Terabase-Scale Coassembly of a Tropical Soil Microbiome

Riley, Robert; Bowers, Robert M.; Camargo, Antonio Pedro; Campbell, Ashley; Egan, Rob; Eloe-Fadrosh, Emiley A.; Foster, Brian; Hofmeyr, Steven; Huntemann, Marcel; Kellom, Matthew; Kimbrel, Jeffrey A.; Oliker, Leonid; Yelick, Katherine; Pett-Ridge, Jennifer; Salamov, Asaf; Varghese, Neha J.; Clum, Alicia; Hom, ed., Erik F. Y.

doi:10.1128/spectrum.00200-23

Title: Terabase-Scale Coassembly of a Tropical Soil Microbiome

Journal Article · 17 August 2023 · Microbiology Spectrum

DOI: https://doi.org/10.1128/spectrum.00200-23 · OSTI ID:1984894

^[1]; Bowers, Robert M. ^[1]; Camargo, Antonio Pedro ^[1]; Campbell, Ashley ^[2]; Egan, Rob ^[1];

^[1]; Foster, Brian ^[1]; Hofmeyr, Steven ^[3]; Huntemann, Marcel ^[1]; Kellom, Matthew ^[1]; Kimbrel, Jeffrey A. ^[2]; Oliker, Leonid ^[3]; Yelick, Katherine ^[4];

^[5]; Salamov, Asaf ^[1]; Varghese, Neha J. ^[1];

^[1]; Hom, ed., Erik F. Y.

Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley California, USA
Physical and Life Sciences Directorate, Lawrence Livermore National Laboratory, Livermore, California, USA
Applied Math and Computational Research Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA
Applied Math and Computational Research Division, Lawrence Berkeley National Laboratory, Berkeley, California, USA, Department of Electrical Engineering and Computer Sciences, University of California, Berkeley, California, USA
Physical and Life Sciences Directorate, Lawrence Livermore National Laboratory, Livermore, California, USA, Life &, Environmental Sciences Department, University of California Merced, Merced, California, USA

Petabases of reads are being produced by environmental metagenome sequencing. An essential step in analyzing these data is metagenome assembly, the computational reconstruction of genome sequences from microbial communities. “Coassembly” of metagenomic sequence data, in which multiple samples are assembled together, enables more complete detection of microbial genomes in an environment than “multiassembly,” in which samples are assembled individually.

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Sponsoring Organization:: USDOE

Grant/Contract Number:: AC02-05CH11231; AC05-00OR22725

OSTI ID:: 1984894

Journal Information:: Microbiology Spectrum, Journal Name: Microbiology Spectrum Journal Issue: 4 Vol. 11; ISSN 2165-0497

Publisher:: American Society for MicrobiologyCopyright Statement

Country of Publication:: United States

Language:: English

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