alters their binding specificity
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November 2015 |
MAnorm2 for quantitatively comparing groups of ChIP-seq samples
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November 2020 |
Context of action of Proline Dehydrogenase (ProDH) in the Hypersensitive Response of Arabidopsis
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January 2014 |
The AtGenExpress hormone and chemical treatment data set: experimental design, data evaluation, model data analysis and data access
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August 2008 |
Expression patterns within the Arabidopsis C/S1 bZIP transcription factor network: availability of heterodimerization partners controls gene expression during stress response and development
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October 2008 |
Changing MADS-Box Transcription Factor Protein–Protein Interactions as a Mechanism for Generating Floral Morphological Diversity
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July 2017 |
A systematic genome-wide account of binding sites for the model transcription factor Gcn4
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December 2021 |
Characterization of abiotic stress-responsive Arabidopsis thaliana RD29A and RD29B genes and evaluation of transgenes
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March 2011 |
Transcriptional activation by recruitment
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April 1997 |
bZIPs and WRKYs: two large transcription factor families executing two different functional strategies
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April 2014 |
Response of plant metabolism to too little oxygen
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June 2003 |
GCN4 Binds with High Affinity to DNA Sequences Containing a Single Consensus Half-Site
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May 2000 |
Mitochondrial signalling is critical for acclimation and adaptation to flooding in Arabidopsis thaliana
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April 2020 |
B-ZIP Proteins Encoded by the Drosophila Genome: Evaluation of Potential Dimerization Partners
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August 2002 |
The Roles of Auxin Response Factor Domains in Auxin-Responsive Transcription
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January 2003 |
A Pivotal Role of the Basic Leucine Zipper Transcription Factor bZIP53 in the Regulation of Arabidopsis Seed Maturation Gene Expression Based on Heterodimerization and Protein Complex Formation
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June 2009 |
Mass-spectrometry-based draft of the Arabidopsis proteome
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March 2020 |
deepTools2: a next generation web server for deep-sequencing data analysis
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April 2016 |
Arabidopsis mesophyll protoplasts: a versatile cell system for transient gene expression analysis
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June 2007 |
PlantPAN3.0: a new and updated resource for reconstructing transcriptional regulatory networks from ChIP-seq experiments in plants
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November 2018 |
ChIP–seq: advantages and challenges of a maturing technology
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September 2009 |
Arabidopsis Transcription Factors: Genome-Wide Comparative Analysis Among Eukaryotes
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December 2000 |
ACTCAT, a Novel cis-Acting Element for Proline- and Hypoosmolarity-Responsive Expression of the ProDH Gene Encoding Proline Dehydrogenase in Arabidopsis
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October 2002 |
bZIP transcription factors in Arabidopsis
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March 2002 |
Genome-wide identification of grain filling genes regulated by the OsSMF1 transcription factor in rice
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April 2017 |
A central integrator of transcription networks in plant stress and energy signalling
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August 2007 |
Genome-wide binding of SEPALLATA3 and AGAMOUS complexes determined by sequential DNA-affinity purification sequencing
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September 2020 |
A novel k-mer set memory (KSM) motif representation improves regulatory variant prediction
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April 2018 |
Plant bZIP proteins gather at ACGT elements
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February 1994 |
The Origin of Land Plants Is Rooted in Two Bursts of Genomic Novelty
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February 2020 |
Transcription factor–DNA binding: beyond binding site motifs
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April 2017 |
Homotypic cooperativity and collective binding are determinants of bHLH specificity and function
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July 2019 |
Plant bZIP Protein DNA Binding Specificity
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April 1993 |
Abscisic Acid Signaling in Seeds and Seedlings
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May 2002 |
Local DNA shape is a general principle of transcription factor binding specificity in Arabidopsis thaliana
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November 2021 |
GO-PCA: An Unsupervised Method to Explore Gene Expression Data Using Prior Knowledge
