DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: BioRT-Flux-PIHM v1.0: a biogeochemical reactive transport model at the watershed scale

Journal Article · · Geoscientific Model Development (Online)

Watersheds are the fundamental Earth surface functioning units that connect the land to aquatic systems. Many watershed-scale models represent hydrological processes but not biogeochemical reactive transport processes. This has limited our capability to understand and predict solute export, water chemistry and quality, and Earth system response to changing climate and anthropogenic conditions. Here we present a recently developed BioRT-Flux-PIHM (BioRT hereafter) v1.0, a watershed-scale biogeochemical reactive transport model. The model augments the previously developed RT-Flux-PIHM that integrates land-surface interactions, surface hydrology, and abiotic geochemical reactions. It enables the simulation of (1) shallow and deep-water partitioning to represent surface runoff, shallow soil water, and deeper groundwater and of (2) biotic processes including plant uptake, soil respiration, and nutrient transformation. The reactive transport part of the code has been verified against the widely used reactive transport code CrunchTope. BioRT-Flux-PIHM v1.0 has recently been applied in multiple watersheds under diverse climate, vegetation, and geological conditions. This paper briefly introduces the governing equations and model structure with a focus on new aspects of the model. It also showcases one hydrology example that simulates shallow and deep-water interactions and two biogeochemical examples relevant to nitrate and dissolved organic carbon (DOC). These examples are illustrated in two simulation modes of complexity. One is the spatially lumped mode (i.e., two land cells connected by one river segment) that focuses on processes and average behavior of a watershed. Another is the spatially distributed mode (i.e., hundreds of cells) that includes details of topography, land cover, and soil properties. Whereas the spatially lumped mode represents averaged properties and processes and temporal variations, the spatially distributed mode can be used to understand the impacts of spatial structure and identify hot spots of biogeochemical reactions. The model can be used to mechanistically understand coupled hydrological and biogeochemical processes under gradients of climate, vegetation, geology, and land use conditions.

Research Organization:
Pennsylvania State University, University Park, PA (United States)
Sponsoring Organization:
USDOE Office of Science (SC); National Science Foundation (NSF)
Grant/Contract Number:
SC0020146
OSTI ID:
1981301
Journal Information:
Geoscientific Model Development (Online), Journal Name: Geoscientific Model Development (Online) Journal Issue: 1 Vol. 15; ISSN 1991-9603
Publisher:
Copernicus Publications, EGUCopyright Statement
Country of Publication:
United States
Language:
English

References (102)

