Fermentation‐mediated growth, signaling, and defense in plants

Jardine, Kolby J.; McDowell, Nate

doi:10.1111/nph.19015

Title: Fermentation‐mediated growth, signaling, and defense in plants

Journal Article · 05 June 2023 · New Phytologist

DOI: https://doi.org/10.1111/nph.19015 · OSTI ID:1984305

^[1]; McDowell, Nate ^[2]

Climate and Ecosystem Sciences Division Lawrence Berkeley National Laboratory Berkeley CA 94720 USA, Ciências de Florestas Tropicais National Institute for Amazon Research Manaus 69067 Amazonas Brazil
Atmospheric Sciences and Global Change Division Pacific Northwest National Lab Richland WA 99354 USA, School of Biological Sciences Washington State University Pullman WA 99164 USA

Summary While traditionally considered important mainly in hypoxic roots during flooding, upregulation of fermentation pathways in plants has recently been described as an evolutionarily conserved drought survival strategy, with acetate signaling mediating reprograming of transcription and cellular carbon and energy metabolism from roots to leaves. The amount of acetate produced directly correlates with survival through potential mechanisms including defense gene activation, biosynthesis of primary and secondary metabolites, and aerobic respiration. Here, we review root ethanolic fermentation responses to hypoxia during saturated soil conditions and summarize studies highlighting acetate fermentation under aerobic conditions coupled with respiration during growth and drought responses. Recent work is discussed demonstrating long‐distance transport of acetate via the transpiration stream as a respiratory substrate. While maintenance and growth respiration are often modeled separately in terrestrial models, here we propose the concept of ‘Defense Respiration’ fueled by acetate fermentation in which upregulation of acetate fermentation contributes acetate substrate for alternative energy production via aerobic respiration, biosynthesis of primary and secondary metabolites, and the acetylation of proteins involved in defense gene regulation. Finally, we highlight new frontiers in leaf‐atmosphere emission measurements as a potential way to study acetate fermentation responses of individual leaves, branches, ecosystems, and regions.

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Research Organization:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE; USDOE Office of Science (SC), Biological and Environmental Research (BER); USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science (BSS)

Grant/Contract Number:: AC02-05CH11231

OSTI ID:: 1984305

Report Number(s):: PNNL-SA-183144

Journal Information:: New Phytologist, Journal Name: New Phytologist Journal Issue: 3 Vol. 239; ISSN 0028-646X

Publisher:: Wiley-BlackwellCopyright Statement

Country of Publication:: United Kingdom

Language:: English

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Volatile organic compound emissions from Larrea tridentata (creosotebush) Jardine, K.; Abrell, L.; Kurc, S. A. Atmospheric Chemistry and Physics, Vol. 10, Issue 24 https://doi.org/10.5194/acp-10-12191-2010	journal	January 2010
Emissions and ambient distributions of Biogenic Volatile Organic Compounds (BVOC) in a ponderosa pine ecosystem: interpretation of PTR-MS mass spectra Kim, S.; Karl, T.; Guenther, A. Atmospheric Chemistry and Physics, Vol. 10, Issue 4 https://doi.org/10.5194/acp-10-1759-2010	journal	January 2010
Eddy covariance emission and deposition flux measurements using proton transfer reaction – time of flight – mass spectrometry (PTR-TOF-MS): comparison with PTR-MS measured vertical gradients and fluxes Park, J. -H.; Goldstein, A. H.; Timkovsky, J. Atmospheric Chemistry and Physics, Vol. 13, Issue 3 https://doi.org/10.5194/acp-13-1439-2013	journal	January 2013
A multi-purpose, multi-rotor drone system for long-range and high-altitude volcanic gas plume measurements Galle, Bo; Arellano, Santiago; Bobrowski, Nicole Atmospheric Measurement Techniques, Vol. 14, Issue 6 https://doi.org/10.5194/amt-14-4255-2021	journal	June 2021
The effect of flooding on the exchange of the volatile C₂-compounds ethanol, acetaldehyde and acetic acid between leaves of Amazonian floodplain tree species and the atmosphere Rottenberger, S.; Kleiss, B.; Kuhn, U. Biogeosciences, Vol. 5, Issue 4 https://doi.org/10.5194/bg-5-1085-2008	journal	January 2008
Ecosystem-scale compensation points of formic and acetic acid in the central Amazon Jardine, K.; Yañez Serrano, A.; Arneth, A. Biogeosciences, Vol. 8, Issue 12 https://doi.org/10.5194/bg-8-3709-2011	journal	January 2011

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