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Title: Zinc-based cyclens containing pyridine and cross-bridges: X-ray and DFT structures, Lewis acidity, gas-phase acidity, and pKa values

Journal Article · · Polyhedron

Herein it is well known that catalytic centers containing the zinc(II) ion can act as both Lewis and Bronsted-Lowry acids. In addition to coordination number, the Zn coordination geometry can also strongly impact the acidity of the active site, no matter what measure of acidity is considered. Herein, we report the first pentacoordinate, zinc-ammonia complex containing a pyridine based tetraazamacrocycle, [(pyclen)Zn(NH3)](PF6)2, that has applications in Lewis acid catalysis. From this structure, we obtain binding energies and acidities for a series of related pyclen and cross-bridged cyclen type tetraazamacrocycles comprising the pentacoordinate N4Zn(II)–OH2 entity, collectively referred to as [(R-cyclen)Zn–OH2]2+. Results from gas- and aqueous-phase density functional theory (M05-2X) and ab initio (MP2) calculations reported herein demonstrate that molecular geometry has a substantial influence on both the Zn–OHx binding strengths and the deprotonation energy of coordinated H2O, but not necessarily in a predicable way. While generally more constrained N–Zn–N coordination leads to greater Zn–OH2 binding energies (Lewis acidities), the corresponding Lewis acidities of the complexes don’t always correlate with the Zn–OH2 bond lengths nor the (Bronsted) acidity of the coordinated H2O. Additionally, the order of the Lewis acid strength of the [(R-cyclen)Zn(II)] complexes changes as the basic –OH2 ligand is replaced with its –OH counterpart.

Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States). Advanced Light Source (ALS)
Sponsoring Organization:
USDOE Office of Science (SC), Basic Energy Sciences (BES). Materials Sciences & Engineering Division (MSE); National Institute of General Medical Sciences (NIGMS)
Grant/Contract Number:
AC02-05CH11231
OSTI ID:
1981735
Journal Information:
Polyhedron, Journal Name: Polyhedron Journal Issue: C Vol. 223; ISSN 0277-5387
Publisher:
ElsevierCopyright Statement
Country of Publication:
United States
Language:
English

References (38)