Catchment chemostasis revisited: Water quality responds differently to variations in weather and climate journal September 2019
Nitrate removal and young stream water fractions at the catchment scale journal May 2020
Reactive transport codes for subsurface environmental simulation journal September 2014
An overview of current applications, challenges, and future trends in distributed process-based models in hydrology journal June 2016
A Mechanistic Model of Microbially Mediated Soil Biogeochemical Processes: A Reality Check journal June 2019
Climate-induced pumping journal January 2017
Vertical distribution of fine root density, length density, area index and mean diameter in a Quercus ilex forest journal May 2001
Numerical Modeling and Isotope Tracers to Investigate Karst Biogeochemistry and Transport Processes text January 2018
Levetiracetam for epilepsy: an evidence map of efficacy, safety and economic profiles journal December 2018
Linking soil- and stream-water chemistry based on a Riparian Flow-Concentration Integration Model text January 2009
Multiresponse modeling of variably saturated flow and isotope tracer transport for a hillslope experiment at the Landscape Evolution Observatory journal October 2016
Studying the influence of groundwater representations on land surface-atmosphere feedbacks during the European heat wave in 2003: Groundwater Feedbacks on 2003 Heat Wave journal November 2016
Understanding watershed hydrogeochemistry: 1. Development of RT-Flux-PIHM: DEVELOPMENT OF RT-FLUX-PIHM journal March 2017
Understanding watershed hydrogeochemistry: 2. Synchronized hydrological and geochemical processes drive stream chemostatic behavior: CONCENTRATION-DISCHARGE RELATIONSHIP journal March 2017
Elemental properties, hydrology, and biology interact to shape concentration-discharge curves for carbon, nutrients, sediment, and major ions: SHAPES AND CAUSES OF C-Q RELATIONSHIPS journal February 2017
Estimating Discharge and Nonpoint Source Nitrate Loading to Streams From Three End-Member Pathways Using High-Frequency Water Quality Data: NONPOINT SOURCE N LOADING journal December 2017
Plant root distributions and nitrogen uptake predicted by a hypothesis of optimal root foraging: Optimal Root Foraging journal May 2012
Catchment chemostasis revisited: Water quality responds differently to variations in weather and climate journal September 2019
Spatio‐temporal patterns of the interaction between groundwater and surface water in plains journal January 2020
Nitrate removal and young stream water fractions at the catchment scale journal May 2020
Concentration-discharge relationships reflect chemostatic characteristics of US catchments journal June 2009
Toward catchment hydro‐biogeochemical theories journal December 2020
Kinetics of Water-Rock Interaction book January 2008
Modelling the uptake of nitrate by a growing plant with an adjustable root nitrate uptake capacity journal April 1996
Reactive transport codes for subsurface environmental simulation journal September 2014
Catchments as reactors: a comprehensive approach for water fluxes and solute turnover journal February 2013
Testing and validating environmental models journal April 1996
A high resolution estimate of the inorganic nitrogen flux from the Scheldt estuary to the coastal North Sea during a nitrogen-limited algal bloom, spring 1995 journal May 1999
Catchment controls on solute export journal December 2015
Soil chemistry and shale weathering on a hillslope influenced by convergent hydrologic flow regime at the Susquehanna/Shale Hills Critical Zone Observatory journal June 2011
Topographic controls on the depth distribution of soil CO2 in a small temperate watershed journal December 2015
Expanding the role of reactive transport models in critical zone processes journal February 2017
Essential Terrestrial Variable data workflows for distributed water resources modeling journal December 2013
A tightly coupled GIS and distributed hydrologic modeling framework journal December 2014
Global evaluation and sensitivity analysis of a physically based flow and reactive transport model on a laboratory experiment journal March 2019
Mineral weathering and elemental transport during hillslope evolution at the Susquehanna/Shale Hills Critical Zone Observatory journal July 2010
Spatial zonation limits magnesite dissolution in porous media journal February 2014
An upscaled rate law for magnesite dissolution in heterogeneous porous media journal August 2017
A reactive transport model for Marcellus shale weathering journal November 2017
An upscaled rate law for mineral dissolution in heterogeneous media: The role of time and length scales journal August 2018
Weathering of rock to regolith: The activity of deep roots in bedrock fractures journal August 2017
Testing nutrient flushing hypotheses at the hillslope scale: A virtual experiment approach journal March 2006
A manifesto for the equifinality thesis journal March 2006
An overview of current applications, challenges, and future trends in distributed process-based models in hydrology journal June 2016
A Brief Overview of the GLObal RIver Chemistry Database, GLORICH journal January 2014
Temperature sensitivity of organic matter decomposition of permafrost-region soils during laboratory incubations journal June 2016
The Shallow and Deep Hypothesis: Subsurface Vertical Chemical Contrasts Shape Nitrate Export Patterns from Different Land Uses journal August 2020
Unprocessed Atmospheric Nitrate in Waters of the Northern Forest Region in the U.S. and Canada journal March 2019
Influence of soil organic matter composition on the partition of organic compounds journal February 1992
Uranium Bioreduction Rates across Scales: Biogeochemical Hot Moments and Hot Spots during a Biostimulation Experiment at Rifle, Colorado journal August 2014
A semidiscrete finite volume formulation for multiprocess watershed simulation: MULTIPROCESS WATERSHED SIMULATION journal August 2007
Global pattern of temperature sensitivity of soil heterotrophic respiration (Q 10 ) and its implications for carbon-climate feedback : GLOBAL PATTERN OF TEMPERATURE SENSITIVITY journal May 2009
