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A Comparison of Methods to Compute the Potential of Mean Force
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journal
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January 2007 |
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GROMACS: Fast, flexible, and free
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journal
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January 2005 |
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CHARMM general force field: A force field for drug-like molecules compatible with the CHARMM all-atom additive biological force fields
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journal
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January 2009 |
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Tackling Exascale Software Challenges in Molecular Dynamics Simulations with GROMACS
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book
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January 2015 |
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Free Energy Calculations
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book
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January 2007 |
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Interaction Models for Water in Relation to Protein Hydration
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book
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January 1981 |
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GROMACS: A message-passing parallel molecular dynamics implementation
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journal
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September 1995 |
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Ion pair potentials-of-mean-force in water
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journal
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August 1994 |
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Molecular dynamics — potential of mean force calculations as a tool for understanding ion permeation and selectivity in narrow channels
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December 2006 |
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The Electrolyte Genome project: A big data approach in battery materials discovery
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June 2015 |
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Formalizing atom-typing and the dissemination of force fields with foyer
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September 2019 |
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PLUMED: A portable plugin for free-energy calculations with molecular dynamics
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October 2009 |
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PLUMED 2: New feathers for an old bird
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February 2014 |
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The influence of water interfacial potentials on ion hydration in bulk water and near interfaces
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journal
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March 2013 |
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Quasi-chemical theory for anion hydration and specific ion effects: Cl - (aq) vs. F - (aq)
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journal
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October 2019 |
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GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers
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September 2015 |
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Electrochemically Stable, High Transference Number Lithium Bis(malonato)borate Polymer Solution Electrolytes
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journal
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April 2020 |
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Water-Mediated Ion Pairing: Occurrence and Relevance
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journal
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April 2016 |
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Marcus Theory of Ion-Pairing
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July 2017 |
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Quasi-Chemical Theory with Cluster Sampling from Ab Initio Molecular Dynamics: Fluoride (F – ) Anion Hydration
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journal
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November 2018 |
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Why Lithium Ions Stick to Some Anions and Not Others
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journal
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April 2021 |
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Models of Ion Solvation Thermodynamics in Ethylene Carbonate and Propylene Carbonate
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journal
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August 2015 |
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Driving Force for the Complexation of Charged Polypeptides
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journal
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January 2020 |
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Rethinking Metadynamics: From Bias Potentials to Probability Distributions
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journal
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March 2020 |
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Condensed Phase Water Molecular Multipole Moments from Deep Neural Network Models Trained on Ab Initio Simulation Data
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journal
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October 2021 |
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Ion Correlations and Their Impact on Transport in Polymer-Based Electrolytes
|
journal
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February 2021 |
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Optimization of the OPLS-AA Force Field for Long Hydrocarbons
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journal
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March 2012 |
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Efficient Algorithms for Langevin and DPD Dynamics
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journal
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March 2012 |
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GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation
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journal
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February 2008 |
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Electronic Effects on the Surface Potential at the Vapor−Liquid Interface of Water
|
journal
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November 2009 |
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Molecular Force Field for Ionic Liquids Composed of Triflate or Bistriflylimide Anions
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journal
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October 2004 |
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Atomistic Insight into Orthoborate-Based Ionic Liquids: Force Field Development and Evaluation
|
journal
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July 2014 |
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A Time-Independent Free Energy Estimator for Metadynamics
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journal
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July 2014 |
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Ion Pairing in Molecular Simulations of Aqueous Alkali Halide Solutions
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journal
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May 2009 |
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Potential of Mean Force between Two Molecular Ions in a Polar Molecular Solvent: A Study by the Three-Dimensional Reference Interaction Site Model
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journal
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August 1999 |
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Promoting transparency and reproducibility in enhanced molecular simulations
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journal
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July 2019 |
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Potential of mean force between oppositely charged nanoparticles: A comprehensive comparison between Poisson–Boltzmann theory and Monte Carlo simulations
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journal
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October 2017 |
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Simulation study of ion pairing in concentrated aqueous salt solutions with a polarizable force field
|
journal
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January 2013 |
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Generalized transition state theory in terms of the potential of mean force
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journal
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September 2003 |
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Dissociation of NaCl in water from ab initio molecular dynamics simulations
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journal
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March 2010 |
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Surface potential of the water liquid–vapor interface
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journal
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March 1988 |
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Commentary: The Materials Project: A materials genome approach to accelerating materials innovation
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journal
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July 2013 |
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Structure and polarization near the Li + ion in ethylene and propylene carbonates
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journal
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October 2017 |
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Escaping free-energy minima
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journal
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September 2002 |
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A molecular dynamics method for simulations in the canonical ensemble
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journal
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June 1984 |
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GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit
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journal
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February 2013 |
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LigParGen web server: an automatic OPLS-AA parameter generator for organic ligands
|
journal
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April 2017 |
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Well-Tempered Metadynamics: A Smoothly Converging and Tunable Free-Energy Method
|
journal
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January 2008 |
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Canonical dynamics: Equilibrium phase-space distributions
|
journal
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March 1985 |
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Calculation of effective interaction potentials from radial distribution functions: A reverse Monte Carlo approach
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journal
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October 1995 |
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Hydration Mimicry by Membrane Ion Channels
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journal
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April 2020 |
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Conductivity and Viscosity of Solutions of LiCF3 SO 3, Li ( CF 3 SO 2 ) 2 N , and Their Mixtures
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journal
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September 1991 |
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Fast estimation of ion pairing using a cluster model
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audiovisual
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January 2022 |