Aspartate-Based CXCR4 Chemokine Receptor Binding of Cross-Bridged Tetraazamacrocyclic Copper(II) and Zinc(II) Complexes journal July 2016
Linear Free-Energy Relationships between a Single Gas-Phase Ab Initio Equilibrium Bond Length and Experimental pKaValues in Aqueous Solution journal November 2014
Evaluation of Zn 2+ Coordination Structures in Chiral Zn 2+ Complexes Based on Shape Measurement Factors: Relationships between Activity and the Coordination Structure journal November 2019
[Zinc(II)(Pyridine‐Containing Ligand)] Complexes as Single‐Component Efficient Catalyst for Chemical Fixation of CO 2 with Epoxides journal May 2021
A theoretical study of standard heat of formation of systems involving in the zinc reduction of silicon tetrachloride journal November 2014
Synthesis and coordination chemistry of topologically constrained azamacrocycles journal June 2003
Synthesis, structure, and stability in acid of copper(II) and zinc(II) complexes of cross-bridged tetraazamacrocycles journal May 2003
Synthetic strategies for preparation of cyclen-based MRI contrast agents journal February 2015
Why Diorganyl Zinc Lewis Acidity Dramatically Increases with Narrowing C–Zn–C Bond Angle journal February 2020
Methanethiol Binding Strengths and Deprotonation Energies in Zn(II)–Imidazole Complexes from M05-2X and MP2 Theories: Coordination Number and Geometry Influences Relevant to Zinc Enzymes journal September 2015
Role of Bimetallic Interactions in the Enhancement of Catalytic CO2 Reduction by a Macrocyclic Cobalt Catalyst journal January 2022
Designing Hydrolytic Zinc Metalloenzymes journal February 2014
Synthetic Analogues Relevant to the Structure and Function of Zinc Enzymes journal February 2004
Iron-Catalyzed Olefin Epoxidation and cis-Dihydroxylation by Tetraalkylcyclam Complexes: the Importance of cis-Labile Sites journal July 2011
Design of Density Functionals by Combining the Method of Constraint Satisfaction with Parametrization for Thermochemistry, Thermochemical Kinetics, and Noncovalent Interactions journal January 2006
Zn Coordination Chemistry:  Development of Benchmark Suites for Geometries, Dipole Moments, and Bond Dissociation Energies and Their Use To Test and Validate Density Functionals and Molecular Orbital Theory journal November 2007
Energies, Geometries, and Charge Distributions of Zn Molecules, Clusters, and Biocenters from Coupled Cluster, Density Functional, and Neglect of Diatomic Differential Overlap Models journal April 2009
Kinetics and mechanism of the hydration of carbon dioxide and dehydration of bicarbonate catalyzed by a zinc (II) complex of 1,5,9-triazacyclododecane as a model for carbonic anhydrase journal December 1993
Cobalt(II), Nickel(II), Copper(II), and Zinc(II) Complexes with [35]Adamanzane, 1,5,9,13-Tetraazabicyclo[7.7.3]nonadecane, and [(2.3)2.21]Adamanzane, 1,5,9,12-Tetraazabicyclo[7.5.2]hexadecane journal April 2001
Lewis Acid Properties of Zinc(II) in Its Cyclen Complex. The Structure of [Zn(Cyclen)(SC(NH2)2](ClO4)2 and the Bonding of Thiourea to Metal Ions. Some Implications for Zinc Metalloenzymes journal March 2005
Toward a Small Molecule, Biomimetic Carbonic Anhydrase Model: Theoretical and Experimental Investigations of a Panel of Zinc(II) Aza-Macrocyclic Catalysts journal June 2012
Synthesis and Structural Studies of Nickel(0) Tetracarbene Complexes with the Introduction of a New Four-Coordinate Geometric Index, τ δ journal March 2015
The catalytic carboxyester hydrolysis by a new zinc(II) complex with an alcohol-pendant cyclen (1-(2-hydroxyethyl)-1,4,7,10-tetraazacyclododecane): A novel model for indirect activation of the serine nucleophile by zinc(II) in zinc enzymes journal February 1995
A zinc(II) complex of 1,5,9-triazacyclododecane ([12]aneN3) as a model for carbonic anhydrase journal July 1990
New Iron(II) and Manganese(II) Complexes of Two Ultra-Rigid, Cross-Bridged Tetraazamacrocycles for Catalysis and Biomimicry journal March 2000
Universal Solvation Model Based on Solute Electron Density and on a Continuum Model of the Solvent Defined by the Bulk Dielectric Constant and Atomic Surface Tensions
  • Marenich, Aleksandr V.; Cramer, Christopher J.; Truhlar, Donald G.
  • The Journal of Physical Chemistry B, Vol. 113, Issue 18, p. 6378-6396 https://doi.org/10.1021/jp810292n
journal May 2009
Dynamic cyclen–metal complexes for molecular sensing and chirality signaling journal January 2013
[(H2O)Zn(Imidazole)n]2+: the vital roles of coordination number and geometry in Zn–OH2 acidity and catalytic hydrolysis journal January 2018
Synthesis, structure, and spectroscopic properties of copper( II ) compounds containing nitrogen–sulphur donor ligands; the crystal and molecular structure of aqua[1,7-bis(N-methylbenzimidazol-2′-yl)-2,6-dithiaheptane]copper( II ) perchlorate journal January 1984
Ultra rigid cross-bridged tetraazamacrocycles as ligands—the challenge and the solution journal January 1998
Inside or outside a ligand cleft? Synthetic, structural, and kinetic inertness studies of zinc, cadmium, and mercury complexes of cross-bridged cyclam and cyclen journal January 2004
pKa prediction from an ab initio bond length: Part 3—benzoic acids and anilines journal January 2011
Systematically convergent basis sets for transition metals. I. All-electron correlation consistent basis sets for the 3d elements Sc–Zn journal August 2005
Continuous surface charge polarizable continuum models of solvation. I. General formalism journal March 2010
Gaussian basis sets for use in correlated molecular calculations. I. The atoms boron through neon and hydrogen journal January 1989
A complete basis set model chemistry. VI. Use of density functional geometries and frequencies journal February 1999
A complete basis set model chemistry. VII. Use of the minimum population localization method journal April 2000
Nickel(II) Complexes with [2(4).3(1)]Adamanzane, 1,4,7,10-Tetraazabicyclo[5.5.3]pentadecane. journal January 1999