Carbon cost of plant nitrogen acquisition: A mechanistic, globally applicable model of plant nitrogen uptake, retranslocation, and fixation: CARBON COST OF PLANT N ACQUISITION journal March 2010
Excluded-volume expansion of Archie's law for gas and solute diffusivities and electrical and thermal conductivities in variably saturated porous media: EXCLUDED-VOLUME EXPANSION OF ARCHIE'S LAW journal June 2010
Nutrient loads exported from managed catchments reveal emergent biogeochemical stationarity: BIOGEOCHEMICAL STATIONARITY journal December 2010
Nitrate response of a lowland catchment: On the relation between stream concentration and travel time distribution dynamics: NITRATE RESPONSE OF A LOWLAND CATCHMENT journal November 2010
Nitrogen Budget and Topographic Controls on Nitrous Oxide in a Shale-Based Watershed journal June 2018
A Mechanistic Model of Microbially Mediated Soil Biogeochemical Processes: A Reality Check journal June 2019
Generality of Hydrologic Transport Limitation of Watershed Organic Carbon Flux Across Ecoregions of the United States journal November 2018
Streamflow Generation From Catchments of Contrasting Lithologies: The Role of Soil Properties, Topography, and Catchment Size journal November 2019
Distinct Source Water Chemistry Shapes Contrasting Concentration‐Discharge Patterns journal May 2019
Depth of Solute Generation Is a Dominant Control on Concentration‐Discharge Relations journal August 2020
Spatiotemporal Drivers of Hydrochemical Variability in a Tropical Glacierized Watershed in the Andes journal May 2021
Vertical Connectivity Regulates Water Transit Time and Chemical Weathering at the Hillslope Scale journal August 2021
The Limits of Homogenization: What Hydrological Dynamics can a Simple Model Represent at the Catchment Scale? journal June 2021
Streams as Mirrors: Reading Subsurface Water Chemistry From Stream Chemistry journal January 2022
Temperature sensitivity of soil carbon decomposition and feedbacks to climate change journal March 2006
Ground water and climate change journal November 2012
Climate-induced pumping journal January 2017
A moisture function of soil heterotrophic respiration that incorporates microscale processes journal July 2018
Significant stream chemistry response to temperature variations in a high-elevation mountain watershed journal November 2020
Depth-distribution patterns and control of soil organic carbon in coastal salt marshes with different plant covers journal October 2016
Effects of root-zone temperature and N, P, and K supplies on nutrient uptake of cucumber (Cucumis sativusL.) seedlings in hydroponics journal December 2012
Vertical distribution of fine root density, length density, area index and mean diameter in a Quercus ilex forest journal May 2001
SWATMOD‐Prep: Graphical User Interface for Preparing Coupled SWAT‐MODFLOW Simulations journal February 2017
A global synthesis of the rate and temperature sensitivity of soil nitrogen mineralization: latitudinal patterns and mechanisms journal June 2016
On the variability of respiration in terrestrial ecosystems: moving beyond Q10 journal February 2006
Effects of three years of soil warming and shading on the rate of soil respiration: substrate availability and not thermal acclimation mediates observed response journal August 2007
GMRES: A Generalized Minimal Residual Algorithm for Solving Nonsymmetric Linear Systems journal July 1986
SUNDIALS: Suite of nonlinear and differential/algebraic equation solvers journal September 2005
Development of a Coupled Land Surface Hydrologic Model and Evaluation at a Critical Zone Observatory journal October 2013
Model Evaluation Guidelines for Systematic Quantification of Accuracy in Watershed Simulations journal January 2007
Hydrologic and Water Quality Models: Performance Measures and Evaluation Criteria journal December 2015
Parameter Precision in the HBV-NP Model and Impacts on Nitrogen Scenario Simulations in the Rönneå River, Southern Sweden journal November 2005
Temporal Stability of Soil Moisture Spatial Pattern and Subsurface Preferential Flow Pathways in the Shale Hills Catchment journal January 2006
Quantifying Solute Transport at the Shale Hills Critical Zone Observatory journal January 2011
Hot Spots and Hot Moments of Dissolved Organic Carbon Export and Soil Organic Carbon Storage in the Shale Hills Catchment journal January 2011
The East River, Colorado, Watershed: A Mountainous Community Testbed for Improving Predictive Understanding of Multiscale Hydrological–Biogeochemical Dynamics journal January 2018
Susquehanna Shale Hills Critical Zone Observatory: Shale Hills in the Context of Shaver's Creek Watershed journal January 2018
Watershed Reactive Transport journal September 2019
Development and testing of the HYPE (Hydrological Predictions for the Environment) water quality model for different spatial scales journal April 2010
EQ3/6, a software package for geochemical modeling of aqueous systems: Package overview and installation guide (Version 7.0) report September 1992
On the Temperature Dependence of Soil Respiration journal June 1994
Oxidative dissolution under the channel leads geomorphological evolution at the Shale Hills catchment journal December 2016
A coupled model for transport of multiple chemical species and kinetic precipitation/dissolution reactions with application to reactive flow in single phase hydrothermal systems journal May 1994
Drivers of Dissolved Organic Carbon Mobilization From Forested Headwater Catchments: A Multi Scaled Approach journal July 2021
Integration of nitrogen dynamics into the Noah-MP land surface model v1.1 for climate and environmental predictions journal January 2016
Linking soil- and stream-water chemistry based on a Riparian Flow-Concentration Integration Model journal January 2009
Landscape heterogeneity drives contrasting concentration–discharge relationships in shale headwater catchments journal January 2015
Multiresponse modeling of variably saturated flow and isotope tracer transport for a hillslope experiment at the Landscape Evolution Observatory journal October 2016
Temperature controls production but hydrology regulates export of dissolved organic carbon at the catchment scale journal January 2020
How far can we go in distributed hydrological modelling? journal January 2001