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November 2015 |
Non-targeted transcription factors motifs are a systemic component of ChIP-seq datasets
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July 2014 |
Differential analysis of RNA-seq incorporating quantification uncertainty
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June 2017 |
A Novel Subgroup of bZIP Proteins Functions as Transcriptional Activators in Hypoosmolarity-Responsive Expression of the ProDH Gene in Arabidopsis
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March 2004 |
OXYGEN DEFICIENCY AND ROOT METABOLISM: Injury and Acclimation Under Hypoxia and Anoxia
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June 1997 |
A Triple Helix-Loop-Helix/Basic Helix-Loop-Helix Cascade Controls Cell Elongation Downstream of Multiple Hormonal and Environmental Signaling Pathways in Arabidopsis
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December 2012 |
Functional dissection of a eukaryotic transcriptional activator protein, GCN4 of Yeast
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September 1986 |
Mapping genome-wide transcription-factor binding sites using DAP-seq
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July 2017 |
Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape
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May 2016 |
Assessing Computational Methods for Transcription Factor Target Gene Identification Based on ChIP-seq Data
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November 2013 |
Complex heatmaps reveal patterns and correlations in multidimensional genomic data
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May 2016 |
Diversity and specificity in transcriptional regulation: the benefits of heterotypic dimerization
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January 1991 |
Cutadapt removes adapter sequences from high-throughput sequencing reads
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May 2011 |
A Rice Functional Transcriptional Activator, RISBZ1, Responsible for Endosperm-specific Expression of Storage Protein Genes through GCN4 Motif
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April 2001 |
Plant transcription factors — being in the right place with the right company
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February 2022 |
DiffLogo: a comparative visualization of sequence motifs
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November 2015 |
Mapping and Dynamics of Regulatory DNA and Transcription Factor Networks in A. thaliana
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September 2014 |
The Arabidopsis bZIP transcription factor family — an update
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October 2018 |
Metabolic Regulation of the Gene Encoding Glutamine-Dependent Asparagine Synthetase in Arabidopsis thaliana
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December 1994 |
The G-Box Transcriptional Regulatory Code in Arabidopsis
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September 2017 |
A-ZIP53, a dominant negative reveals the molecular mechanism of heterodimerization between bZIP53, bZIP10 and bZIP25 involved in Arabidopsis seed maturation
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October 2017 |
The Arabidopsis transcription factor bZIP11 activates auxin-mediated transcription by recruiting the histone acetylation machinery
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May 2014 |
Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights
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January 2011 |
The GCN4 bZIP Targets Noncognate Gene Regulatory Sequences: Quantitative Investigation of Binding at Full and Half Sites
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January 2007 |
The Regulatory Code for Transcriptional Response Diversity and Its Relation to Genome Structural Properties in A. thaliana
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February 2007 |
The GCN4 basic region leucine zipper binds DNA as a dimer of uninterrupted α Helices: Crystal structure of the protein-DNA complex
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December 1992 |
The Next Generation of Transcription Factor Binding Site Prediction
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September 2013 |
Identification and functional characterization of transcriptional activators in human cells
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February 2022 |
The C/S1 bZIP Network: A Regulatory Hub Orchestrating Plant Energy Homeostasis
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May 2018 |
The Arabidopsis bZIP1 Transcription Factor Is Involved in Sugar Signaling, Protein Networking, and DNA Binding
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March 2010 |
Varying levels of complexity in transcription factor binding motifs
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June 2015 |
Structural Basis for DNA Binding Specificity by the Auxin-Dependent ARF Transcription Factors
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January 2014 |
Snf1-RELATED KINASE1-Controlled C/S 1 -bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness
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January 2018 |
In pursuit of design principles of regulatory sequences
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June 2014 |
bZIP10-LSD1 antagonism modulates basal defense and cell death in Arabidopsis following infection
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September 2006 |
One Billion Years of bZIP Transcription Factor Evolution: Conservation and Change in Dimerization and DNA-Binding Site Specificity
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December 2006 |
EnrichedHeatmap: an R/Bioconductor package for comprehensive visualization of genomic signal associations
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April 2018 |
The mammalian Jun proteins: redundancy and specificity
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April 2001 |
The Elucidation of the Interactome of 16 Arabidopsis bZIP Factors Reveals Three Independent Functional Networks
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October 2015 |
Dimerization specificity of all 67 B-ZIP motifs in Arabidopsis thaliana: a comparison to Homo sapiens B-ZIP motifs
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June 2004 |
The leucine zipper: a hypothetical structure common to a new class of DNA binding proteins
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June 1988 |
ggseqlogo: a versatile R package for drawing sequence logos
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July 2017 |
karyoploteR: an R/Bioconductor package to plot customizable genomes displaying arbitrary data
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May 2017 |
One-Step Purification of Recombinant Proteins Using a Nanomolar-Affinity Streptavidin-Binding Peptide, the SBP-Tag
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December 2001 |
High-resolution DNA-binding specificity analysis of yeast transcription factors
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January 2009 |
Multiple protein factors bind to a rice glutelin promoter region
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January 1990 |
Low-Affinity Binding Sites and the Transcription Factor Specificity Paradox in Eukaryotes
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October 2019 |
The Arabidopsis NPR1/NIM1 Protein Enhances the DNA Binding Activity of a Subgroup of the TGA Family of bZIP Transcription Factors
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February 2000 |
The phylogeny of C/S1 bZIP transcription factors reveals a shared algal ancestry and the pre-angiosperm translational regulation of S1 transcripts
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July 2016 |
The oxygen status of the developing seed
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January 2009 |
The Role of bZIP Transcription Factors in Green Plant Evolution: Adaptive Features Emerging from Four Founder Genes
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August 2008 |
Transcription factor enrichment analysis (TFEA) quantifies the activity of multiple transcription factors from a single experiment
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June 2021 |
Combinatorial control of Arabidopsis proline dehydrogenase transcription by specific heterodimerisation of bZIP transcription factors
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June 2006 |
Fast gapped-read alignment with Bowtie 2
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March 2012 |
Combinatorial Transcriptional Control of Plant Specialized Metabolism
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April 2018 |
Divergence in DNA Specificity among Paralogous Transcription Factors Contributes to Their Differential In Vivo Binding
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April 2018 |
Interaction of NPR1 with basic leucine zipper protein transcription factors that bind sequences required for salicylic acid induction of the PR-1 gene
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May 1999 |
High Resolution Genome Wide Binding Event Finding and Motif Discovery Reveals Transcription Factor Spatial Binding Constraints
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August 2012 |
Combinatorial bZIP dimers display complex DNA-binding specificity landscapes
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February 2017 |
DNA-binding specificities of plant transcription factors and their potential to define target genes
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January 2014 |
Universal protein-binding microarrays for the comprehensive characterization of the DNA-binding specificities of transcription factors
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March 2009 |
A Novel Wheat C-bZIP Gene, TabZIP14-B, Participates in Salt and Freezing Tolerance in Transgenic Plants
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May 2017 |
Two-hybrid protein-protein interaction analysis in Arabidopsis protoplasts: establishment of a heterodimerization map of group C and group S bZIP transcription factors
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June 2006 |
Adapterama I: universal stubs and primers for 384 unique dual-indexed or 147,456 combinatorially-indexed Illumina libraries (iTru & iNext)
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January 2019 |
Hit-and-run transcriptional control by bZIP1 mediates rapid nutrient signaling in Arabidopsis
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June 2014 |
Near-optimal probabilistic RNA-seq quantification
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April 2016 |
SnRK1-triggered switch of bZIP63 dimerization mediates the low-energy response in plants
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August 2015 |
A transcription factor hierarchy defines an environmental stress response network
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November 2016 |